IP Library › Granted Patent US 9,802,941
Granted Patent B2
US 9,802,941 · App. 14/836,397 · Granted Oct 31, 2017

Compounds and methods for inhibiting histone demethylases

Inventors: Thomas Boesen (Københan Ø, DK); Marc Labelle (Basking Ridge, NJ); Ying Yang (Fremont, CA); Neerja Saraswat (Winnipeg, CA); Dastagiri Dudekula (Winnipeg, CA); Cyril John Cook (Winnipeg, CA); Ramkrishna Reddy Vakiti (Winnipeg, CA); Rui Zhang (Winnipeg, CA); Farman Ullah (Winnipeg, CA)
Assignee: GILEAD SCIENCES, INC.
C07D487/04A61K31/444A61K31/4412A61K31/4439A61K31/4985A61K31/501A61K31/506A61K31/5355C07D213/38C07D213/48C07D213/56C07D213/79C07D401/04C07D401/12C07D401/14C07D409/14C07D413/04C07D413/12C07D413/14
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Quick Facts
Patent No.
US 9,802,941
App. No.
14/836,397
Granted
Oct 31, 2017
Kind
B2
Abstract

The present application relates to compounds being of Formula (I), (II), (III), (IV), (V), (VI), (IIIa), (IIIb), (IIIc), (IIId), (IIIe), (IIIf), and (IIIg). Compounds of Formula (I) have the structure: wherein Q, R 1 , R 18 , R 19 , M, A and Y are as defined herein. The compounds of the application can modulate the activity of histone demethylases (HDMEs), and can be useful for the prevention and/or treatment of diseases in which genomic dysregulation is involved in the pathogenesis, e.g., cancer.

Claims (132)

1. A compound being of Formula (I):

wherein:

Q is selected from CO 2 H, CO 2 R 20 , —CH═NR 12 , —W, —CH 2 NHR 13 , —CH═O and —CH(OR 17 ) 2 ;

M is CH or N;

A is selected from —C(R 2 ) 2 C(O)—, —C(R 2 ) 2 C(R 2 ) 2 C(O)—, C 3-10 alkyl, —Z—C 3-10 cycloalkylene, —Z-heterocyclylene, —Z-heteroarylene and —Z-arylene, wherein the C 3-10 alkyl, —Z-cycloalkylene, —Z-heterocyclylene, —Z-heteroarylene and —Z-arylene are optionally substituted with one or more R 3 , or A and Y form a C 3-10 cycloalkyl or heterocyclic ring;

Y is selected from —H, —NR 6 R 7 , —OR 7 , C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, heterocyclyl, heteroaryl and aryl, wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more R 3 ;

R 1 is selected from —H, C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —NR 6 R 7 , —F and C 3-6 cycloalkyl; or R 1 , together with A-Y and the nitrogen atom to which it is attached, forms a nitrogen-containing heterocyclic ring optionally substituted with one or more substituents independently selected from C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —NR 6 R 7 , —F and C 3-6 cycloalkyl; or R 1 and R 18 , together with the atoms to which they are attached, form a nitrogen-containing heterocyclic ring optionally substituted with one or more substituents independently selected from C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —NR 6 R 7 , —F and C 3-6 cycloalkyl;

Each R 2 is independently selected from —H, C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —F, C 3-6 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 ; or two R 2 substituents on adjacent carbon atoms, together with the carbon atoms to which they are attached, form a C 4-10 cycloalkyl or heterocyclic ring; or two R 2 substituents on the same carbon atom, together with the carbon atom to which they are attached, form a C 3-10 cycloalkyl or heterocyclic ring; or R 2 and Y, together with the carbon atoms to which they are attached, form a C 4-10 cycloalkyl or heterocyclic ring;

each R 3 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 , wherein the heterocyclyl is optionally substituted with one or more R 4 , and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ; or two R 3 on the same carbon atom may, together with the carbon atom to which they are attached, form a C 3-10 cycloalkyl or heterocyclic ring;

Z is selected from a single bond, C 1-4 alkylene, heterocyclylene and C 3-6 cycloalkylene;

each R 4 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 1-4 alkoxy, C 3-10 cycloalkyl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—C(═O)—H, —OR 7 , halogen, —SR 7 , —SOR 7 , —SO 2 R 7 , —SO 2 NR 6 R 7 , and —COOR 7 ;

each R 5 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 1-4 alkoxy, C 3-6 cycloalkyl, —CN, —F, —Cl, —Br, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—C(═O)—H, —SR 7 , —SOR 7 , —SO 2 R 7 , —SO 2 NR 6 R 7 , and —COOR 7 ;

each R 6 and R 7 is independently selected from —H, C 1-8 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-heteroaryl and —Z-aryl, wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more R 8 ; or R 6 and R 7 may, together with the N-atom to which they are attached, form a heterocyclic ring optionally substituted with one or more R 8 ;

each R 8 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-heteroaryl, —Z-aryl, —Z—NR 10 R 11 , —Z—C(═O)—NR 10 R 11 , —Z—OR 9 , halogen, —CN, —Z—SR 9 , —Z—SOR 9 , —Z—SO 2 R 9 and —Z—COOR 9 , wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more substituents independently selected from C 1-4 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 3-6 cycloalkyl, —Z-heterocyclyl, —Z-heteroaryl, —Z-aryl, —Z—NR 10 R 11 , —Z—C(═O)—NR 10 R 11 , —Z—OR 9 , halogen, —CN, —Z—SR 9 , —Z—SOR 9 , —Z—SO 2 R 9 and —Z—COOR 9 ; wherein the heterocyclyl is optionally substituted with one or more R 4 and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ;

each R 9 is independently selected from —H, C 1-8 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, and —Z-heteroaryl, wherein the heterocyclyl is optionally substituted with one or more R 4 and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ;

each of R 10 and R 11 is independently selected from —H, C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, heterocyclyl, heteroaryl, and C 6-14 aryl, wherein the heterocyclyl is optionally substituted with one or more R 4 and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ; or R 10 and R 11 may, together with the N-atom to which they are attached, form a 5- to 7-membered heterocyclic ring optionally substituted with one or more R 4 ;

when Q is —CH═NR 12 , R 12 is selected from C 1-10 alkyl, C 2-10 alkenyl, C 2-10 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 and —Z—COOR 7 , wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more R 3 ;

when Q is —CH 2 NHR 13 , R 13 is selected from —H, —C(O)R 7 , —C(O)C(O)R 7 , —C(O)C(O)OR 7 , C 1-8 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, —Z—heterocyclyl, and —Z-monocyclic-heteroaryl, wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, and heteroaryl are optionally substituted with one or more R 8 ; or R 13 is —CR 14 R 15 NR 6 R 7 , —CR 14 R 15 CN, or —CR 14 R 15 OR 7 , wherein each R 14 and R 15 is independently selected from —H, C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, heterocyclyl, heteroaryl, and C 6-14 aryl, wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more R 3 ; or wherein R 14 and R 15 together with the intervening carbon atom form a C 3-10 cycloalkyl or C 5-10 -cycloalkenyl ring optionally substituted with one or more R 3 ;

when Q is W, W is selected from a 1,3-diazacycloalk-2-yl group which is N-substituted with R 16 , optionally further substituted with one or more R 3 , and optionally containing one or two oxo groups; a 1,3-thiazacycloalk-2-yl group which is N-substituted with R 16 , optionally further substituted with one or more R 3 and optionally containing one or two oxo groups; and a 1,3-oxazacycloalk-2-yl group which is N-substituted with R 16 , optionally further substituted with one or more R 3 , and optionally containing one or two oxo groups, wherein in all three instances two R 3 on the same carbon atom may, together with the carbon atom to which they are attached, form a C 3-10 cycloalkyl or heterocyclic ring;

R 16 is selected from —H, —C(O)R 7 , —C(O)C(O)R 7 and —C(O)C(O)OR 7 ;

when Q is —CH(OR 17 ) 2 , each R 17 independently is R 3 ; or wherein two R 17 together with the intervening —O—CH—O— form a heterocyclic ring optionally substituted with one or more R 3 and optionally containing one to two oxo groups;

R 18 is selected from —H, C 1-6 alkyl, C 1-6 fluoroalkyl, C 1-6 hydroxyalkyl, C 2-7 alkenyl, C 2-7 alkynyl, C 3-7 cycloalkyl, and C 3-7 oxyalkyl; or R 18 and A, together with the atoms to which they are attached, form a heterocyclic ring; or R 18 and Y, together with the atoms to which they are attached, form a heterocyclic ring; or R 18 and R 1 , together with the atoms to which they are attached, form a heterocyclic ring;

R 19 is selected from C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, C 3-6 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 ; and may optionally form a cyclophane structure by attaching to Y or A; and

when Q is CO 2 R 20 , R 20 is selected from C 1-8 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, and —Z-heteroaryl, wherein the C 1-8 alkyl, C 3-10 cycloalkyl and heterocyclyl are optionally substituted with one or more R 4 , and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 as defined above;

or a pharmaceutically acceptable salt or solvate thereof.

2. The compound of claim 1 , wherein A is selected from —Z-heterocyclylene, —Z-arylene, and —Z-heteroarylene.

3. The compound of claim 1 , wherein Y is —H or C 1-8 alkyl.

4. The compound claim 1 , wherein R 3 is —Z-aryl.

5. The compound claim 1 , wherein Z is a single bond or C 1-4 alkylene.

6. The compound claim 1 , wherein R 1 is —H.

7. The compound claim 1 , wherein R 1 is —H.

8. The compound claim 1 , wherein R 19 is C 1-8 alkyl optionally substituted with one —Z—OR 7 .

9. The compound of claim 1 , wherein Q is CO 2 H.

10. The compound of claim 1 being of Formula (II),

or a pharmaceutically acceptable salt or solvate thereof,

wherein:

D is Z-heteroarylene optionally substituted with one to three R 23 ;

E is Z-aryl or Z-heteroaryl optionally substituted with one to three R 24 ;

each R 23 is independently selected from —H, —NR 6 R 7 , C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, C 5-10 heterocyclyl, C 5-14 heteroaryl and C 6-14 aryl;

each R 24 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 1-4 alkoxy, C 3-6 cycloalkyl, —CN, —F, —Cl, —Br, carbamoyl and —OH; and

n is 0 to 3.

11. The compound of claim 10 , wherein D is imidazolyl optionally substituted with one to three R 23 .

12. The compound of claim 10 , wherein D is pyridinyl optionally substituted with one to three R 23 .

13. The compound of claim 10 , wherein D is triazolyl optionally substituted with one to three R 23 .

14. The compound of claim 10 , wherein E is Z-aryl optionally substituted with one to three R 24 .

15. The compound of claim 10 , wherein R 19 is —CH 2 OH.

16. The compound of claim 10 , wherein R 19 is methyl.

17. The compound of claim 10 , wherein Q is CO 2 H.

18. The compound of claim 1 being of Formula (III),

or a pharmaceutically acceptable salt or solvate thereof, wherein:

Z is N or CR Z ;

R N , R C , and R Z are each independently selected from —H, C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 , wherein the heterocyclyl is optionally substituted with one or more R 4 , and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ; and

n is 1 or 2.

19. The compound of claim 18 , wherein Q is CO 2 H.

20. The compound of claim 1 being of Formula (IV),

or a pharmaceutically acceptable salt or solvate thereof, wherein:

R 30 and R 31 are independently selected from —H, C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 , wherein the heterocyclyl is optionally substituted with one or more R 4 , and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ; and

n is 1 or 2.

21. The compound of claim 20 , wherein Q is CO 2 H.

22. The compound of claim 1 being of Formula (V),

or a pharmaceutically acceptable salt or solvate thereof, wherein:

R 32 , R 33 , and R 34 are independently selected from —H, C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 , wherein the heterocyclyl is optionally substituted with one or more R 4 , and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 .

23. The compound of claim 22 , wherein Q is CO 2 H.

24. A compound being of Formula (VI):

or a pharmaceutically acceptable salt or solvate thereof,

wherein:

M is CH or N;

A is selected from —C(R 2 ) 2 C(O)—, —C(R 2 ) 2 C(R 2 ) 2 C(O)—, C 3-10 alkyl, —Z—C 3-10 cycloalkylene, —Z-heterocyclylene, —Z-heteroarylene and —Z-arylene, wherein the C 3-10 alkyl, —Z-cycloalkylene, —Z-heterocyclylene, —Z-heteroarylene and —Z-arylene are optionally substituted with one or more R 3 , or A and Y form a C 3-10 cycloalkyl or heterocyclic ring;

Y is selected from —H, —NR 6 R 7 , —OR 7 , C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, heterocyclyl, heteroaryl and aryl, wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more R 3 ;

R 1 is selected from —H, C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —NR 6 R 7 , —F and C 3-6 cycloalkyl; or R 1 , together with A-Y and the nitrogen atom to which it is attached, forms a nitrogen-containing heterocyclic ring optionally substituted with one or more substituents independently selected from C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —NR 6 R 7 , —F and C 3-6 cycloalkyl; or R 1 and R 18 , together with the atoms to which they are attached, form a nitrogen-containing heterocyclic ring optionally substituted with one or more substituents independently selected from C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —NR 6 R 7 , —F and C 3-6 cycloalkyl;

Each R 2 is independently selected from —H, C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —F, C 3-6 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 ; or two R 2 substituents on adjacent carbon atoms, together with the carbon atoms to which they are attached, form a C 4-10 cycloalkyl or heterocyclic ring; or two R 2 substituents on the same carbon atom, together with the carbon atom to which they are attached, form a C 3-10 cycloalkyl or heterocyclic ring; or R 2 and Y, together with the carbon atoms to which they are attached, form a C 4-10 cycloalkyl or heterocyclic ring;

each R 3 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 , wherein the heterocyclyl is optionally substituted with one or more R 4 , and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ; or two R 3 on the same carbon atom may, together with the carbon atom to which they are attached, form a C 3-10 cycloalkyl or heterocyclic ring;

Z is selected from a single bond, C 1-4 alkylene, heterocyclylene and C 3-6 cycloalkylene;

each R 4 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 1-4 alkoxy, C 3-10 cycloalkyl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—C(═O)—H,

—OR 7 , halogen, —SR 7 , —SOR 7 , —SO 2 R 7 , —SO 2 NR 6 R 7 , and —COOR 7 ;

each R 5 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 1-4 alkoxy, C 3-6 cycloalkyl, —CN, —F, —Cl, —Br, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—C(═O)—H, —OR 7 , —SR 7 , —SOR 7 , —SO 2 R 7 , —SO 2 NR 6 R 7 , and —COOR 7 ;

each R 6 and R 7 is independently selected from —H, C 1-8 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-heteroaryl and —Z—aryl, wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more R 8 ; or R 6 and R 7 may, together with the N-atom to which they are attached, form a heterocyclic ring optionally substituted with one or more R 8 ;

each R 8 is independently selected from C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-heteroaryl, —Z-aryl, —Z—NR 10 R 11 , —Z—C(═O)—NR 10 R 11 , —Z—OR 9 , halogen, —CN, —Z—SR 9 , —Z—SOR 9 , —Z—SO 2 R 9 and —Z—COOR 9 , wherein the alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, heteroaryl and aryl are optionally substituted with one or more substituents independently selected from C 1-4 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 3-6 cycloalkyl, —Z-heterocyclyl, —Z-heteroaryl, —Z-aryl, —Z—NR 10 R 11 , —Z—C(═O)—NR 10 R 11 , —Z—OR 9 , halogen, —CN, —Z—SR 9 , —Z—SOR 9 , —Z—SO 2 R 9 and —Z—COOR 9 ; wherein the heterocyclyl is optionally substituted with one or more R 4 and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ;

each R 9 is independently selected from —H, C 1-8 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, —Z-heterocyclyl, —Z-aryl, and —Z-heteroaryl, wherein the heterocyclyl is optionally substituted with one or more R 4 and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ;

each of R 10 and R 11 is independently selected from —H, C 1-6 alkyl, C 1-4 fluoroalkyl, C 1-4 hydroxyalkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, heterocyclyl, heteroaryl, and C 6-14 aryl, wherein the heterocyclyl is optionally substituted with one or more R 4 and wherein the heteroaryl and aryl are optionally substituted with one or more R 5 ; or R 10 and R 11 may, together with the N-atom to which they are attached, form a 5- to 7-membered heterocyclic ring optionally substituted with one or more R 4 ;

R 18 is selected from —H, C 1-6 alkyl, C 1-6 fluoroalkyl, C 1-6 hydroxyalkyl, C 2-7 alkenyl, C 2-7 alkynyl, C 3-7 cycloalkyl, and C 3-7 oxyalkyl; or R 18 and A, together with the atoms to which they are attached, form a heterocyclic ring; or R 18 and Y, together with the atoms to which they are attached, form a heterocyclic ring; or R 18 and R 1 , together with the atoms to which they are attached, form a heterocyclic ring;

R 19 is selected from C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, and C 3-10 cycloalkyl, wherein the alkyl, alkenyl, alkynyl and cycloalkyl are optionally substituted with one or more substituents independently selected from aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, C 3-6 cycloalkyl, —Z-heterocyclyl, —Z-aryl, —Z-heteroaryl, —Z—NR 6 R 7 , —Z—C(═O)—NR 6 R 7 , —Z—NR 6 —C(═O)—R 7 , —Z—C(═O)—R 7 , —Z—OR 7 , halogen, —Z—SR 7 , —Z—SOR 7 , —Z—SO 2 R 7 , —Z—SO 2 NR 6 R 7 and —Z—COOR 7 and may optionally form a cyclophane structure by attaching to Y or A; and

wherein:

R 21 is (R 22 ) 2 N— or R 22 O, wherein R 22 is C 1-8 alkyl, C 2-8 alkenyl, C 2-8 alkynyl, C 3-10 cycloalkyl, and aryloxy optionally substituted with one or more substituents independently selected from —OH, aryl, C 1-6 alkoxy, heteroaryl, aryloxy, heteroaryloxy, —F, a sulfonamide moiety, and C 3-6 cycloalkyl; wherein one R 22 in (R 22 ) 2 N—is optionally —H.

25. The compound of claim 24 , wherein:

M is CH;

A is selected from —Z-heterocyclylene, —Z-arylene, and —Z-heteroarylene;

Y is selected from —H and C 1-8 alkyl;

R 1 is H;

each R 3 is independently selected from —Z-heterocyclyl, —Z-aryl, and —Z-heteroaryl;

R 18 is H;

Z is selected from a single bond and C 1-4 alkylene; and

R 19 is methyl.

26. The compound of claim 24 , wherein:

M is CH;

A is selected from —Z-heterocyclylene, —Z-arylene, and —Z-heteroarylene;

Y is selected from —H and C 1-8 alkyl;

R 1 is H;

each R 3 is independently selected from —Z-heterocyclyl, —Z-aryl, and —Z-heteroaryl;

R 18 is H;

Z is selected from a single bond and C 1-4 alkylene; and

R 19 is —CH 2 OH.

27. The compound of claim 24 , wherein R 21 is (R 22 ) 2 N—.

28. The compound of claim 27 , wherein one R 22 is —H, and the other R 22 is C 1-8 alkyl or C 3-10 cycloalkyl.

29. The compound of claim 24 , wherein R 21 is R 22 O.

30. The compound of claim 29 , wherein R 22 is C 1-8 alkyl optionally substituted with one or more —F.

31. The compound of claim 1 being of Formula (IIIa),

or a pharmaceutically acceptable salt or solvate thereof.

32. The compound of claim 1 being of Formula (IIIb),

or a pharmaceutically acceptable salt or solvate thereof.

33. The compound of claim 1 being of Formula (IIIc),

or a pharmaceutically acceptable salt or solvate thereof.

34. The compound of claim 1 being of Formula (IIId),

or a pharmaceutically acceptable salt or solvate thereof.

35. The compound of claim 1 being of Formula (IIIe),

or a pharmaceutically acceptable salt or solvate thereof.

36. The compound of claim 1 being of Formula (IIIf),

or a pharmaceutically acceptable salt or solvate thereof.

37. The compound of claim 1 being of Formula (IIIg),

or a pharmaceutically acceptable salt or solvate thereof.

38. The compound of claim 1 , selected from any one of the following:

or a pharmaceutically acceptable salt or solvate thereof.

39. The compound of claim 1 , selected from any one of the following:

or a pharmaceutically acceptable salt or solvate thereof.

40. A pharmaceutical composition comprising at least one compound of claim 1 , or a pharmaceutically acceptable salt or solvate thereof, and optionally one or more pharmaceutically acceptable excipients, diluents and/or carriers.

41. The pharmaceutical composition according to claim 40 , which comprises one or more further active substances.

42. A method of reversing, alleviating, or inhibiting the process of a HDME-dependent disease in a subject in need thereof, wherein said method comprises administering to said subject a therapeutically effective amount of at least one compound according to claim 1 , or a pharmaceutically acceptable salt or solvate thereof, to alleviate the symptoms of the HDME-dependent disease or to eliminate the HDME-dependent disease.

43. A method of inhibiting a HDME, comprising contacting a cell with a compound of claim 1 in an amount effective to produce a concentration sufficient to inhibit the demethylation of a histone in a cell.

44. The method of claim 43 , wherein the HDME is a member of the KDM7 family, PHF8 family, KDM6 family, KDM5 family, KDM4 family, or KDM2 family.

45. The method of claim 43 , wherein the HDME is KDM4C, KDM2B, PHF8, KDM6A, or KDM5B.

46. A pharmaceutical composition comprising at least one compound of claim 24 , or a pharmaceutically acceptable salt or solvate thereof, and optionally one or more pharmaceutically acceptable excipients, diluents and/or carriers.

47. A method of reversing, alleviating, or inhibiting the process of a HDME-dependent disease in a subject in need thereof, wherein said method comprises administering to said subject a therapeutically effective amount of at least one compound according to claim 24 , or a pharmaceutically acceptable salt or solvate thereof, to alleviate the symptoms of the HDME-dependent disease or to eliminate the HDME-dependent disease.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 10, 2017
From: BOESEN, THOMAS; LABELLE, MARC; YANG, YING; SARASWAT, NEERJA; DUDEKULA, DASTAGIRI; COOK, CYRIL JOHN; VAKITI, RAMKRISHNA REDDY; ZHANG, RUI; ULLAH, FARMAN
To: EPITHERAPEUTICS APS
Reel/Frame 041223/0864 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 10, 2016
From: EPITHERAPEUTICS, APS
To: GILEAD SCIENCES, INC.
Reel/Frame 039398/0311 →
Continuity (2)
Provisional Application 62042717 · Aug 27, 2014
Related Publication 20160102096A1 · Apr 14, 2016