Fluorescent molecular probes for use in assays that measure test compound competitive binding with SAM-utilizing proteins
Assay methods may generally comprise forming homogeneous assay mixtures comprising target SAM-utilizing protein, fluorescent detection analyte, and test compound, incubating, and measuring FP or TR-FRET signal emitted in order to determine a measure of test compound-SAM -utilizing protein binding. Assay mixtures comprise a SAM-utilizing protein, and a fluorescent detection analyte that binds with the SAM-utilizing protein in the absence of test compound. Assay mixtures may further comprise a test compound. Assay mixture embodiments may generate FP or TR-FRET signal properties that are a function of the inherent binding interactions of both the test compound and the detection analyte with the SAM-utilizing protein. Fluorescent detection analytes comprise a fluorophore moiety, a covalent linker moiety, and a SAM-utilizing protein ligand moiety and could be utilized in FP or TR-FRET assays to measure test compound binding.
1. A fluorescent detection analyte having the structure of Formula (II):
wherein any two of R 2 , R 2′ , and R 3′ R 3′ are hydrogen and the third is a linker component having a linker moiety bonded to a fluorophore moiety.
2. A fluorescent detection analyte having the structure of Formula (III):
wherein any two of R 2 , R 2′ , and R 3′ are hydrogen and the third is a linker component having a linker moiety bonded to a fluorophore moiety.
3. A fluorescent detection analyte having the structure of Formula (IV):
wherein any two of R 2 , R 2′ , and R 3′ R 3′ are hydrogen and the third is a linker component-having a linker moiety bonded to a fluorophore moiety and wherein R is hydrogen, C 1-8 alkyl, C 2-6 alkynyl, C 3-6 cycloalkyl, C 6-10 aryl, five-to-ten membered heteosryl, five- to ten-membered heterocycyl, C 1-8 acyl, or [(S)-2-aminobutanoic acid]-4-yl.
4. A fluorescent detection analyte selected from the group consisting of Sinefungin Probe 1A, Sinefungin Probe 1B, Sinefungin Probe 2A, Sinefungin Probe 2B, Sinefungin Probe 3, Sinefungin Probe 4, Sinefungin Probe 5, Sinefungin Probe 6, Sinefungin Probe 7, Sinefungin Probe 8, Sinefungin Probe 9, Sinefungin Probe 10, Sinefungin Probe 11, Sinefungin Probe 12, Sinefungin Probe 13; wherein any A − is PF 6 or trifluoroacetate, or a mixture thereof, each respectively illustrated blow:
5. A fluorescent detection analyte selected from the group consisting of Thioadenosine Probe 1 and Thioadenosine Probe 2 eachrespectively illustrated blow:
6. A fluorescent detection analyte selected from the group consisting of Aza-adenosine Probe 1, Aza-adenosine Probe 3, Aza-adenosine Probe 5, Aza-adenosine Probe 6, Aza-adenosine Probe 7, Aza-adenosine Probe 8, Aza -adenosine 9, Aza-adenosine Probe 10, Aza-adenosine Probe 11, each respectively illustrated below:
7. A fluorescent detection analyte selected from the group consisting of Aza-adenosine Probe 2, Aza-adenosine Probe 4, Aza-adenosine Probe 12, Aza-adenosine Probe 13, Aza-adenosine Probe 14, Aza-adenosine Probe 15, Aza -adenosine Probe 16, Aza-adenosine Probe 17, Aza-adenosine Probe 18, Aza-adenosine Probe 19, Aza -adenosine Probe 20, and Aza-adenosine Probe 21, each respectively illustrated blow: