G-protein coupled receptor (GPCR)-based biosensors and uses thereof
Provided herein are GPCR-based chemical biosensors that can have a sensing unit, a processing unit, and a response unit that can be used to detect a chemical of interest. Also provided herein are methods of making and using the GPCR-based chemical biosensors.
1. An engineered yeast cell comprising:
a sensing unit, the sensing unit comprising:
an olfactory G-protein coupled receptor (GPCR), wherein the olfactory GPCR is an OR1G1 or an OR1G1 mutant, wherein OR1G1 comprises the amino acid sequence encoded by the nucleic acids sequence SEQ ID NO:59, and wherein the OR1G1 mutant comprises the OR1G1 amino acid sequence with up to 7 amino acid substitutions thereof;
a processing unit, the processing unit comprising:
a signal transduction pathway, wherein the signal transduction pathway comprises a synthetic transcription factor selected from STF1, STF2, STF3, and combinations thereof;
a synthetic response unit, the synthetic response unit comprising:
a recombinant signal molecule gene, wherein the recombinant signal molecule gene is operatively coupled to a synthetic promoter that is responsive to the synthetic processing unit, wherein the synthetic promoter is selected from the group consisting of: pGAL4(5×), pLExA(4×), pCRE, and combinations thereof,
wherein the sensing unit is in biologic communication with the processing unit and the processing unit is in biologic communication with the response unit.
2. The engineered yeast cell of claim 1 , wherein the olfactory GPCR is an OR1G1 mutant and wherein the OR1G1 mutant comprises the amino acid sequence encoded by a nucleic acid sequence selected from the group consisting of: SEQ ID NO: 60, 64, 67, 68, 69, 70, and 73.
3. The engineered yeast cell of claim 1 , wherein the olfactory GPCR binds a fatty acid.
4. The engineered yeast cell of claim 1 , further comprising an amplification unit, wherein the amplification unit is biologically coupled to the synthetic response unit.
5. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor has a sequence about 90%-100% identical to SEQ ID NO: 51-53.
6. The engineered yeast cell of claim 5 , wherein the synthetic promoter has a sequence 90% to 100% identical to SEQ ID NO: 54-56.
7. The engineered yeast cell of claim 1 , wherein the recombinant signal molecule gene encodes a fluorescent protein.
8. The engineered yeast cell of claim 1 , wherein the engineered yeast cell has at least a ste12 deletion.
9. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor is STF1 and the synthetic promoter is pGAL4(5×).
10. The engineered yeast cell of claim 9 , wherein STF1 has a sequence that is about 90%-100% identical to SEQ ID NO: 51 and pGAL4(5×) has a sequence that is about 90%-100% identical to SEQ ID NO: 54.
11. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor is STF2 and the promoter is pLexA(4×).
12. The engineered yeast cell of claim 11 , wherein STF2 has a sequence that is about 90%-100% identical to SEQ ID NO: 52 and pLexA(4×) has a sequence that is about 90%-100% identical to SEQ ID NO: 55.
13. The engineered yeast cell of claim 1 , wherein the synthetic transcription factor is STF3 and the synthetic promoter is pCRE.
14. The engineered yeast cell of claim 13 , wherein STF3 has a sequence that is about 90%-100% identical to SEQ ID NO: 53 and pCRE has a sequence that is about 90%-100% identical to SEQ ID NO: 56.
15. A method comprising:
contacting an engineered yeast cell with a sample, wherein the engineered yeast cell comprises
a sensing unit, the sensing unit comprising:
an olfactory G-protein coupled receptor (GPCR), wherein the olfactory GPCR is an OR1G1 or an OR1G1 mutant wherein OR1G1 comprises an amino acid sequence encoded by the nucleic acids sequence SEQ ID NO:59, and wherein the OR1G1 mutant comprises the OR1G1 amino acid sequence with up to 7 amino acid substitutions thereof;
a processing unit, the processing unit comprising:
a signal transduction pathway, wherein the signal transduction pathway comprises a synthetic transcription factor selected from STF1, STF2, STF3, and combinations thereof;
a synthetic response unit, the synthetic response unit comprising:
a recombinant signal molecule gene, wherein the recombinant signal molecule gene is operatively coupled to a synthetic promoter that is responsive to the synthetic processing unit, wherein the synthetic promoter is selected from the group consisting of: pGAL4(5×), pLExA(4×), pCRE, and combinations thereof,
wherein the sensing unit is in biologic communication with the processing unit and the processing unit is in biologic communication with the response unit; and
detecting a signal generated by the response unit.
16. The method of claim 15 , wherein the step of contacting the engineered yeast cell with a sample further comprises incubating the engineered yeast cell with a producer cell.
17. The method of claim 15 , wherein the synthetic transcription factor is STF1 and the synthetic promoter is pGAL4(5×).
18. The method of claim 15 , wherein the synthetic transcription factor is STF2 and the synthetic promoter is pLexA(4×).
19. The method of claim 15 , wherein the synthetic transcription factor is STF3 and the synthetic promoter is pCRE.