Alkynyl sugar analogs for labeling and visualization of glycoconjugates in cells
Methods for metabolic oligosaccharide engineering that incorporates derivatized alkyne-bearing sugar analogs as “tags” into cellular glycoconjugates are disclosed. Alkynyl derivatized Fuc and alkynyl derivatized ManNAc sugars are incorporated into cellular glycoconjugates. Chemical probes comprising an azide group and a visual or fluorogenic probe and used to label alkyne-derivatized sugar-tagged glycoconjugates are disclosed. Chemical probes bind covalently to the alkynyl group by Cu(I)-catalyzed [3+2] azide-alkyne cycloaddition and are visualized at the cell surface, intracellularly, or in a cellular extract. The labeled glycoconjugate is capable of detection by flow cytometry, SDS-PAGE, Western blot, ELISA, confocal microscopy, and mass spectrometry.
1. A composition comprising an alkynyl-derivatized N-acetylmannosamine (ManNAc) or an alkynyl-derivatized N-acetylmannosamine derivative selected from the group consisting of compounds having the structure of:
2. The composition of claim 1 , wherein the alkynyl-derivatized N-acetylmannosamine derivative is 1,3,4,6-tetra-O-acetyl-N-4-pentynoylmannosamine 4:
3. The composition of claim 1 , wherein the alkynyl-derivatized N-acetylmannosamine (ManNAc) or alkynyl-derivatized N-acetylmannosamine derivative is incorporated into a cellular glycan.
4. The composition of claim 3 , wherein the alkynyl-derivatized N-acetylmannosamine (ManNAc) or an alkynyl-derivatized N-acetylmannosamine derivative is incorporated into the cellular glycan and converted to an alkynyl derivatized CMP-sialic acid (CMP-NeuAc):
5. The composition of claim 1 , wherein the alkynyl-derivatized N-acetylmannosamine (ManNAc) or the alkynyl-derivatized N-acetylmannosamine derivative is biorthogonal.
6. The composition of claim 1 , further comprising:
an azido-derivatized probe coupled to the alkynyl functional group.
7. The composition of claim 6 , wherein the probe is coupled to the alkynyl functional group by Cu(I) catalyzed [3+2] azide-alkyne cycloaddition.
8. The composition of claim 6 , wherein the probe comprises a directly or indirectly detectable moiety.
9. The composition of claim 8 , wherein the detectable moiety is selected from the group consisting of: a fluorescent moiety, a fluorogenic moiety, a moiety detectable by biotin-avidin interaction, a moiety detectable by antigen-antibody interaction, and a coumarin.
10. The composition of claim 9 , wherein the probe comprises a fluorogenic detectable moiety which turns fluorescent upon Cu(I) catalyzed [3+2] azide-alkyne cycloaddition with the alkynyl functional group.
11. The composition of claim 9 , wherein the probe comprises a N-alkyl-1,8-naphthalimide fluorogenic detectable moiety.
12. The composition of claim 2 , wherein the 1,3,4,6-tetra-O-acetyl-N-4-pentynoylmannosamine 4,
is prepared by a process comprising:
(a) providing D-mannosamine hydrochloride;
(b) reacting the D-mannosamine hydrochloride with N-succinimidyl 4-pentynoate to yield alkynyl ManNAc derivative; and
(c) acetylating the alkynyl ManNAc derivative to form the 1,3,4,6-tetra-O-acetyl-N-4-pentynoylmannosamine 4.
13. A kit comprising the alkynyl-derivatized sugar 1,3,4,6-tetra-O-acetyl-N-4-pentynoylmannosamine 4 of claim 2 , wherein the sugar is capable of incorporation into a cellular glycan.
14. The compound 1,3,4,6-tetra-O-acetyl-N-4-pentynoylmannosamine 4:
15. The compound CMP-sialic acid (CMP-NeuAc):
16. A composition comprising a tagged glycoconjugate wherein the tagged glycoconjugate is linked to a probe through a triazole moiety wherein the tagged glycoconjugate is provided by a process comprising:
a) providing the L-enantiomer of the alkynyl derivatized sugar 4 having the structure
b) metabolically incorporating the alkynyl derivatized sugar 4 into a cellular glycan of a cell thereby producing a tagged glyconjugate in the cell wherein the tagged glycoconjugate comprises a glycan portion, a conjugate portion from the cellular glycan and the alkyne functional group from the alkyne derivatized sugar, and
c) providing a probe having an azide group and linking the probe to the alkyne functional group of the tagged glycoconjugate through a triazole moiety by an azide-alkyne cycloaddition reaction to provide the tagged glycoconjugate linked to the probe through the triazole moiety.