Database supported nanocrystal structure identification by lattice-fringe fingerprinting with structure factor extraction
View Patent ↗Candidate structures for nanocrystal and other specimens are obtained based on a specimen complex spectrum that is determined as a Fourier transform of a phase-contrast electron micrograph. The specimen can also be assessed based on an amplitude portion of the complex spectrum using a lattice-fringe fingerprint. In some examples, the specimen complex spectrum is compensated based on an electron microscope transfer function, a specimen tilt, or based on other crystallographic compensation. Amplitude or phase portions of the compensated complex spectrum can be compared with reference structures stored in one or more reference structure databases.
1. A computer-implemented method, comprising:
with a computer, processing a transmission electron micrograph image of a specimen to determine a complex spectrum of the image so as to obtain at least partial geometrical and structure factor fingerprint information associated with the specimen;
comparing partial specimen geometrical and structure factor fingerprint phase information with corresponding geometrical and structure factor fingerprint phase information associated with at least one candidate structure;
selecting at least one candidate structure from a set of one or more predetermined reference structures based on a comparison of specimen lattice-fringe fingerprint phase information with lattice-fringe fingerprint phase information associated with related structural information associated with the one or more predetermined reference structures; and
based on the comparison, communicating an assessment as to whether a specimen structure corresponds to the at least one selected candidate structure.
2. The method of claim 1 , wherein obtaining the at least partial structure factor fingerprint phase information comprises determining at least a portion of a complex spectrum associated with the specimen, and wherein the specimen structure factor fingerprint phase information is based on the portion of the complex spectrum.
3. The method of claim 2 , wherein the specimen structure factor fingerprint phase information is based on at least one phase of the complex spectrum.
4. The method of claim 3 , wherein the complex spectrum is a crystallographically compensated complex spectrum.
5. The method of claim 3 , further comprising selecting the at least one candidate structure from a set of one or more predetermined reference structures based on a comparison of specimen chemical fingerprint information with chemical fingerprint information associated with the one or more predetermined reference structures.
6. The method of claim 3 , further comprising obtaining lattice-fringe fingerprint information for at least one reference structure from at least one database.
7. The method of claim 6 , further comprising adding lattice-fringe fingerprint information for the specimen to the at least one database.
8. The method of claim 3 , wherein assessing whether a specimen structure corresponds to at least one of the candidate structures includes assigning a figure of merit to the at least one candidate structure.
9. The method of claim 1 , wherein the geometrical fingerprint information associated with the specimen is obtained based on an electron diffraction pattern.
10. The method of claim 9 , wherein the electron diffraction pattern is an electron precession based diffraction pattern.
11. One or more computer-readable storage media, the computer-readable storage media not being a propagating signal comprising computer-executable instructions for performing the method of claim 1 .
12. A method, comprising:
with a computer, obtaining at least partial geometrical and structure factor fingerprint information associated with a specimen based on lattice-fringe fingerprint information, wherein the lattice-fringe fingerprint information is based on a Fourier transform of a phase contrast image of the specimen;
comparing partial specimen geometrical and structure factor fingerprint amplitude information with corresponding geometrical and structure factor fingerprint amplitude information associated with at least one candidate structure; and
based on the comparison, communicating an assessment as to whether a specimen structure corresponds to the at least one candidate structure.
13. The method of claim 12 , further comprising obtaining at least a portion of the specimen geometrical structure factor fingerprint amplitude information by precession electron diffraction.
14. The method of claim 12 , further comprising obtaining a phase contrast image of the specimen, and obtaining the lattice-fringe fingerprint information from the phase contrast image.