IP Library Granted Patent US 8,513,242
Granted Patent B2
US 8,513,242 · App. 13/139,009 · Granted Aug 20, 2013

Pyrimidine compounds and methods of making and using same

Inventors: Phoebe Chiang (East Lyme, CT); Shomir Ghosh (Brookline, MA)
Assignee: Cystic Fibrosis Foundation Therapeutics, Inc.
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Quick Facts
Patent No.
US 8,513,242
App. No.
13/139,009
Granted
Aug 20, 2013
Kind
B2
Abstract

Disclosed herein are pyrimidinyl compounds that are contemplated to be modulators of cystic fibrosis transmembrane regulators (CFTR), and methods of making and using same. Also provided are pharmaceutical compositions and methods of treating disorders associated with cystic fibrosis transmembrane regulators, such as airway inflammation, cystic fibrosis, and the like.

Claims (32)

1. A compound of formula I:

including a pharmaceutically acceptable salt, prodrug or N-oxide thereof, wherein:

X 2 is CR 2 or N, X 3 is CR 3 or N, X 4 is CR 4 or N, X 5 is CR 5 or N, and X 6 is CR 6 or N, where no more than two of X 2 -X 6 are N;

W is C 4 -C 10 cycloalkyl substituted with one or two substituents independently selected from the group consisting of C 1 -C 6 alkyl, C 3 -C 10 cycloalkyl, —OC 1 -C 6 alkyl, —O—C 3 -C 10 cycloalkyl, —CF 3 , and fluoro;

R 1 and R 11 are independently hydrogen, C 1 -C 6 alkyl, C 3 -C 10 cycloalkyl, C 3 -C 10 heterocycloalkyl, —OC 1 -C 6 alkyl-O—C 1 -C 10 cycloalkyl, —O—C 1 -C 10 heterocycloalkyl, —O—C(R 12 )(R 13 )—C 1 -C 10 heterocycloalkyl, —O-aryl, —O-heteroaryl, —O—C(R 12 )(R 13 )-aryl, or —O—C(R 12 )(R 13 )-heteroaryl;

R 2 and R 6 are independently hydrogen, F, Br, I, —CF 3 , —OCF 3 , —OCHF 2 , —OCH 2 F, C 2 -C 6 alkyl, C 3 -C 10 cycloalkyl, C 3 -C 10 heterocyclyl, —OC 1 -C 6 alkyl, —-O—C 3 -C 10 cycloalkyl, —CN, aryl, or heteroaryl;

R 3 and R 5 are independently hydrogen, halogen, —CF 3 , —OCF 3 , —OCHF 2 , —OCH 2 F, C 1 -C 6 alkyl, C 3 -C 10 cycloalkyl, C 3 -C 10 heterocyclyl, —OC 1 -C 6 alkyl, —O—C 3 -C 10 cycloalkyl, —CN, aryl, or heteroaryl;

R 4 is hydrogen, F, Cl, Br, I, —CF 3 , —CN, —OCHF 2 , —OCH 2 F, —OCF 3 , C 1 -C 10 alkyl, C 3 -C 10 cycloalkyl, C 3 -C 10 heterocyclyl, —OC 1 -C 10 alkyl, —OC 3 -C 10 cycloalkyl, —OC 3 -C 10 heterocycloalkyl, —SC 1 -C 10 alkyl, —SC 3 -C 10 cycloalkyl, aryl, or heteroaryl;

R 12 and R 13 each represent independently for each occurrence H, methyl, ethyl, n-propyl, isopropyl, or cyclopropyl;

n is 1, 2, or 3;

where at least one of R 2 , R 3 , R 4 , R 5 , and R 6 is not hydrogen;

where R 3 is not morpholino or pyridyl; and

where if R 4 is —CH 3 , —OCF 3 , —OCH 3 , F, or Cl, then W is not unsubstituted cyclohexyl or unsubstituted cyclopropyl, or R 1 is not hydrogen.

2. The compound of claim 1 , wherein X 2 is CR 2 , X 3 is CR 3 or N, X 4 is CR 4 , X 5 is CR 5 , and X 6 is CR 6 .

3. The compound of claim 1 , wherein W is C 4 -C 10 cycloalkyl substituted with one or two substituents independently selected from the group consisting of C 1 -C 6 alkyl and fluoro.

4. The compound of claim 1 , wherein W is cyclohexyl substituted with C 1 -C 6 alkyl.

5. The compound of claim 1 , wherein R 1 and R 11 are independently hydrogen, C 1 -C 6 alkyl, C 3 -C 10 cycloalkyl, C 3 -C 10 heterocycloalkyl, —OC 1 -C 6 alkyl, —O—C 3 -C 10 cycloalkyl, —O—C 3 -C 10 heterocycloalkyl, or —O—C(R 12 )(R 13 )—C 3 -C 10 heterocycloalkyl.

6. The compound of claim 1 , wherein R 1 is methoxy, ethoxy, propoxy, t-butoxy, cyclobutoxy, morpholinyl, —O-tetrahydrofuranyl, —O—CH 2 -tetrahydrofuranyl, —O-tetrahydropyranyl, —O—CH 2 -tetrahydropyranyl, —O-oxetanyl, —O—CH 2 -oxetanyl, phenoxy or benzyloxy; and R 11 is hydrogen or methyl.

7. The compound of claim 1 , wherein R 2 and R 6 are hydrogen.

8. The compound of claim 1 , wherein R 3 and R 5 are hydrogen or halogen.

9. The compound of claim 1 , wherein R 4 is —CF 3 , —OCHF 2 , —OCH 2 F, —OCF 3 , C 1 -C 6 alkyl, C 3 -C 10 cycloalkyl, C 3 -C 10 heterocyclyl, —OC 1 -C 6 alkyl, —OC 3 -C 10 cycloalkyl, or —OC 3 -C 10 heterocycloalkyl.

10. The compound of claim 1 , wherein the compound is represented by formula Ia:

including a pharmaceutically acceptable salt thereof, wherein:

X 2 is CR 2 , X 3 is CR 3 , X 4 is CR 4 , X 5 is CR 5 , and X 6 is CR 6 ;

W is C 4 -C 10 cycloalkyl substituted with one or two substituents independently selected from the group consisting of C 1 -C 6 alkyl, C 3 -C 10 cycloalkyl, —OC 1 -C 6 alkyl, —O—C 3 -C 10 cycloalkyl, —CF 3 , and fluoro;

R 1 and R 11 are independently hydrogen, C 1 -C 6 alkyl, C 3 -C 10 cycloalkyl, —OC 1 -C 6 alkyl, or —O—C 3 -C 10 cycloalkyl;

R 2 and R 6 are independently hydrogen, F, Br, I, —CF 3 , —OCF 3 , —OCHF 2 , —OCH 2 F, —OC 1 -C 6 alkyl, or —O—C 3 -C 10 cycloalkyl;

R 3 and R 5 are independently hydrogen, halogen, —CF 3 , —OCF 3 , —OCHF 2 , —OCH 2 F, —OC 1 -C 6 alkyl, or —O—C 3 -C 10 cycloalkyl; and

R 4 is F, Cl, Br, I, —CF 3 , —CN, —OCHF 2 , —OCH 2 F, —OCF 3 , C 3 -C 10 heterocyclyl, —OC 1 -C 6 alkyl, —OC 3 -C 10 cycloalkyl, or heteroaryl.

11. The compound according to claim 10 , wherein at least one of R 1 and R 11 is selected from the group consisting of hydrogen, C 1 -C 6 alkyl, —O—C 1 -C 6 alkyl, and —O—C 3 -C 10 cycloalkyl.

12. The compound of claim 10 , wherein at least one of R 1 and R 11 is selected from the group consisting of hydrogen, —CH 3 , —OCH 3 , —O-isopropyl, —O-t-butyl, and —O-cyclobutyl.

13. A pharmaceutical composition comprising a compound of claim 1 and a pharmaceutically acceptable carrier.

Assignments (2)
CORRECTIVE ASSIGNMENT TO CORRECT THE CORRECT EXECUTION DATE PREVIOUSLY RECORDED AT REEL: 049311 FRAME: 0713. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Dec 11, 2019
From: CYSTIC FIBROSIS FOUNDATION THERAPEUTICS, INC.
To: CYSTIC FIBROSIS FOUNDATION
Reel/Frame 051256/0161 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 29, 2019
From: CYSTIC FIBROSIS FOUNDATION THERAPEUTICS, INC.
To: CYSTIC FIBROSIS FOUNDATION
Reel/Frame 049311/0713 →
Continuity (3)
Provisional Application 61184356 · Jun 5, 2009
Provisional Application 61122187 · Dec 12, 2008
Related Publication 20110281873A1 · Nov 17, 2011