Method for determining differentiation level of pluripotent stem cells
The present invention provides a method for determining differentiation level of pluripotent stem cell, comprising a step of determining a flatness of cultured pluripotent stem cell, wherein the flatness is an indication.
1. A method comprising the steps of:
i) measuring flatness of at least one cultured pluripotent stem cell to determine whether the cultured pluripotent stem cell or a cultured pluripotent stem cell population is differentiated by applying a Student's t-test to compare the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population with those of undifferentiated pluripotent stem cells and differentiated cells, and
ii) identifying and removing at least one cultured pluripotent stem cell that is determined to be differentiated,
wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is measured from at least one tomographic image of a three-dimensional image of the cultured pluripotent stem cell or the cultured pluripotent stem cell population,
wherein the measured flatness is flatness of a surface of the cultured pluripotent stem cell roughly parallel to a bottom surface of the cultured pluripotent stem cell attached to a culture vessel or flatness of a surface of the cultured pluripotent stem cell population roughly parallel to a bottom surface of the cultured pluripotent stem cell population attached to a culture vessel, and
wherein the measured flatness of a differentiated cell or a differentiated cell population is statistically different from the measured flatness of an undifferentiated pluripotent stem cell or an undifferentiated pluripotent stem cell population.
2. The method according to claim 1 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is measured from a single cultured pluripotent stem cell.
3. The method according to claim 1 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined by calculating a standard deviation of height of the surface of one cultured pluripotent stem cell or the surface of the cultured pluripotent stem cell population,
wherein the height of the surface of one cultured pluripotent stem cell is a distance from a bottom surface of the cultured pluripotent stem cell attached to a culture vessel to the surface of the cultured pluripotent stem cell not attached to the culture vessel and roughly parallel to the bottom surface, and
wherein the height of the surface of the cultured pluripotent stem cell population is a distance from a bottom surface of the cultured pluripotent stem cell population attached to a culture vessel to the surface of the cultured pluripotent stem cell population not attached to the culture vessel and roughly parallel to the bottom surface.
4. The method according to claim 3 , wherein the calculated value for the flatness is standardized with a mean value of height of the surface of one cultured pluripotent stem cell or the surface of the cultured pluripotent stem cell population.
5. The method according to claim 1 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined by calculating a mean square height difference (MSHD) represented by formula (1):
MSHD(Δ r )=<( z ( x 1 ,y 1 )− z ( x 2 ,y 2 )) 2 > (I)
wherein z (x 1 , y 1 ) is a height of a surface of the cultured pluripotent stem cell or the cultured pluripotent stem cell population at a first point, z (x 2 , y 2 ) is a height of a surface of the cultured pluripotent stem cell or the cultured pluripotent stem cell population at a second point, and < > is an ensemble average, wherein Δr is distance in a horizontal direction between the first and the second point, and wherein (x 1 , y 1 ) and (x 2 , y 2 ) are in any combination that satisfies formula (II):
Δ r =(( x 1 −x 2 ) 2 +( y 1 −y 2 ) 2 ) 1/2 (II).
6. The method according to claim 1 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined using a reflection quantitative phase microscope.
7. The method according to claim 1 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined in a microscopic visual field unit.
8. The method according to claim 7 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined by calculating a standard deviation of height of the surface of one cultured pluripotent stem cell or the surface of the cultured pluripotent stem cell population,
wherein the height of the surface of one cultured pluripotent stem cell is a distance from a bottom surface of the cultured pluripotent stem cell attached to a culture vessel to the surface of the cultured pluripotent stem cell not attached to the culture vessel and roughly parallel to the bottom surface, and
wherein the height of the surface of the cultured pluripotent stem cell population is a distance from a bottom surface of the cultured pluripotent stem cell population attached to a culture vessel to the surface of the cultured pluripotent stem cell population not attached to the culture vessel and roughly parallel to the bottom surface.
9. The method according to claim 7 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined by calculating a mean square height difference (MSHD) represented by formula (1):
MSHD(Δ r )=<( z ( x 1 ,y 1 )− z ( x 2 ,y 2 )) 2 > (I)
wherein z (x 1 , y 1 ) is a height of a surface of the cultured pluripotent stem cell or the cultured pluripotent stem cell population at a first point, z (x 2 , y 2 ) is a height of a surface of the cultured pluripotent stem cell or the cultured pluripotent stem cell population at a second point, and < > is an ensemble average, wherein Δr is distance in a horizontal direction between the first and the second point, and wherein (x 1 , y 1 ) and (x 2 , y 2 ) are in any combination that satisfies formula (II):
Δ r =(( x 1 −x 2 ) 2 +( y 1 −y 2 ) 2 ) 1/2 (II).
10. The method according to claim 7 , wherein the calculated value for the flatness is standardized with a mean value of height of the surface of one cultured pluripotent stem cell or the surface of the cultured pluripotent stem cell population.
11. The method according to claim 7 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined using a reflection quantitative phase microscope.
12. The method according to claim 1 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined in a region of interest unit within a microscopic visual field.
13. The method according to claim 12 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined by calculating a standard deviation of height of the surface of one cultured pluripotent stem cell or the surface of the cultured pluripotent stem cell population,
wherein the height of the surface of one cultured pluripotent stem cell is a distance from a bottom surface of the cultured pluripotent stem cell attached to a culture vessel to the surface of the cultured pluripotent stem cell not attached to the culture vessel and roughly parallel to the bottom surface, and
wherein the height of the surface of the cultured pluripotent stem cell population is a distance from a bottom surface of the cultured pluripotent stem cell population attached to a culture vessel to the surface of the cultured pluripotent stem cell population not attached to the culture vessel and roughly parallel to the bottom surface.
14. The method according to claim 12 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined by calculating a mean square height difference (MSHD) represented by formula (1):
MSHD(Δ r )=<( z ( x 1 ,y 1 )− z ( x 2 ,y 2 )) 2 > (I)
wherein z (x 1 , y 1 ) is a height of a surface of the cultured pluripotent stem cell or the cultured pluripotent stem cell population at a first point, z (x 2 , y 2 ) is a height of a surface of the cultured pluripotent stem cell or the cultured pluripotent stem cell population at a second point, and < > is an ensemble average, wherein Δr is distance in a horizontal direction between the first and the second point, and wherein (x 1 , y 1 ) and (x 2 , y 2 ) are in any combination that satisfies formula (II):
Δ r =(( x 1 −x 2 ) 2 +( y 1 −y 2 ) 2 ) 1/2 (II).
15. The method according to claim 12 , wherein the calculated value for the flatness is standardized with a mean value of height of the surface of one cultured pluripotent stem cell or the surface of the cultured pluripotent stem cell population.
16. The method according to claim 12 , wherein the flatness of the cultured pluripotent stem cell or the cultured pluripotent stem cell population is determined using a reflection quantitative phase microscope.