Detection of a target nucleic acid sequence using two different detection temperatures
The present invention relates to detection of a target nucleic acid sequence in a sample using two different detection temperatures. The present invention using difference between signals detected at two detection temperatures enables to decrease well-to-well variation or sample-to-sample variation generated in real-time PCR processes in more convenient and effective manner.
1. A method for reducing signal variations in detecting a target nucleic acid sequence, in a sample using two different detection temperatures, comprising:
(a) incubating a reaction mixture containing the sample and a signal-generating means for detection of the target nucleic acid sequence in a reaction vessel and detecting signals generated at a high detection temperature and at a low detection temperature; wherein the signal-generating means is a signal-generating means to generate a signal by formation of a duplex containing a detection oligonucleotide in a dependent manner on cleavage of a mediation oligonucleotide specifically hybridized with the target nucleic acid sequence or a signal-generating means to generate a signal in a dependent manner on cleavage of a detection oligonucleotide; and
(b) determining the presence of the target nucleic acid sequence by a processed signal obtained from a difference between the signal detected at the high detection temperature and the signal detected at the low detection temperature.
2. The method according to claim 1 , wherein the signals detected at the high and low detection temperatures are signals influenced by conditions during the incubation and/or the detection, and the processed signal obtained from a difference between the signals decreases the influences of the conditions.
3. The method according to claim 1 , wherein the reaction mixture comprises a plurality of reaction mixtures that are prepared similarly using the sample.
4. The method according to claim 1 , wherein the step (a) is performed in a signal amplification process concomitantly with a nucleic acid amplification.
5. The method according to claim 1 , wherein the step (a) is performed in a signal amplification process without a nucleic acid amplification.
6. The method according to claim 1 , wherein the signal-generating means is a signal-generating means to generate a signal in a dependent manner on cleavage of a detection oligonucleotide.
7. The method according to claim 1 , wherein when the signal-generating means generates a signal in a dependent manner on cleavage of a detection oligonucleotide, and wherein the detection temperature is arbitrarily selected.
8. The method according to claim 1 , wherein the processed signal is obtained by mathematically processing the signal detected at the high detection temperature and the signal detected at the low detection temperature for indicating the difference between the signals.
9. The method according to claim 1 , wherein the signals at a high detection temperature and at a low detection temperature are detected on a solid phase.
10. The method according to claim 1 , wherein the target nucleic acid sequence comprises a nucleotide variation.
11. A computer readable storage medium containing instructions to configure a processor to perform a method for reducing signal variations in determining the presence of a target nucleic acid sequence in a sample using two different detection temperatures, the method comprising:
(a) receiving both a signal detected at a high detection temperature and a signal detected at a low detection temperature; wherein the signals are provided from a signal-generating means to generate a signal by formation of a duplex containing a detection oligonucleotide in a dependent manner on cleavage of a mediation oligonucleotide specifically hybridized with the target nucleic acid sequence or a signal-generating means to generate a signal in a dependent manner on cleavage of the detection oligonucleotide; and
(b) determining the presence of the target nucleic acid sequence by a processed signal obtained from a difference between the signal detected at the high detection temperature and the signal detected at the low detection temperature.
12. A device for reducing signal variations in detecting a target nucleic acid sequence in a sample using two different detection temperatures, comprising:
(a) a computer processor and
(b) the computer readable storage medium of claim 11 coupled to the computer processor.