IP Library › Granted Patent US 10,669,234
Granted Patent B2
US 10,669,234 · App. 15/738,900 · Granted Jun 2, 2020

Cyanopyrrolidines as dub inhibitors for the treatment of cancer

Inventors: Mark Kemp (Cambridge, GB); Martin Stockley (Cambridge, GB); Alison Jones (Cambridge, GB)
Assignee: MISSION THERAPEUTICS LIMITED
C07D207/16A61P25/28A61P35/00C07D209/04C07D401/06C07D401/14C07D403/06C07D403/14C07D413/06C07D413/14C07D417/12C07D417/14C07D471/04C07B2200/07
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 10,669,234
App. No.
15/738,900
Granted
Jun 2, 2020
Kind
B2
Abstract

The present invention relates to novel compounds and method for the manufacture of inhibitors of deubiquitylating enzymes (DUBs). In particular, the invention relates to the inhibition of ubiquitin C-terminal hydrolase L1 (UCHL1) and ubiquitin C-terminal hydrolase 30 or ubiquitin specific peptidase 30 (USP30). The invention further relates to the use of DUB inhibitors in the treatment of cancer and conditions involving mitochondrial dysfunction. Compounds of the invention include compounds having the formula (I) or a pharmaceutically acceptable salt thereof, wherein R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 and R 9 are as defined herein.

Claims (125)

1. A compound of formula (I):

a tautomer thereof, or a pharmaceutically acceptable salt of said compound or tautomer, wherein:

R 1 , R 2 and R 7 each independently represent a hydrogen atom or C 1 -C 6 alkyl;

R 3 , R 4 , R 5 and R 6 each independently represent a hydrogen atom, a halogen atom, cyano, C 1 -C 6 alkyl, C 1 -C 6 alkoxy, a 3 to 10 membered cycloalkyl or heterocyclyl, or a 5 to 10 membered heteroaryl or aryl;

R 9 forms a 5 to 10-membered monocyclic or bicyclic heterocyclyl or heteroaryl ring with R 8 ;

wherein the ring formed between R 8 and R 9 is optionally substituted with one or more R 10 substituents;

each R 10 is independently selected from a halogen atom, oxo, cyano, —OR 11a , —SR 11a , —NO 2 , —NR 11a R 12a , —CONR 11a R 12a , —NR 11a COR 12a , —NR 11a CONR 12a R 13a , —COR 11a , —C(O)OR 11a , —SO 2 R 11a , —SO 2 NR 11a R 12a , —NR 11a SO 2 R 12a , —NR 11a SO 2 NR 12a R 13a , —NR 11a C(O)OR 12a , —C 1 -C 6 alkyl, —C 1 -C 6 alkoxy, and —C 2 -C 6 alkenyl;

R 11a , R 12a and R 13a each independently represent a hydrogen atom or C 1 -C 6 alkyl;

wherein the ring formed between R 8 and R 9 is also optionally substituted with one, two, or more, R 14 substituents, which are each attached to the ring through Q;

Q is selected from a covalent bond, an oxygen atom, a sulphur atom, —NR 11 —, —CONR 11 —, —NR 11 CO—, —NR 11 CONR 12 —, —CO—, —C(O)O—, —SO—, —SO 2 —, —SO 2 NR 11 —, —NR 11 SO 2 —, —NR 11 SO 2 NR 12 —, —NR 11 C(O)O—, —NR 11 C(O)OR 13 —, —C 1 -C 6 alkylene, —C 1 -C 6 alkyleneoxy and —C 2 -C 6 alkenylene;

R 11 and R 12 each independently represent a hydrogen atom or C 1 -C 6 alkyl;

R 13 represents a C 1 -C 6 alkylene group;

R 14 represents a 3 to 10-membered monocyclic or bicyclic cycloalkyl or heterocyclyl or a 5 to 10-membered monocyclic or bicyclic heteroaryl or aryl;

and each occurrence of R 14 and Q is the same or different;

wherein R 14 is optionally substituted with one or more substituents each independently selected from a halogen atom, oxo, cyano, —OR 15 , —SR 15 , —NO 2 , —NR 15 R 16 , —CONR 15 R 16 , —NR 15 COR 16 , —NR 15 CONR 16 R 17 , —COR 15 , —C(O)OR 15 , —SO 2 R 15 , —SO 2 NR 15 R 16 , —NR 15 SO 2 R 16 , —NR 15 SO 2 NR 16 R 17 , —NR 15 C(O)OR 16 , —C 1 -C 6 alkyl, —C 1 -C 6 alkoxy, —C 1 -C 6 alkylene, —C 1 -C 6 alkyleneoxy, —C 2 -C 6 alkenyl, —C 2 -C 6 alkenylene, methoxymethyl, methoxyethoxy, 3 to 10-membered cycloalkyl or heterocyclyl, and 5 to 10-membered heteroaryl or aryl, wherein the —C 1 -C 6 alkylene, —C 1 -C 6 alkyleneoxy or —C 2 -C 6 alkenylene group is attached to a 3 to 10-membered cycloalkyl or heterocyclyl or 5 to 10-membered heteroaryl or aryl;

R 15 , R 16 and R 17 each independently represent a hydrogen atom, C 1 -C 6 alkyl, a 3 to 10-membered cycloalkyl or heterocyclyl or 5 to 10-membered heteroaryl or aryl;

each C 1 -C 6 alkyl, C 1 -C 6 alkoxy, C 2 -C 6 alkenyl, C 1 -C 6 alkylene, C 1 -C 6 alkyleneoxy and C 2 -C 6 alkenylene, is optionally substituted with one or more substituents, which may be the same or different, selected from halogen, hydroxyl, thiol, cyano, amino, nitro and SF 5 ; and

each cycloalkyl, aryl, heterocyclyl and heteroaryl ring of R 3 , R 4 , R 5 and R 6 is optionally substituted with one or more substituents, which may be the same or different, selected from halogen, hydroxyl, thiol, cyano, amino, nitro, SF 5 , C 1 -C 6 alkyl and C 1 -C 6 alkoxy, wherein the alkyl and alkoxy groups are optionally substituted with one or more halogen.

2. The compound according to claim 1 , wherein R 1 , R 2 , R 5 , R 6 and R 7 are each hydrogen.

3. The compound according to claim 1 , wherein R 3 and R 4 independently represent a hydrogen atom, a halogen atom, optionally substituted C 1 -C 3 alkyl, optionally substituted C 1 -C 3 alkoxy or an optionally substituted 6-membered aryl.

4. The compound according to claim 1 , wherein R 10 is selected from a halogen atom, cyano, optionally substituted C 1 -C 6 alkyl, optionally substituted C 1 -C 6 alkoxy, —NR 11a R 12a , and —CONR 11a R 12a .

5. The compound according to claim 1 , wherein the optionally substituted ring formed by R 8 and R 9 is selected from isoindolinyl, indolinyl, benzomorpholinyl, pyrrolopyridinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl and tetrahydropyrrolopyrazolyl.

6. The compound according to claim 1 , wherein R 14 represents an optionally substituted 5 or 6-membered heteroaryl, aryl, heterocyclyl or an optionally substituted 3 to 5-membered cycloalkyl.

7. The compound according to claim 1 , wherein the optionally substituted heteroaryl, aryl, heterocyclyl, or cycloalkyl ring of R 14 is selected from phenyl, isoxazolyl, pyridinyl, pyrazolyl, cyclopropyl, tetrahydrofuran, pyrimidinyl, pyrrolopyridinyl, pyrazinyl, imidazopyridinyl, benzodioxolyl, triazolyl, imidazolyl, indazolyl, pyrrolopyrazinyl, pyridazinyl, pyrazolopyridinyl, and quinolinyl.

8. The compound according to claim 1 , wherein Q is selected from a covalent bond, an oxygen atom, optionally substituted C 1 -C 6 alkylene, and optionally substituted C 1 -C 6 alkyleneoxy.

9. The compound according to claim 1 , wherein R 14 is substituted with one or more substituents selected from fluorine, chlorine, cyano, nitro, methyl, ethyl, cyclopropyl, CF 3 , methoxy, ethoxy, methoxymethyl, methoxyethoxy, propoxy, OCF 3 , C(O)NHMe, NHC(O)Me, NMeC(O)Me, NMeS(O) 2 Me, S(O) 2 Me, NH 2 , NHMe and N(Me) 2 .

10. The compound according to claim 1 , having the stereochemistry of formula (II):

a tautomer thereof, or a pharmaceutically acceptable salt of said compound or tautomer.

11. A compound, wherein said compound is:

(S)-2-(4-ethoxyindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-isopropoxyindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-phenoxyindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-phenoxyindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-phenylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(3,5-dimethylisoxazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(3-methoxyphenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(4-methoxyphenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(2,6-dimethylphenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(2-methoxyphenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

3-(1-(cyano-L-prolyl)indolin-4-yl)-N-methylbenzamide;

(S)-2-(4-cyclopropylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(2S,4S)-4-methoxy-2-(4-phenylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(2S,4R)-4-methoxy-2-(4-phenylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(5-methylisoxazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-phenylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(5-(trifluoromethyl)-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(5-(trifluoromethyl)-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(5-methyl-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(4-cyanophenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(3-cyanophenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(2-cyanophenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(3,5-dimethyl-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(1H-pyrazol-3-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(1H-pyrrolo[2,3-b]pyridin-3-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-4,4-difluoro-2-(4-(5-(trifluoromethyl)-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(2S,4S)-4-fluoro-2-(4-(5-(trifluoromethyl)-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-4,4-difluoro-2-(4-(5-methyl-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(1H-pyrazol-5-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-phenylisoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-phenylisoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(pyridin-2-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(pyridazin-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(pyrimidin-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(3-cyclopropyl-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(2-aminopyrimidin-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(pyridin-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(5-methylisoxazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(3,5-dimethylisoxazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(pyridin-3-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(6-phenylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(8-phenyl-3,4-dihydro-2H-benzo[b][1,4]oxazine-4-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-phenyl-1,2,3,4-tetrahydroquinoline-1-carbonyl)pyrrolidine-1-carbonitrile;

ethyl 4-(1-(cyano-L-prolyl)indolin-4-yl)-1-(4-methoxybenzyl)-1H-pyrazole-5-carboxylate;

(S)-2-(4-(3-methylisoxazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(1H-imidazol-1-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

4-(1-(cyano-L-prolyl)indolin-4-yl)-1H-pyrazole-5-carbonitrile;

(S)-2-(5-phenyl-1,2,3,4-tetrahydroisoquinoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(2-aminopyridin-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

1-(cyano-L-prolyl)-4-phenylindoline-6-carboxamide;

1-(cyano-L-prolyl)-N-ethyl-4-phenylindoline-6-carboxamide;

1-(cyano-L-prolyl)-4-(3-ethylphenyl)-N-methylindoline-6-carboxamide;

1-(cyano-L-prolyl)-N-methyl-4-(quinolin-6-yl)indoline-6-carboxamide;

1-(cyano-L-prolyl)-N-methyl-4-(1H-pyrrolo[2,3-b]pyridin-3-yl)indoline-6-carboxamide;

(S)-2-(6-(1H-imidazol-2-yl)-4-phenylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-phenyl-6-(4H-1,2,4-triazol-3-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(6-(5-methyl-4H-1,2,4-triazol-3-yl)-4-phenylindoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(4-cyanophenyl)-6-(5-methyl-4H-1,2,4-triazol-3-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(3-cyanophenyl)-6-(5-methyl-4H-1,2,4-triazol-3-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(2S,4S)-4-fluoro-2-(4-(5-methyl-1H-pyrazol-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

N-(4-(1-(cyano-L-prolyl)indolin-4-yl)pyridin-2-yl)acetamide;

(S)-2-(4-(5-(trifluoromethyl)-1H-pyrazol-4-yl)-2,3-dihydro-1H-pyrrolo[3,2-c]pyridine-1-carbonyl)pyrrolidine-1-carbonitrile;

1-(cyano-L-prolyl)-N-methyl-4-(4-(trifluoromethyl)phenyl)indoline-6-carboxamide;

1-(cyano-L-prolyl)-4-(3-cyanophenyl)-N-methylindoline-6-carboxamide;

1-(cyano-L-prolyl)-4-(4-cyanophenyl)-N-methylindoline-6-carboxamide;

4-(4-chlorophenyl)-1-(cyano-L-prolyl)-N-methylindoline-6-carboxamide;

1-(cyano-L-prolyl)-N-methyl-4-(m-tolyl)indoline-6-carboxamide;

4-(2-chlorophenyl)-1-(cyano-L-prolyl)-N-methylindoline-6-carboxamide;

1-(cyano-L-prolyl)-4-(3,4-dichlorophenyl)-N-methylindoline-6-carboxamide;

4-(benzo[d][1,3]dioxol-5-yl)-1-(cyano-L-prolyl)-N-methylindoline-6-carboxamide;

(S)-2-(1-phenyl-1,4,5,6-tetrahydropyrrolo[3,2-c]pyrazole-4-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(3-chlorophenyl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(4-cyanophenyl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(3-cyanophenyl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(3-(trifluoromethyl)-1H-pyrazol-4-yl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

4-(1-(cyano-L-prolyl)indolin-4-yl)nicotinonitrile;

(S)-2-(4-(1H-pyrrolo[2,3-b]pyridin-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(6-aminopyridin-2-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(6-aminopyrazin-2-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(2-(methylamino)pyrimidin-4-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(2-aminopyrimidin-5-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(1H-pyrazolo[3,4-b]pyridin-3-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(4-(5H-pyrrolo[2,3-b]pyrazin-7-yl)indoline-1-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(3-(trifluoromethoxy)phenyl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(3-methyl-1H-indazol-6-yl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(1-methyl-1H-indazol-5-yl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(4-(methylsulfonyl)phenyl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(2-cyanophenyl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

(S)-2-(5-(3-nitrophenyl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile; and

(S)-2-(5-(3-cyano-2-fluorophenyl)isoindoline-2-carbonyl)pyrrolidine-1-carbonitrile;

a tautomer thereof, or a pharmaceutically acceptable salt of said compound or tautomer.

12. A pharmaceutical composition, comprising the compound according to claim 1 , a tautomer thereof, or a pharmaceutically acceptable salt of said compound or tautomer, and one or more pharmaceutically acceptable excipients.

13. A method of treating a disease selected from breast cancer, colon cancer, lung or kidney tumors, osteosarcoma, multiple myeloma and Parkinson's disease, comprising the step of administering a therapeutically effective amount of the compound according to claim 1 , a tautomer thereof, or a pharmaceutically acceptable salt of said compound or tautomer, to a patient in need thereof, wherein the patient is suffering from the disease.

14. A pharmaceutical composition, comprising the compound according to claim 11 , a tautomer thereof, or a pharmaceutically acceptable salt of said compound or tautomer, and one or more pharmaceutically acceptable excipients.

15. A method of treating a disease selected from breast cancer, colon cancer, lung or kidney tumors, osteosarcoma, multiple myeloma and Parkinson's disease, comprising the step of administering a therapeutically effective amount of the compound according to claim 11 , a tautomer thereof, or a pharmaceutically acceptable salt of said compound or tautomer, to a patient in need thereof, wherein the patient is suffering from the disease.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 28, 2018
From: KEMP, MARK; STOCKLEY, MARTIN; JONES, ALISON
To: MISSION THERAPEUTICS LIMITED
Reel/Frame 045376/0310 →
Priority Claims (2)
GB 1512270.8 · Jul 14, 2015 · national
GB 1604642.7 · Mar 18, 2016 · national
Continuity (1)
Related Publication 20180194724A1 · Jul 12, 2018