IP Library Granted Patent US 8,592,177
Granted Patent B2
US 8,592,177 · App. 13/355,531 · Granted Nov 26, 2013

Process for the fermentative preparation of organic chemical compounds using Coryneform bacteria in which the sugR gene is present in attenuated form

Inventors: Brigitte Bathe (Salzkotten, DE); Georg Thierbach (Bielefeld, DE); Volker Wendisch (Jülich, DE); Verena Engels (Elsdorf, DE); Bernhard Eikmanns (Ulm, DE); Bastian Blombach (Stettenhofen, DE)
Assignees: Evonik Degussa GmbH; Forschungszentrum Jülich GmbH
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Quick Facts
Patent No.
US 8,592,177
App. No.
13/355,531
Granted
Nov 26, 2013
Kind
B2
Abstract

The invention relates to a recombinant coryneform bacterium which secretes an organic chemical compound and in which the sugR gene which codes for a polypeptide having the activity of an SugR regulator has been attenuated. The invention further relates to a processes for using this bacterium for the fermentative preparation of organic chemical compounds.

Claims (63)

1. A process for the fermentative production of an organic chemical compound, comprising:

a) producing a fermentation broth by fermenting a recombinant coryneform bacterium in a medium comprising a carbon source selected from the group consisting of: glucose, fructose, sucrose, and acetic acid, wherein said recombinant coryneform bacterium:

i) secretes said organic chemical compound;

ii) has the ability to utilize as a carbon source one or more of the sugars selected from the group consisting of: glucose, fructose; sucrose, and acetic acid;

iii) comprises a feedback resistant aspartate kinase; and

iv) comprises a SugR regulator that comprises the sequence of SEQ ID NO:2 except for one or more differences selected from the group consisting of:

aa) the amino acid at position 37 is selected from the group consisting of: L-alanine, glycine, L-isoleucine and L-proline;

bb) the amino acid at position 38 is selected from the group consisting of: L-alanine, glycine, L-isoleucine and L-proline;

cc) the amino acid at position 39 is selected from the group consisting of: L-alanine, glycine, L-isoleucine and L-proline;

dd) the amino acid at position 40 is L-proline;

ee) the amino acid at position 72 is selected from the group consisting of: L-alanine, glycine, L-glutamic acid and L-aspartic acid;

ff) the amino acid at position 101 is selected from the group consisting of: L-arginine, L-lysine, L-phenylalanine, L-methionine, L-glutamine, L-tryptophan, L-tyrosine and L-glutamic acid;

gg) the amino acid at position 105 is selected from the group consisting of: L-proline, L-phenylalanine, L-isoleucine, L-methionine, L-glutamine, L-tryptophan and L-tyrosine;

hh) the amino acid at position 210 is selected from the group consisting of: L-alanine, L-arginine, and L-proline; and

ii) the amino acid at position 216 is selected from the group consisting of: L-alanine, L-glutamic acid, L-isoleucine and L-tryptophan;

and

b) collecting said fermentation broth containing said organic chemical compound.

2. The process of claim 1 , wherein the fermentation broth collected in step b) is dried.

3. The process of claim 1 , wherein the fermentation broth collected in step b) is dried without the removal of biomass.

4. The process of claim 1 , wherein biomass is removed from the fermentation broth of step b) so that not more than 30% of the biomass remains in the product thereby produced.

5. The process of claim 1 , wherein said organic chemical compound is isolated from the fermentation broth of step b) so that not more than 0.1% of biomass remains in the product thereby produced.

6. The process of claim 1 , wherein said organic chemical compound is a hydroxy acid or a keto acid.

7. The process of claim 1 , wherein said organic chemical compound is an L-amino acid.

8. The process of claim 1 , wherein said organic chemical compound is L-lysine, L-valine or L-isoleucine.

9. The process of claim 1 , wherein said recombinant coryneform bacterium is of the species Corynebacterium glutamicum.

10. The process of claim 1 , wherein said recombinant coryneform bacterium additionally possesses one or more of the features selected from the group consisting of:

a) expression of a polynucleotide which codes for an aspartate-semialdehyde dehydrogenase (Asd) is increased compared to expression in a corresponding non-recombinant bacterium,

b) expression of a polynucleotide which codes for a dihydrodipicolinate synthase (DapA) is increased compared to expression in a corresponding non-recombinant bacterium,

c) expression of a polynucleotide which codes for a dihydrodipicolinate reductase (DapB) is increased compared to expression in a corresponding non-recombinant bacterium,

d) expression of a polynucleotide which codes for a tetrahydrodipicolinate succinylase (DapD) is increased compared to expression in a corresponding non-recombinant bacterium,

e) expression of a polynucleotide which codes for a succinyl-aminoketopimelate transaminase (DapC) is increased compared to expression in a corresponding non-recombinant bacterium,

f) expression of a polynucleotide which codes for a succinyl-diaminopimelate desuccinylase (DapE) is increased compared to expression in a corresponding non-recombinant bacterium,

g) expression of a polynucleotide which codes for a diaminopimelate dehydrogenase (Ddh) is increased compared to expression in a corresponding non-recombinant bacterium,

h) expression of a polynucleotide which codes for a diaminopimelate epimerase (DapF) is increased compared to expression in a corresponding non-recombinant bacterium,

i) expression of a polynucleotide which codes for a diaminopimelate decarboxylase (LysA) is increased compared to expression in a corresponding non-recombinant bacterium,

j) expression of a polynucleotide which codes for a polypeptide having L-lysine export activity (LysE) is increased compared to expression in a corresponding non-recombinant bacterium,

k) expression of a polynucleotide which codes for an aspartate aminotransferase (Aat) is increased compared to expression in a corresponding non-recombinant bacterium,

l) expression of a polynucleotide which codes for a pyruvate carboxylase (Pyc) is increased compared to expression in a corresponding non-recombinant bacterium,

m) elimination of malate-quinone oxidoreductase (Mqo) activity,

n) elimination of malate dehydrogenase (Mdh) activity, and

o) elimination of citrate synthase (GltA) activity;

wherein the expression of polynucleotides encoding the enzymes in paragraphs a)-1) is increased by placing said polynucleotides under the control of a heterologous promoter or by increasing their copy number, and wherein the elimination of the activity of the enzymes of paragraphs m)-o) is due to the disruption of endogenous genes encoding the enzymes by making a deletion or insertion mutation in said endogenous genes.

11. A process for the fermentative production of an organic chemical compound, comprising:

a) producing a fermentation broth by fermenting a recombinant coryneform bacterium in a medium comprising a carbon source selected from the group consisting of: glucose, fructose, sucrose, and acetic acid, wherein said recombinant coryneform bacterium:

i) secretes said organic chemical compound;

ii) has the ability to utilize as a carbon source one or more of the sugars selected from the group consisting of: glucose, fructose; sucrose, and acetic acid;

iii) comprises a feedback resistant aspartate kinase; and

iv) comprises a gene encoding the SugR regulator of SEQ ID NO:2, said gene comprising in its promoter region, the nucleotide sequence of SEQ ID NO:13 except for one or more mutations selected from the group consisting of:

aa) replacement of the nucleobase thymine at position 7 of SEQ ID NO:13 by guanine;

bb) deletion of one or more of the nucleobases from position 2 to 7 of SEQ ID NO:13;

cc) deletion of one or more of the nucleobases between position 52 and 57 of SEQ ID NO:13; and

dd) replacement of one or more of the nucleobases adenine or guanine between position 52 and 57 of SEQ ID NO:13 by thymine or cytosine;

and

b) collecting said fermentation broth containing said organic chemical compound.

12. The process of claim 11 , wherein the fermentation broth collected in step b) is dried.

13. The process of claim 11 , wherein the fermentation broth collected in step b) is dried without the removal of biomass.

14. The process of claim 11 , wherein biomass is removed from the fermentation broth of step b) so that not more than 30% of the biomass remains in the product thereby produced.

15. The process of claim 11 , wherein said organic chemical compound is isolated from the fermentation broth of step b) so that not more than 0.1% of biomass remains in the product thereby produced.

16. The process of claim 11 , wherein said gene encoding the SugR regulator of SEQ ID NO:2 comprises a start codon selected from the group consisting of GTG and TTG.

17. The process of claim 11 , wherein said organic chemical compound is a hydroxy acid or a keto acid.

18. The process of claim 11 , wherein said organic chemical compound is an L-amino acid.

19. The process of claim 11 , wherein said organic chemical compound is L-lysine, L-valine or L-isoleucine.

20. The process of claim 11 , wherein said recombinant coryneform bacterium is of the species Corynebacterium glutamicum.

Assignments (2)
CHANGE OF NAME Recorded Jan 26, 2020
From: EVONIK DEGUSSA GMBH
To: EVONIK OPERATIONS GMBH
Reel/Frame 051698/0756 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 6, 2013
From: BATHE, BRIGITTE; BLOMBACH, BASTIAN; EIKMANNS, BERNHARD; ENGELS, VERENA; THIERBACH, GEORG; WENDISCH, VOLKER
To: EVONIK DEGUSSA GMBH; FORSCHUNGSZENTRUM JULICH GMBH
Reel/Frame 031353/0081 →
Continuity (4)
Division 12232610 · Sep 19, 2008
Provisional Application 60960375 · Sep 27, 2007
Provisional Application 60996706 · Nov 30, 2007
Related Publication 20120214211A1 · Aug 23, 2012