Bispecific T cell activating antigen binding molecules
The present invention generally relates to novel bispecific antigen binding molecules for T cell activation and re-direction to specific target cells. In addition, the present invention relates to polynucleotides encoding such bispecific antigen binding molecules, and vectors and host cells comprising such polynucleotides. The invention further relates to methods for producing the bispecific antigen binding molecules of the invention, and to methods of using these bispecific antigen binding molecules in the treatment of disease.
1. A T cell activating bispecific antigen-binding molecule comprising:
(a) a first Fab molecule which specifically binds to a first antigen;
(b) a second Fab molecule which specifically binds to a second antigen, and wherein the variable domains VL and VH of the Fab light chain and the Fab heavy chain are replaced by each other;
wherein the first antigen is CD3 and the second antigen is CEA, or the first antigen is CEA and the second antigen is CD3;
wherein the Fab molecule which specifically binds to CD3 comprises a heavy chain variable region comprising the heavy chain complementarity determining region (HCDR) 1 of SEQ ID NO: 4, the HCDR 2 of SEQ ID NO: 5, and the HCDR 3 of SEQ ID NO: 6, and a light chain variable region comprising the light chain complementarity determining region (LCDR) 1 of SEQ ID NO: 8, the LCDR 2 of SEQ ID NO: 9, and the LCDR 3 of SEQ ID NO: 10; and
wherein the Fab molecule which specifically binds to CEA comprises a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 22 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 23.
2. The T cell activating bispecific antigen-binding molecule of claim 1 , wherein the CD3 is CD3 epsilon.
3. The T cell activating bispecific antigen-binding molecule of claim 1 , wherein the Fab molecule which specifically binds to CD3 comprises a heavy chain variable region comprising an amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 3 and a light chain variable region comprising an amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 7.
4. The T cell activating bispecific antigen-binding molecule of claim 1 , further comprising a third Fab molecule which specifically binds to the first antigen.
5. The T cell activating bispecific antigen-binding molecule of claim 4 , wherein the third Fab molecule is identical to the first Fab molecule.
6. The T cell activating bispecific antigen-binding molecule of claim 4 , wherein the first Fab molecule and the third Fab molecule specifically bind to CEA, and the second Fab molecule specifically binds to CD3.
7. The T cell activating bispecific antigen-binding molecule of claim 1 , additionally comprising an Fc domain comprising a first subunit and a second subunit capable of stable association.
8. The T cell activating bispecific antigen-binding molecule of claim 1 , wherein the first Fab molecule is fused at the C-terminus of the Fab heavy chain to the N-terminus of the Fab heavy chain of the second Fab molecule.
9. The T cell activating bispecific antigen-binding molecule of claim 7 , wherein the second Fab molecule is fused at the C-terminus of the Fab heavy chain to the N-terminus of the first subunit or the second subunit of the Fc domain.
10. The T cell activating bispecific antigen-binding molecule of claim 7 , further comprising a third Fab molecule which specifically binds to the first antigen, wherein the third Fab molecule is fused at the C-terminus of the Fab heavy chain to the N-terminus of the first subunit or the second subunit of the Fc domain.
11. The T cell activating bispecific antigen-binding molecule of claim 7 , further comprising a third Fab molecule which specifically binds to the first antigen, wherein the second Fab molecule and the third Fab molecule are each fused at the C-terminus of the Fab heavy chain to the N-terminus of one of the subunits of the Fc domain, and the first Fab molecule is fused at the C-terminus of the Fab heavy chain to the N-terminus of the Fab heavy chain of the second Fab molecule.
12. The T cell activating bispecific antigen-binding molecule of claim 7 , wherein the Fc domain is an IgG Fc domain.
13. The T cell activating bispecific antigen-binding molecule of claim 7 , wherein the Fc domain is a human Fc domain.
14. The T cell activating bispecific antigen-binding molecule of claim 7 , wherein the Fc domain comprises a modification promoting the association of the first subunit and the second subunit of the Fc domain.
15. The T cell activating bispecific antigen-binding molecule of claim 14 , wherein in the CH3 domain of the first subunit of the Fc domain an amino acid residue is replaced with an amino acid residue having a larger side chain volume, thereby generating a protuberance within the CH3 domain of the first subunit which is positionable in a cavity within the CH3 domain of the second subunit, and in the CH3 domain of the second subunit of the Fc domain an amino acid residue is replaced with an amino acid residue having a smaller side chain volume, thereby generating a cavity within the CH3 domain of the second subunit within which the protuberance within the CH3 domain of the first subunit is positionable.
16. The T cell activating bispecific antigen-binding molecule of claim 15 , wherein in the CH3 domain of the first subunit of the Fc domain the threonine residue at position 366 is replaced with a tryptophan residue (T366W), and in the CH3 domain of the second subunit of the Fc domain the tyrosine residue at position 407 is replaced with a valine residue (Y407V) (numberings according to Kabat EU index).
17. The T cell activating bispecific antigen-binding molecule of claim 16 , wherein in the first subunit of the Fc domain additionally the serine residue at position 354 is replaced with a cysteine residue (S354C) or the glutamic acid residue at position 356 is replaced with a cysteine residue (E356C), and in the second subunit of the Fc domain additionally the tyrosine residue at position 349 is replaced by a cysteine residue (Y349C) (numberings according to Kabat EU index).
18. The T cell activating bispecific antigen-binding molecule of claim 7 , wherein the Fc domain comprises one or more amino acid substitution that reduces binding to an Fc receptor and/or effector function.
19. The T cell activating bispecific antigen-binding molecule of claim 18 , wherein said one or more amino acid substitution is at one or more position selected from the group consisting of L234, L235, and P329 (numberings according to Kabat EU index).
20. The T cell activating bispecific antigen-binding molecule of claim 7 , wherein each subunit of the Fc domain comprises the amino acid substitutions L234A, L235A, and P329G (numberings according to Kabat EU index).
21. One or more isolated polynucleotide encoding the T cell activating bispecific antigen-binding molecule of claim 1 .
22. A host cell comprising the polynucleotide(s) of claim 21 .
23. A method of producing a T cell activating bispecific antigen-binding molecule, the method comprising culturing the host cell of claim 22 under conditions suitable for the expression of the T cell activating bispecific antigen-binding molecule, wherein the T cell activating bispecific antigen-binding molecule comprises:
(a) a first Fab molecule which specifically binds to a first antigen;
(b) a second Fab molecule which specifically binds to a second antigen, and wherein the variable domains VL and VH of the Fab light chain and the Fab heavy chain are replaced by each other;
wherein the first antigen is CD3 and the second antigen is CEA, or the first antigen is CEA and the second antigen is CD3;
wherein the Fab molecule which specifically binds to CD3 comprises a heavy chain variable region comprising the HCDR 1 of SEQ ID NO: 4, the HCDR 2 of SEQ ID NO: 5, and the HCDR 3 of SEQ ID NO: 6, and a light chain variable region comprising the LCDR 1 of SEQ ID NO: 8, the LCDR 2 of SEQ ID NO: 9, and the LCDR 3 of SEQ ID NO: 10; and
wherein the Fab molecule which specifically binds to CEA comprises a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 22 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 23.
24. The T cell activating bispecific antigen-binding molecule produced by the method of claim 23 .
25. A pharmaceutical composition comprising the T cell activating bispecific antigen-binding molecule of claim 1 and a pharmaceutically acceptable carrier.
26. The T cell activating bispecific antigen-binding molecule of claim 6 , wherein the CD3 is CD3 epsilon.
27. The T cell activating bispecific antigen-binding molecule of claim 12 , wherein the IgG Fc domain is an IgG 1 Fc domain or an IgG 4 Fc domain.
28. The T cell activating bispecific antigen-binding molecule of claim 16 , wherein in the second subunit of the Fc domain the threonine residue at position 366 is replaced with a serine residue (T366S) and the leucine residue at position 368 is replaced with an alanine residue (L368A) (numberings according to Kabat EU index).
29. The T cell activating bispecific antigen-binding molecule of claim 1 , wherein the Fab molecule which specifically binds to CD3 comprises a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 3 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 7.
30. The T cell activating bispecific antigen-binding molecule of claim 1 , wherein the first Fab molecule is a conventional Fab molecule.
31. The T cell activating bispecific antigen-binding molecule of claim 4 , wherein the third Fab molecule is a conventional Fab molecule.
32. The T cell activating bispecific antigen-binding molecule of claim 1 , wherein (i) in the constant domain CL of the first Fab molecule the amino acid at position 124 is substituted independently by lysine (K), arginine (R), or histidine (H) (numbering according to Kabat), and in the constant domain CH1 of the first Fab molecule the amino acid at position 147 or the amino acid at position 213 is substituted independently by glutamic acid (E) or aspartic acid (D) (numbering according to Kabat EU index); or (ii) in the constant domain CL of the second Fab molecule the amino acid at position 124 is substituted independently by lysine (K), arginine (R), or histidine (H) (numbering according to Kabat), and in the constant domain CH1 of the second Fab molecule the amino acid at position 147 or the amino acid at position 213 is substituted independently by glutamic acid (E) or aspartic acid (D) (numbering according to Kabat EU index).
33. The T cell activating bispecific antigen-binding molecule of claim 32 , wherein in the constant domain CL of the first Fab molecule the amino acid at position 124 is substituted independently by lysine (K), arginine (R), or histidine (H) (numbering according to Kabat) and the amino acid at position 123 is substituted independently by lysine (K), arginine (R), or histidine (H) (numbering according to Kabat), and wherein in the constant domain CH1 of the first Fab molecule the amino acid at position 147 is substituted independently by glutamic acid (E) or aspartic acid (D) (numbering according to Kabat EU index) and the amino acid at position 213 is substituted independently by glutamic acid (E) or aspartic acid (D) (numbering according to Kabat EU index).
34. The T cell activating bispecific antigen-binding molecule of claim 33 , wherein in the constant domain CL of the first Fab molecule the amino acid at position 124 is substituted by lysine (K) (numbering according to Kabat) and the amino acid at position 123 is substituted by arginine (R) (numbering according to Kabat), and wherein in the constant domain CH1 of the first Fab molecule the amino acid at position 147 is substituted by glutamic acid (E) (numbering according to Kabat EU index) and the amino acid at position 213 is substituted by glutamic acid (E) (numbering according to Kabat EU index).
35. A T cell activating bispecific antigen-binding molecule, comprising:
(a) a first Fab molecule which specifically binds to a first antigen;
(b) a second Fab molecule which specifically binds to a second antigen, and wherein the variable domains VL and VH of the Fab light chain and the Fab heavy chain are replaced by each other;
(c) a third Fab molecule which specifically binds to the first antigen; and
(d) an Fc domain composed of a first and a second subunit capable of stable association;
wherein the first antigen is CEA and the second antigen is CD3;
wherein the third Fab molecule is identical to the first Fab molecule;
wherein the first Fab molecule is fused at the C-terminus of the Fab heavy chain to the N-terminus of the Fab heavy chain of the second Fab molecule, and the second Fab molecule and the third Fab molecule are each fused at the C-terminus of the Fab heavy chain to the N-terminus of one of the subunits of the Fc domain;
wherein the first Fab molecule and the third Fab molecule comprise a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 22 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 23; and
wherein the second Fab molecule comprises a heavy chain variable region comprising the HCDR 1 of SEQ ID NO: 4, the HCDR 2 of SEQ ID NO: 5, the HCDR 3 of SEQ ID NO: 6, and a light chain variable region comprising the LCDR 1 of SEQ ID NO: 8, the LCDR 2 of SEQ ID NO: 9, and the LCDR 3 of SEQ ID NO: 10.
36. The T cell activating bispecific antigen-binding molecule of claim 35 , wherein the second Fab molecule comprises a heavy chain variable region comprising an amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 3 and a light chain variable region comprising an amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 7.
37. The T cell activating bispecific antigen-binding molecule of claim 35 , wherein:
(a) the Fc domain is a human IgG 1 Fc domain;
(b) the first subunit of the Fc domain comprises amino acid substitutions S354C and T366W, and the second subunit of the Fc domain comprises amino acid substitutions Y3490, T366S, L368A, and Y407V; and
(c) each subunit of the Fc domain comprises the amino acid substitutions L234A, L235A, and P329G (numberings according to Kabat EU index).
38. A pharmaceutical composition comprising the T cell activating bispecific antigen-binding molecule of claim 35 .
39. The T cell activating bispecific antigen-binding molecule of claim 35 , wherein the second Fab molecule comprises a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 3 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 7.
40. The T cell activating bispecific antigen-binding molecule of claim 35 , wherein in the constant domain CL of the first Fab molecule and the third Fab molecule the amino acid at position 124 is substituted by lysine (K) (numbering according to Kabat) and the amino acid at position 123 is substituted by arginine (R) (numbering according to Kabat), and wherein in the constant domain CH1 of the first Fab molecule and the third Fab molecule the amino acid at position 147 is substituted by glutamic acid (E) (numbering according to Kabat EU index) and the amino acid at position 213 is substituted by glutamic acid (E) (numbering according to Kabat EU index).
41. A T cell activating bispecific antigen-binding molecule, comprising:
(a) a first Fab molecule which specifically binds to a first antigen;
(b) a second Fab molecule which specifically binds to a second antigen, and wherein the variable domains VL and VH of the Fab light chain and the Fab heavy chain are replaced by each other;
(c) a third Fab molecule which specifically binds to the first antigen; and
(d) an Fc domain composed of a first and a second subunit capable of stable association;
wherein the first antigen is CEA and the second antigen is CD3;
wherein the third Fab molecule is identical to the first Fab molecule;
wherein the first Fab molecule is fused at the C-terminus of the Fab heavy chain to the N-terminus of the Fab heavy chain of the second Fab molecule, and the second Fab molecule and the third Fab molecule are each fused at the C-terminus of the Fab heavy chain to the N-terminus of one of the subunits of the Fc domain;
wherein the first Fab molecule and the third Fab molecule comprise a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 22 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 23;
wherein the second Fab molecule comprises a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 3 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 7; and
wherein:
(a) the Fc domain is a human IgG 1 Fc domain;
(b) the first subunit of the Fc domain comprises amino acid substitutions S354C and T366W, and the second subunit of the Fc domain comprises amino acid substitutions Y3490, T366S, L368A, and Y407V; and
(c) each subunit of the Fc domain comprises the amino acid substitutions L234A, L235A, and P329G (numberings according to Kabat EU index).
42. The T cell activating bispecific antigen-binding molecule of claim 41 , comprising a polypeptide that is at least 95% identical to the amino acid sequence of SEQ ID NO: 34, a polypeptide that is at least 95% identical to the amino acid sequence of SEQ ID NO: 36, a polypeptide that is at least 95% identical to the amino acid sequence of SEQ ID NO: 37, and a polypeptide that is at least 95% identical to the amino acid sequence of SEQ ID NO: 38.
43. A pharmaceutical composition comprising the T cell activating bispecific antigen-binding molecule of claim 41 .
44. The T cell activating bispecific antigen-binding molecule of claim 41 , comprising a polypeptide comprising the amino acid sequence of SEQ ID NO: 34, a polypeptide comprising the amino acid sequence of SEQ ID NO: 36, a polypeptide comprising the amino acid sequence of SEQ ID NO: 37, and a polypeptide comprising the amino acid sequence of SEQ ID NO: 38.
45. The T cell activating bispecific antigen-binding molecule of claim 41 , wherein in the constant domain CL of the first Fab molecule and the third Fab molecule the amino acid at position 124 is substituted by lysine (K) (numbering according to Kabat) and the amino acid at position 123 is substituted by arginine (R) (numbering according to Kabat), and wherein in the constant domain CH1 of the first Fab molecule and the third Fab molecule the amino acid at position 147 is substituted by glutamic acid (E) (numbering according to Kabat EU index) and the amino acid at position 213 is substituted by glutamic acid (E) (numbering according to Kabat EU index).
46. A T cell activating bispecific antigen-binding molecule comprising:
(a) a first antigen-binding moiety and a third antigen-binding moiety, each of which specifically binds to CEA; wherein each of the first antigen-binding moiety and the third antigen-binding moiety is a conventional Fab molecule comprising:
(i) a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 22; and
(ii) a light chain variable region comprising the amino acid sequence of SEQ ID NO: 23, and wherein in the constant domain CL the amino acid at position 124 is substituted by lysine (K) (numbering according to Kabat) and the amino acid at position 123 is substituted by arginine (R) (numbering according to Kabat), and wherein in the constant domain CH1 the amino acid at position 147 is substituted by glutamic acid (E) (numbering according to Kabat EU index) and the amino acid at position 213 is substituted by glutamic acid (E) (numbering according to Kabat EU index);
(b) a second antigen-binding moiety which specifically binds to CD3; wherein the second antigen-binding moiety is a crossover Fab molecule wherein the variable domains VL and VH of the Fab light chain and the Fab heavy chain are replaced by each other, wherein the second antigen-binding moiety comprises:
(i) a heavy chain variable region comprising an amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 3, wherein the amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 3 comprises the HCDR1 of SEQ ID NO: 4, the HCDR2 of SEQ ID NO: 5, and the HCDR3 of SEQ ID NO: 6; and
(ii) a light chain variable region comprising an amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 7, wherein the amino acid sequence that is at least 95% identical to the amino acid sequence of SEQ ID NO: 7 comprises the LCDR1 of SEQ ID NO: 8, the LCDR2 of SEQ ID NO: 9, and the LCDR3 of SEQ ID NO: 10; and
(c) an Fc domain composed of a first and a second subunit capable of stable association, wherein the Fc domain is a human IgG 1 Fc domain, wherein the first subunit of the Fc domain comprises the amino acid substitutions S354C and T366W, the second subunit of the Fc domain comprises the amino acid substitutions Y3490, T366S, L368A, and Y407V, and wherein each subunit of the Fc domain comprises the amino acid substitutions L234A, L235A, and P329G (numberings according to Kabat EU index),
wherein the second and the third antigen-binding moiety are each fused at the C-terminus of the Fab heavy chain to the N-terminus of one of the subunits of the Fc domain, and the first antigen-binding moiety is fused at the C-terminus of the Fab heavy chain to the N-terminus of the Fab heavy chain of the second antigen-binding moiety.
47. The T cell activating bispecific antigen-binding molecule of claim 46 , wherein the second antigen-binding moiety comprises a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 3 and a light chain variable region comprising the amino acid sequence of SEQ ID NO: 7.
48. The T cell activating bispecific antigen-binding molecule of claim 46 , comprising a polypeptide that is at least 95% identical to the sequence of SEQ ID NO: 34, a polypeptide that is at least 95% identical to the sequence of SEQ ID NO: 36, a polypeptide that is at least 95% identical to the sequence of SEQ ID NO: 37, and a polypeptide that is at least 95% identical to the sequence of SEQ ID NO: 38.
49. The T cell activating bispecific antigen-binding molecule of claim 46 , comprising a polypeptide comprising the amino acid sequence of SEQ ID NO: 34, a polypeptide comprising the amino acid sequence of SEQ ID NO: 36, a polypeptide comprising the amino acid sequence of SEQ ID NO: 37, and a polypeptide comprising the amino acid sequence of SEQ ID NO: 38.
50. A pharmaceutical composition comprising the T cell activating bispecific antigen-binding molecule of claim 49 .