G-protein coupled receptor (GPCR)-based biosensors and uses thereof
Provided herein are GPCR-based chemical biosensors that can have a sensing unit, a processing unit, and a response unit that can be used to detect a chemical of interest. Also provided herein are methods of making and using the GPCR-based chemical biosensors.
1. An engineered yeast cell comprising:
a sensing unit, the sensing unit comprising:
a G-protein coupled receptor (GPCR);
a synthetic processing unit, the synthetic processing unit comprising:
a signal transduction pathway, wherein the signal transduction pathway comprises a synthetic transcription factor selected from the group consisting of STF1, STF2, SFT3 and combinations thereof; and
a synthetic response unit, the synthetic response unit comprising:
a recombinant signal molecule gene, where the recombinant signal molecule gene is operatively coupled to a synthetic promoter that is responsive to the synthetic processing unit, wherein the synthetic promoter is selected from the group consisting of: pGAL45x, pLExA4x, pCRE, and combinations thereof,
wherein the sensing unit is in biologic communication with the processing unit and the processing unit is in biologic communication with the response unit.
2. The engineered yeast cell of claim 1 , wherein the GPCR is capable of binding a medium chain fatty acid.
3. The engineered yeast cell of claim 1 , wherein the GPCR is an olfactory GPCR.
4. The engineered yeast cell of claim 1 , further comprising an amplification unit, wherein the amplification unit is biologically coupled to the response unit.
5. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor has a sequence that is about 90%-100% identical to any one of SEQ ID NOs: 51-53.
6. The engineered yeast cell of claim 1 , wherein the synthetic promoter has a sequence that is about 90% to 100% identical to any one of SEQ ID NOs: 54-56.
7. The engineered yeast cell of claim 1 , wherein the recombinant signal molecule gene is a gene encoding a fluorescent protein.
8. The engineered yeast cell of claim 1 , wherein the yeast cell has at least a ste12 deletion.
9. The engineered yeast cell of claim 1 , wherein the recombinant signal molecule gene is a biosynthetic gene.
10. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor is STF1 and the synthetic promoter is pGAL45x.
11. The engineered yeast cell of claim 10 , wherein STF1 has a sequence that is about 90%-100% identical to SEQ ID NO: 51 and pGAL45x has a sequence that is about 90%-100% identical to SEQ ID NO: 54.
12. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor is STF2 and the synthetic promoter is pLexA4x.
13. The engineered yeast cell of claim 12 , wherein STF2 has a sequence that is about 90%-100% identical to SEQ ID NO: 52 and pGAL45x has a sequence that is about 90%-100% identical to SEQ ID NO: 55.
14. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor is STF3 and the synthetic promoter is pCRE.
15. The engineered yeast cell of claim 14 , wherein STF3 has a sequence that is about 90%-100% identical to SEQ ID NO: 53 and pCRE has a sequence that is about 90%-100% identical to SEQ ID NO: 56.
16. A method comprising:
contacting an engineered yeast cell with a sample, wherein the yeast cell comprises
a sensing unit, the sensing unit comprising:
a G-protein coupled receptor (GPCR);
a synthetic processing unit, the synthetic processing unit comprising:
a signal transduction pathway, wherein the signal transduction pathway comprises a synthetic transcription factor selected from the group consisting of STF1, STF2, SFT3 and combinations thereof; and
a synthetic response unit, the synthetic response unit comprising:
a recombinant signal molecule gene, wherein the recombinant signal molecule gene is operatively coupled to a synthetic promoter that is responsive to the synthetic processing unit, wherein the synthetic promoter is selected from the group consisting of: pGAL45x, pLExA4x, pCRE, and combinations thereof,
wherein the sensing unit is in biologic communication with the processing unit and the processing unit is in biologic communication with the response unit.
17. The method of claim 16 , wherein the step of contacting the engineered yeast cell with a sample further comprises incubating the engineered yeast cell with a biofuel producing cell.
18. The method of claim 16 , wherein the synthetic transcription factor is STF1 and the synthetic promoter is pGAL45x.
19. The method of claim 16 , wherein the synthetic transcription factor is SFT2 and the synthetic promoter is pLexA4x.
20. The method of claim 16 , wherein the synthetic transcription factor is SFT3 and the synthetic promoter is pCRE.