Cyclopropenones and the photochemical generation of cyclic alkynes therefrom
View Patent ↗Cyclic alkynes (e.g., cyclooctynes such as dibenzocyclooctynes) can be photochemically generated from cyclopropenones as disclosed herein. The cyclic alkynes can be reacted (e.g., in situ) with materials having alkyne-reactive groups (e.g., azide groups in a “click” reaction). In preferred embodiments, the generation and reaction of the cyclic alkyne can proceed in the absence of a catalyst (e.g., Cu(I)). These reactions can be useful, for example, for the selective labeling of living cells that are metabolically modified with azido-containing surface monosaccharides, or for light-directed surface patterning.
1. A compound having the formula:
wherein each Ar is a phenyl group; E represents C(R 4 ) 2 ; and each R 4 is independently selected from the group consisting of hydrogen, halogen, hydroxy, alkoxy, nitrate, nitrite, sulfate, a C1-C10 organic group, and a linking group;
wherein at least one Ar is a phenyl group in which one or more carbon atoms of the phenyl group are substituted with a substituent selected from the group consisting of alkyl, aryl, heteroaryl, halogen, nitro, cyano, hydroxyl, alkoxyl, aryloxyl; thio, mercapto, alkylthio, arylthio, amino, alkylamino, arylamino, dialkylamino, diarylamino, arylalkylamino, aminocarbonyl, alkylaminocarbonyl, arylaminocarbonyl, dialkylaminocarbonyl, diarylaminocarbonyl, arylalkylaminocarbonyl, carboxyl, alkyloxycarbonyl, aryloxycarbonyl, aldehyde, arylcarbonyl, alkylcarbonyl, iminyl, aryliminyl, alkyliminyl, sulfo, alkylsulfonyl, arylsulfonyl, hydroximinyl, aryloximinyl, and alkoximinyl; and
wherein two or more alkyl or heteroalkyl substituents of a phenyl group may optionally be combined to form fused aryl-alkyl or aryl-heteroalkyl ring systems.
2. A compound having the formula:
wherein each Ar is a phenyl group; G represents CR 6 ; and each R 5 and R 6 is independently selected from the group consisting of hydrogen, halogen, hydroxy, alkoxy, nitrate, nitrite, sulfate, a C1-C10 organic group, and a linking group.
3. A compound having the formula I:
wherein:
R 1 is selected from the group consisting of: an alkoxy and a hydroxyl;
R 2 is selected from the group consisting of: an alkyl, a heteroalkyl, a cycloalkyl, a heterocycloalkyl, an aryl, an alkoxy, a carboxy, a hydroxyl, an ether, an ester, and a halogen; and
the cyclooctyne is a dibenzocyclooctyne.
4. The compound of claim 3 wherein R 1 is a butoxy group and R 2 is selected from the group consisting of the formulae:
5. The compound of claim 3 wherein R 1 is a butoxy group; and R 2 is a PEGylated or biotinylated group.
6. The compound of claim 5 wherein the biotinylated group has the formula:
7. The compound of claim 3 wherein the dibenzocyclopropenone has the formula II:
8. A method of photochemically inducing the reaction of two materials, the method comprising:
photochemically generating a cyclic alkyne from a compound according to claim 3 : and
contacting the cyclic alkyne with a material comprising an alkyne-reactive group under conditions effective for the cyclic alkyne and the material comprising the alkyne-reactive group to react.
9. The method of claim 8 wherein the method photochemically induces the ligation of the cyclic alkyne and the material comprising the alkyne-reactive group.
10. The method of claim 8 wherein the method forms a cyclic adduct.
11. The method of claim 10 wherein the material comprising the alkyne-reactive group is a 1,3-dipole-functional compound.
12. The method of claim 11 wherein the cyclic adduct is a heterocyclic compound.
13. The method of claim 12 wherein the 1,3-dipole-functional compound is selected from the group consisting of azide-functional compounds, nitrile oxide-functional compounds, nitrone-functional compounds, azoxy-functional compounds, acyl diazo-functional compounds, and combinations thereof.
14. The method of claim 13 wherein the 1,3-dipole-functional compound is an azide-functional compound, and the cyclic adduct is a triazole.
15. The method of claim 10 wherein the material comprising the alkyne-reactive group is a diene, and the cyclic adduct is a Diels-Alder adduct.
16. The method of claim 10 wherein the material comprising the alkyne-reactive group is a nitrosoarene, and the cyclic adduct is an N-hydroxy indole.
17. The method of claim 10 wherein the material comprising the alkyne-reactive group is a metal-containing compound.
18. The method of claim 17 wherein the metal-containing compound is a four- or five-membered platinacycle.
19. The method of claim 10 wherein the material comprising the alkyne-reactive group is carbon monoxide, the method further comprising contacting the cyclic alkyne with an alkene, and the cyclic adduct is a [2+2+1] cycloaddition product.
20. The method of claim 8 wherein the material comprising the alkyne-reactive group is a metal carbene complex, the method further comprising contacting the cyclic alkyne with an alkene under conditions effective to form a butadiene.
21. The method of claim 20 wherein the method comprises enyne metathesis.
22. The method of claim 8 wherein the material comprising the alkyne-reactive group is an alkyne, the method further comprising contacting the cyclic alkyne with a metal catalyst under conditions effective to form a different alkyne.
23. The method of claim 22 wherein the method comprises alkyne metathesis.
24. A method of photochemically inducing the ligation of two molecules, comprising:
(a) photochemically generating a cyclic alkyne from a compound according to claim 3 ; and
(b) contacting the cyclic alkyne with an azide under conditions effective to form a triazole.
25. The method of claim 24 wherein the azide or the cyclic alkyne is bound to the surface of a substrate.
26. The method of claim 24 wherein the azide or the cyclic alkyne is integrated into a substrate layer.
27. The method of claim 25 wherein the substrate is a solid substrate or a cell membrane.
28. The method of claim 26 wherein the substrate is a cell membrane.
29. The method of claim 25 wherein, if the azide is bound to the surface of a substrate or integrated into a substrate layer, then the cyclic alkyne is a ligand that binds to the azide, and wherein if the cyclic alkyne is bound to the surface of a substrate or integrated into a substrate layer, then the azide is a ligand that binds to the cyclic alkyne.
30. The method of claim 29 wherein the azide ligand or the cyclic alkyne ligand is a detectable label.
31. The method of claim 24 wherein R 1 is a butoxy group and R 2 is selected from the group consisting of the formulae:
32. The method of claim 24 wherein R 1 is a butoxy group; and R 2 is a PEGylated or biotinylated group.
33. The method of claim 32 wherein the biotinylated group has the formula:
34. The method of claim 24 wherein the dibenzocyclopropenone has the formula II:
35. The method of claim 24 wherein the azide is selected from the group consisting of: an alkyl azide, a heteroalkyl azide, a cycloalkyl azide, a heterocycloalkyl azide, an alkylamino azide, a benzyl azide, an aryl azide, an alkyacyl azide, and an arylacyl azide.
36. The method of claim 24 wherein step (a) comprises irradiating the cyclopropenone with light having a wavelength selectively absorbed by the cyclopropenone, and substantially not absorbed by a cyclic alkyne or by a triazole.
37. The method of claim 36 wherein the wavelength of light is from about 220 nm to about 450 nm.
38. The method of claim 24 wherein the method further comprises the step of providing a cyclopropenone, said step comprising:
(i) providing a 3,3′-dialkyloxybibenzyl; and
(ii) reacting the 3,3′-dialkyloxybibenzyl with tetrachloropenone in the presence of anhydrous aluminum chloride under medium dilution conditions effective to generate a cyclopropenone.
39. The method of claim 38 wherein the 3,3′-dialkyloxybibenzyl is 3,3′-dibutoxybibenzyl, and the cyclopropenone has the formula I:
wherein R 1 is a butoxy group and R 2 is a butoxy group or a hydroxyl.
40. The method of claim 38 wherein the yield of the reaction in step (ii) comprises a compound having the formula II and a compound having the formula III:
41. The method of claim 24 wherein the azide has the formula:
R 3 —N 3
wherein R 3 is selected from the group consisting of: an alkyl, a heteroalkyl, a cycloalkyl, a heterocycloalkyl, an alkylamino, an aryl, an alkylacyl, and an arylacyl.
42. The method of claim 24 wherein the triazole has the formula:
wherein:
R 1 is selected from the group consisting of: an alkoxy and a hydroxyl;
R 2 is selected from the group consisting of: an alkyl, a heteroalkyl, a cycloalkyl, a heterocycloalkyl, an aryl, an alkoxy, a carboxy, a hydroxyl, an ether, an ester, and a halogen; and
R 3 is selected from the group consisting of a primary alkyl, a secondary alkyl, a tertiary alley, an aryl, an alkylaryl, an acyl, an alkylacyl, and an arylacyl.
43. A method of photochemically inducing the reaction of two materials, the method comprising:
photochemically generating a cyclic alkyne from a compound according to claim 1 ; and
contacting the cyclic alkyne with a material comprising an alkyne-reactive group under conditions effective for the cyclic alkyne and the material comprising the alkyne-reactive group to react.
44. A method of photochemically inducing the reaction of two materials, the method comprising:
photochemically generating a cyclic alkyne from a compound according to claim 2 ; and
contacting the cyclic alkyne with a material comprising an alkyne-reactive group under conditions effective for the cyclic alkyne and the material comprising the alkyne-reactive group to react.