Quantum mechanical/X-ray crystallography diagnostic for proteins
An analytic method for improving the efficiency in identifying protein molecular effect information using low resolution x-ray crystallography, by selecting and imaging a protein sample with low resolution x-ray crystallography and assaying the data thus generated as to local ligand strain energy value, followed by calculating a real-space difference density Z for each element and compiling ZDD data therefrom, followed by determining the true protomer/tautomer state of the protein sample by calculating Score i according to the following equation so that the highest Score i signifies the molecuar effect information: Score i ={((ZDD i −μ ZDD )/σ ZDD )+((SE i −μ SE )/σ SE )}.
1. An analytic method more efficiently to identify conformational, protonation, or solvent effect information from a real world protein of interest by using low resolution x-ray crystallography, comprising the steps of: a) selecting an aliquot of a real world protein sample as a protein to be diagnosed; b) imaging said protein by low resolution x-ray crystallography and collecting a quantity of crystallography data generated thereby; c) assaying x-ray density within said crystallography data and creating from said crystallography data thus assayed a population set containing a plurality of set elements consisting of all or reasonably all possible protomer/tautomer states of said real world protein; d) determining a local ligand strain energy value SE for each of said elements; e) determining ZDD for each of said elements by calculating a real-space difference density Z for each element and compiling ZDD data therefrom; and f) selecting a single element from among said elements that represents the true protomer/tautomer state of at least one moiety of said protein by calculating Score i according to the following equation,
Score i ={((ZDD i −μ ZDD )/σ ZDD )+((SE i −μ SE )/σ SE )}
wherein the highest Score, obtained for said population corresponds to the best tautomeric form “i” that fits both SE and ZDD criteria, so that Score, when output to a user identifies the element from said population that most closely corresponds with said real world protein thus diagnosed with increased time efficiency using said low resolution x-ray crystallography compared to the same method using atomic resolution x-ray crystallography.
2. An analytic method to identify conformational, protonation, or solvent effect information from a real world protein of interest by using low resolution x-ray crystallography having a maximum resolution of 1.1 angstrom, comprising the steps of: a) selecting an aliquot of a real world protein sample as a protein to be diagnosed; b) imaging said protein by x-ray crystallography having a maximum resolution of 1.1 angstrom and collecting a quantity of crystallography data generated thereby; c) assaying x-ray density within said crystallography data and creating from said crystallography data thus assayed a population set containing a plurality of set elements consisting of all or reasonably all possible protomer/tautomer states of said real world protein; d) determining a local ligand strain energy value SE for each of said elements; e) determining ZDD for each of said elements by calculating a real-space difference density Z for each element and compiling ZDD data therefrom; and f) selecting a single element from among said elements that represents the true protomer/tautomer state of at least one moiety of said protein by calculating Score i according to the following equation,
Score i ={((ZDD i −μ ZDD )/σ ZDD )+((SE i −μ SE )/σ SE )}
wherein the highest Score, obtained for said population corresponds to the best tautomeric form “i” that fits both SE and ZDD criteria, so that Score, when output to a user identifies—with increased time efficiency using said low resolution x-ray crystallography compared to the same method using atomic resolution x-ray crystallography—an element from said population that most closely corresponds with said real world protein.