Method of bioimage data processing for revealing more meaningful anatomic features of diseased tissues
The present invention discloses a method for generating elevation maps or images of a tissue layer/boundary with respect to a fitted reference surface, comprising the steps of finding and segmenting a desired tissue layer/boundary; fitting a smooth reference surface to the segmented tissue layer/boundary; calculating elevations of the same or other tissue layer/boundary relative to the fitted reference surface; and generating maps of elevation relative to the fitted surface. The elevation can be displayed in various ways including three-dimensional surface renderings, topographical contour maps, contour maps, en-face color maps, and en-face grayscale maps. The elevation can also be combined and simultaneously displayed with another tissue layer/boundary dependent set of image data to provide additional information for diagnostics.
1. A method for analyzing optical coherence tomography data of an eye, said eye having at least one boundary surface associated therewith, said method comprising:
acquiring a set of image data of the eye using an optical coherence tomography (OCT) device, said device including a light source, a beam splitter for dividing the light along a sample arm and a reference arm, said sample arm further including optical elements to scan the beam over the eye, said OCT device including a detector for receiving light returned from both the sample and the reference arms and generating signals corresponding to 3D image data based on an axial reflection distribution arising from reflecting features in the eye;
segmenting the 3D image dataset to identify the retinal pigment epithelium (RPE);
generating a substantially smooth reference surface from the RPE;
segmenting the 3D image dataset to identify an additional retinal surface;
calculating the distance between points on the substantially smooth reference surface to points on the at least one additional segmented retinal surface;
generating an image map of the calculated distances; and
displaying the map or an analysis derived therefrom.
2. A method as recited in claim 1 , wherein the substantially smooth reference surface minimizes the perturbations of the surface associated with disease so as to approximate the tissue surface that would exist if the tissue were normal.
3. A method as recited in claim 1 , wherein the substantially smooth reference surface is generated using one or more portions of the RPE.
4. A method as recited in claim 1 , wherein the substantially smooth reference surface is generated using the entire RPE.
5. A method as recited in claim 1 , wherein the segmenting step identifies the inner limiting membrane (ILM).
6. A method as recited in claim 1 , wherein the substantially smooth reference surface is generated by fitting the RPE.
7. A method as recited in claim 1 , wherein the substantially smooth reference surface is generated by smoothing the RPE.
8. A method as recited in claim 1 , wherein the substantially smooth reference surface is generated by filtering the RPE.
9. A method for analyzing optical coherence tomography data of an eye, said eye having at least one boundary surface associated therewith, said method comprising:
acquiring a set of image data of the eye using an optical coherence tomography (OCT) device, said device including a light source, a beam splitter for dividing the light along a sample arm and a reference arm, said sample arm further including optical elements to scan the beam over the eye, said OCT device including a detector for receiving light returned from both the sample and the reference arms and generating signals corresponding to 3D image data based on an axial reflection distribution arising from reflecting features in the eye;
identifying a boundary surface within the 3D image data set;
excluding at least one portion of the boundary surface;
generating a reference surface over the remaining regions of the boundary surface;
calculating the distance between points on the smooth reference surface to points of interest within the eye identified from the 3D image data set; and
displaying or storing an image map of the calculated distances.
10. A method as recited in claim 9 , wherein the points of interest correspond to points on said boundary surface.
11. A method as recited in claim 9 , wherein the points of interest correspond to points on a different boundary surface.
12. A method as recited in claim 9 , wherein the boundary surface is the cornea.
13. A method as recited in claim 9 , wherein the boundary surface is identified using a segmentation function.
14. A method as recited in claim 9 , wherein the substantially smooth reference surface is generated by fitting the boundary surface.
15. A method as recited in claim 9 , wherein the substantially smooth reference surface is generated by smoothing the boundary surface.
16. A method as recited in claim 9 , wherein the substantially smooth reference surface is generated by filtering the boundary surface.
17. A method as recited in claim 9 , the at least one portion excluded from the boundary surface is a pathological region.
18. A method as recited in claim 9 , wherein the substantially smooth reference surface approximates the tissue surface that would exist if the tissue were normal.