Compositions and methods for inhibiting HMGB1 expression
This disclosure relates to oligonucleotides, compositions and methods useful for reducing HMGB1 expression, particularly in hepatocytes. Disclosed oligonucleotides for the reduction of HMGB1 expression may be double-stranded or single-stranded, and may be modified for improved characteristics such as stronger resistance to nucleases and lower immunogenicity. Disclosed oligonucleotides for the reduction of HMGB1 expression may also be designed to include targeting ligands to target a particular cell or organ, such as the hepatocytes of the liver, and may be used to treat liver fibrosis and related conditions.
1. An oligonucleotide for reducing expression of HMGB1, the oligonucleotide comprising an antisense strand of 15 to 30 nucleotides in length, wherein the antisense strand has a region of complementarity to HMGB1 that is complementary to at least 15 contiguous nucleotides of a sequence as set forth in SEQ ID NOs: 374-381, 193-272, and 363-365, further comprising a sense strand of 15 to 50 nucleotides in length, wherein the sense strand forms a duplex region with the antisense strand, wherein the sense strand comprises a sequence as set forth in any one of SEQ ID NOs: 193-272 or 363-365.
2. The oligonucleotide of claim 1 , wherein the sense strand comprises a sequence as set forth in SEQ ID NOs: 204, 211, 364, or 365.
3. The oligonucleotide of claim 1 , wherein the antisense strand comprises a sequence as set forth in any one of SEQ ID NOs: 273-362 or 366-370.
4. The oligonucleotide of claim 2 , wherein the antisense strand comprises a sequence as set forth in any one of SEQ ID NOs: 274, 276, 286, 292, 296, 367, 369 or 370.
5. An oligonucleotide for reducing expression of HMGB1, the oligonucleotide comprising an antisense strand of 15 to 30 nucleotides in length, wherein the antisense strand has a region of complementarity to HMGB1 that is complementary to at least 15 contiguous nucleotides of a sequence as set forth in SEQ ID NOs: 374-381, 193-272, and 363-365, further comprising a sense strand of 15 to 50 nucleotides in length, wherein the sense strand forms a duplex region with the antisense strand, wherein the sense strand comprises at its 3′-end a stem-loop set forth as: S 1 -L-S 2 , wherein S 1 is complementary to S 2 , and wherein L forms a loop between S 1 and S 2 of 3 to 5 nucleotides in length.
6. An oligonucleotide for reducing expression of HMGB1, the oligonucleotide comprising an antisense strand of 15 to 30 nucleotides in length, wherein the antisense strand has a region of complementarity to HMGB1 that is complementary to at least 15 contiguous nucleotides of a sequence as set forth in SEQ ID NOs: 374-381, 193-272, and 363-365, wherein:
the oligonucleotide comprises at least one modified nucleotide, or at least one modified internucleotide linkage, or at least one targeting ligand; and/or
the 4′-carbon of the sugar of the 5′-nucleotide of the antisense strand comprises a phosphate analog.
7. The oligonucleotide of claim 6 , wherein the oligonucleotide comprises at least one modified internucleotide linkage.
8. The oligonucleotide of claim 7 , wherein the at least one modified internucleotide linkage is a phosphorothioate linkage.
9. The oligonucleotide of claim 6 , wherein the 4′-carbon of the sugar of the 5′-nucleotide of the antisense strand comprises a phosphate analog.
10. The oligonucleotide of claim 6 , wherein the oligonucleotide comprises at least one targeting ligand, wherein each targeting ligand comprises a N-acetylgalactosamine (GalNAc) moiety.
11. A composition comprising an oligonucleotide of claim 1 and an excipient.
12. A method of delivering an oligonucleotide to a subject, the method comprising administering the composition of claim 11 to the subject.
13. The oligonucleotide of claim 6 , wherein the oligonucleotide comprises at least one modified nucleotide.
14. The oligonucleotide of claim 13 , wherein the at least one modified nucleotide comprises a 2′-modification selected from: 2′-aminoethyl, 2′-fluoro, 2′-O-methyl, 2′-O-methoxyethyl, and 2′-deoxy-2′-fluoro-β-d-arabinonucleic acid.
15. The oligonucleotide of claim 6 , further comprising a sense strand of 15 to 50 nucleotides in length, wherein the sense strand forms a duplex region with the antisense strand.
16. The oligonucleotide of claim 15 , wherein the sense strand comprises a sequence as set forth in any one of SEQ ID NOs: 193-272 or 363-365.
17. A composition comprising an oligonucleotide of claim 5 and an excipient.
18. A composition comprising an oligonucleotide of claim 6 and an excipient.
19. A method of delivering an oligonucleotide to a subject, the method comprising administering the composition of claim 17 to the subject.
20. A method of delivering an oligonucleotide to a subject, the method comprising administering the composition of claim 18 to the subject.