RlmA-inactivated filamentous fungal host cell
The present invention relates to RImA-inactivated filamentous fungal cells secreting a polypeptide of interest and methods of producing a secreted polypeptide of interest in said cells as well as methods of producing said cells.
1. An Aspergillus host cell comprising a heterologous polynucleotide encoding a secreted polypeptide of interest and comprising an inactivated rImA gene or homologue thereof, wherein said rImA gene or homologue thereof encodes an RImA polypeptide having at least 80% amino acid sequence identity with SEQ ID NO:3.
2. The host cell of claim 1 , wherein the secreted polypeptide of interest is an enzyme.
3. The host cell of claim 1 , wherein the rImA gene or homologue thereof comprises or consists of a genomic nucleotide sequence at least 80% identical to the genomic DNA sequence shown in SEQ ID NO: 1.
4. The host cell of claim 1 , wherein the rImA gene or homologue thereof comprises or consists of a genomic nucleotide sequence, the cDNA sequence of which is at least 80% identical to the cDNA sequence shown in SEQ ID NO: 2.
5. A method of producing a secreted polypeptide of interest, said method comprising the steps of:
a) cultivating an Aspergillus host cell comprising a heterologous polynucleotide encoding the secreted polypeptide of interest and comprising an inactivated rImA gene or homologue thereof under conditions conducive to the expression of the secreted polypeptide of interest, wherein said rImA gene or homologue thereof encodes an RImA polypeptide having at least 80% amino acid sequence identity with SEQ ID NO: 3; and, optionally,
b) recovering the secreted polypeptide of interest.
6. The method of claim 5 , wherein the secreted polypeptide of interest is an enzyme.
7. The method of claim 5 , wherein the rImA gene or homologue thereof comprises or consists of a genomic nucleotide sequence at least 80% identical to the genomic DNA sequence shown in SEQ ID NO: 1.
8. The method of claim 5 , wherein the rImA gene or homologue thereof comprises or consists of a genomic nucleotide sequence, the cDNA sequence of which is at least 80% identical to the cDNA sequence shown in SEQ ID NO: 2.
9. A method of producing an Aspergillus host cell having an improved yield of a secreted heterologous polypeptide of interest, said method comprising the following steps in no particular order:
a) transforming a filamentous fungal host cell with a heterologous polynucleotide encoding the secreted polypeptide of interest; and
b) inactivating an rImA gene or a homologue thereof in the filamentous fungal host cell, wherein said rImA gene or a homologue thereof encodes an RImA polypeptide having at least 80% amino acid sequence identity with SEQ ID NO: 3.
10. The method of claim 9 , wherein the secreted polypeptide of interest is an enzyme.
11. The method of claim 9 , wherein the rImA gene or homologue thereof comprises or consists of a genomic nucleotide sequence at least 80% identical to the genomic DNA sequence shown in SEQ ID NO: 1.
12. The method of claim 9 , wherein the rImA gene or homologue thereof comprises or consists of a genomic nucleotide sequence, the cDNA sequence of which is at least 80% identical to the cDNA sequence shown in SEQ ID NO: 2.
13. The host cell of claim 1 , wherein the Aspergillus cell is an Aspergillus awamori, Aspergillus foetidus, Aspergillus fumigatus, Aspergillus japonicus, Aspergillus nidulans, Aspergillus niger , or Aspergillus oryzae cell.
14. The host cell of claim 2 , wherein the enzyme is a hydrolase, isomerase, ligase, lyase, oxidoreductase, or transferase.
15. The host cell of claim 2 , wherein the enzyme is an aminopeptidase, amylase, carbohydrase, carboxypeptidase, catalase, cellobiohydrolase, cellulase, chitinase, cutinase, cyclodextrin glycosyltransferase, deoxyribonuclease, endoglucanase, esterase, alpha-galactosidase, beta-galactosidase, glucoamylase, alpha-glucosidase, beta-glucosidase, invertase, laccase, lipase, mannosidase, mutanase, oxidase, pectinolytic enzyme, peroxidase, phytase, polyphenoloxidase, proteolytic enzyme, ribonuclease, transglutaminase, xylanase, or beta-xylosidase.
16. The host cell of claim 1 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 85% identical to the amino acid sequence shown in SEQ ID NO: 3.
17. The host cell of claim 1 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 90% identical to the amino acid sequence shown in SEQ ID NO: 3.
18. The host cell of claim 1 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 95% identical to the amino acid sequence shown in SEQ ID NO: 3.
19. The method of claim 5 , wherein the Aspergillus cell is an Aspergillus awamori, Aspergillus foetidus, Aspergillus fumigatus, Aspergillus japonicus, Aspergillus nidulans, Aspergillus niger , or an Aspergillus oryzae cell.
20. The method of claim 6 , wherein the enzyme is a hydrolase, isomerase, ligase, lyase, oxidoreductase, or transferase.
21. The method of claim 6 , wherein the enzyme is an aminopeptidase, amylase, carbohydrase, carboxypeptidase, catalase, cellobiohydrolase, cellulase, chitinase, cutinase, cyclodextrin glycosyltransferase, deoxyribonuclease, endoglucanase, esterase, alpha-galactosidase, beta-galactosidase, glucoamylase, alpha-glucosidase, beta-glucosidase, invertase, laccase, lipase, mannosidase, mutanase, oxidase, pectinolytic enzyme, peroxidase, phytase, polyphenoloxidase, proteolytic enzyme, ribonuclease, transglutaminase, xylanase, or beta-xylosidase.
22. The method of claim 5 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 85% identical to the amino acid sequence shown in SEQ ID NO: 3.
23. The method of claim 5 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 90% identical to the amino acid sequence shown in SEQ ID NO: 3.
24. The method of claim 5 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 95% identical to the amino acid sequence shown in SEQ ID NO: 3.
25. The method of claim 10 , wherein the enzyme is a hydrolase, isomerase, ligase, lyase, oxidoreductase, or transferase.
26. The method of claim 10 , wherein the enzyme is an aminopeptidase, amylase, carbohydrase, carboxypeptidase, catalase, cellobiohydrolase, cellulase, chitinase, cutinase, cyclodextrin glycosyltransferase, deoxyribonuclease, endoglucanase, esterase, alpha-galactosidase, beta-galactosidase, glucoamylase, alpha-glucosidase, beta-glucosidase, invertase, laccase, lipase, mannosidase, mutanase, oxidase, pectinolytic enzyme, peroxidase, phytase, polyphenoloxidase, proteolytic enzyme, ribonuclease, transglutaminase, xylanase, or beta-xylosidase.
27. The method of claim 9 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 85% identical to the amino acid sequence shown in SEQ ID NO: 3.
28. The method of claim 9 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 90% identical to the amino acid sequence shown in SEQ ID NO: 3.
29. The method of claim 9 , wherein the RImA polypeptide comprises or consists of an amino acid sequence at least 95% identical to the amino acid sequence shown in SEQ ID NO: 3.
30. The host cell of claim 9 , wherein the Aspergillus cell is an Aspergillus awamori, Aspergillus foetidus, Aspergillus fumigatus, Aspergillus japonicus, Aspergillus nidulans, Aspergillus niger , or Aspergillus oryzae cell.