Isolation packer with automatically closing alternate path passages

1. An isolation method, comprising:

running in an assembly of screens separated by at least one packer with at least one auxiliary conduit passing through said packer and extending into adjacent zones defined by said packer, said conduit comprising a wall to define a passage;

setting said at least one packer subsequent to said running in to thereby isolate said adjacent zones from each other;

gravel packing at least one of said adjacent zones;

after said gravel packing is completed, automatically closing said conduit principally in response to a thermal signal from surrounding fluid in said zones and outside said conduit without the surrounding fluid outside said conduit contacting a closure within said conduit, said closing occurring by shape change of said closure at a predetermined temperature.

2. The method of claim 1 , comprising:

running said conduit through a body or a seal of said packer.

3. The method of claim 1 , comprising:

using a shape memory polymer or alloy as part of said conduit for selective closure of said conduit.

4. The method of claim 3 , comprising:

raising the temperature of said polymer or alloy above the critical temperature for a shape change that results in closure of said conduit.

5. The method of claim 4 , comprising:

adding or removing heat from well fluids in said zones to control the timing of said shape change.

6. The method of claim 4 , comprising:

using a heater or an exothermic reaction to accelerate a closure of said conduit.

7. The method of claim 1 , comprising:

closing said conduit in one or more zones.

8. The method of claim 1 , comprising:

providing multiple conduits extending into multiple zones.

9. The method of claim 8 , comprising:

making closures or conduit material in different zones responsive to change shape at the same or different temperatures.

10. The method of claim 9 , comprising:

controlling the sequence of conduit closing to occur in an uphole, downhole or random pattern.

11. The method of claim 1 , comprising:

gravel packing with said packer set or unset.

12. The method of claim 1 , comprising:

extending multiple conduits into multiple zones through a plurality of packers;

automatically closing said multiple conduits thermally for isolation of a plurality of said zones from each other.

13. The method of claim 1 , comprising:

using, in conjunction with said closure in said conduit that changes shape at a predetermined temperature to close said conduit, a conduit wall material changing shape.

14. An isolation method, comprising:

running in an assembly of screens separated by at least one packer with at least one auxiliary conduit passing through said packer and extending into adjacent zones defined by said packer, said conduit formed by a wall inside surface that defines an unobstructed passage having an initial dimension and said wall having an outside surface with said inside and outside surfaces being a shape memory material;

setting said at least one packer subsequent to said running in to thereby isolate said adjacent zones from each other;

gravel packing at least one of said adjacent zones;

allowing some gravel to contact said inside surface defining said passage during said gravel packing;

collapsing, after said gravel packing and in response to a thermal signal, said inside and outside surfaces of said wall to reduce the internal dimension of said unobstructed passage by moving spaced portions of said inside and outside surfaces at a predetermined temperature, said collapsing closing said passage defined by said conduit as portions of said inside and outside surfaces that were spaced from each other to define said initial dimension move to where said inside surfaces contact each other to obstruct said passage to reduce said initial dimension.