Methods for diagnosing pancreatic cancer using MicroRNAs
The present invention provides novel methods and compositions for the diagnosis and treatment of solid cancers. The invention also provides methods of identifying inhibitors of tumorigenesis.
1. A method of diagnosing whether a subject has pancreatic cancer, comprising:
a.) obtaining a test sample from subject having, or suspected of having pancreatic cancer, wherein the sample is extracted from pancreas tissue;
b.) measuring, by hybridization assay, the level of at least one miR gene product of miR-221;
c.) comparing the level of at least one miR gene product of miR-221 in the test sample from a subject to a control level of at least one corresponding miR gene product;
d.) diagnosing the subject as having, or at risk for developing, pancreatic cancer, if the level of the at least one miR gene product of miR-221 in the test sample from the subject is greater than the control level of the corresponding miR gene product;
wherein an increase in the level of miR-221 gene product in the test sample, relative to the control level of miR-221 gene product, is indicative of the subject having pancreatic cancer.
2. A method of diagnosing whether a subject has pancreatic cancer, comprising:
a.) reverse transcribing at least one miR gene product of miR-221 from a test sample from the subject to provide at least one corresponding miR gene product target oligonucleotides; wherein the test sample is extracted from pancreas tissue;
b.) hybridizing at least one miR target oligodeoxynucleotides to a microarray comprising miRNA-specific probe oligonucleotides that include at least one corresponding miRNA-specific probe oligonucleotides to provide a hybridization profile for the test sample;
c.) comparing the test sample hybridization profile to at least one control hybridization profile; and
d.) diagnosing the subject as having, or at risk for developing, pancreatic cancer if the level of at least one miR gene product of miR-221 in the test sample is greater than the control;
wherein an increase in the level of miR-221 gene product in the test sample, relative to the control level of miR-221 gene product, is indicative of the subject having pancreatic cancer.
3. A method of claim 1 for diagnosing whether a subject has pancreatic cancer, comprising:
a.) obtaining a test sample from subject having, or suspected of having, pancreatic cancer, wherein the sample is extracted from pancreas tissue;
b.) measuring, by hybridization assay, the level of at least one miR gene product of each of miR-221, miR-222, miR-214, and miR-100;
c.) comparing the level of miR gene product of each of miR-221, miR-222, miR-214, and miR-100, in the test sample to a control level of each corresponding miR gene product; and
diagnosing the subject as having, or at risk for developing, pancreatic cancer, if the level of miR gene products of miR-221, miR-222, miR-214, and miR-100 in the test sample are high compared with the control levels of the corresponding miR gene products;
wherein an increase in the levels of the miR-221, miR-222 and miR-100 gene products in the test sample, relative to the control levels of miR-221, miR-222 and miR-100, are indicative of the subject having pancreatic cancer.
4. The method of claim 1 further comprising:
measuring, by hybridization assay, the level of at least one miR gene product of miR-222;
comparing the level of at least one miR gene product of miR-222 in the test sample from a subject to a control level of at least one corresponding miR gene product; and
diagnosing the subject as having, or at risk for developing, pancreatic cancer, if the level of the at least one miR gene product of miR-222 in the test sample from the subject is greater than the control level of the corresponding miR gene product;
wherein an increase in the level of the miR-222 gene product in the test sample, relative to the control levels of miR-222, is indicative of the subject having pancreatic cancer.
5. The method of claim 2 , further comprising:
reverse transcribing at least one miR gene product of miR-222; and
diagnosing the subject as having, or at risk for developing, pancreatic cancer if the level of at least one miR gene product of miR-222 in the test sample is greater than the control;
wherein an increase in the level of the miR-222 gene product in the test sample, relative to the control levels of miR-222, is indicative of the subject having pancreatic cancer.
6. The method of claim 1 , further comprising:
confirming diagnosis by measuring at least one miR gene product of miR-222;
wherein an increase in the level of the miR-222 gene product in the test sample, relative to the control levels of miR-222, is indicative of the subject having pancreatic cancer.
7. The method of claim 1 , further comprising:
communicating the diagnosis to at least one person.