IP Library › Granted Patent US 10,858,760
Granted Patent B2
US 10,858,760 · App. 15/579,100 · Granted Dec 8, 2020

T cell receptor library

Inventors: Dolores Schendel (Munich, DE); Slavoljub Milosevic (Munich, DE); Christian Ellinger (Munich, DE); Carina Wehner (Munich, DE)
Assignee: MEDIGENE IMMUNOTHERAPIES GMBH
C40B40/10C12N15/1093C07K14/7051C12N2740/10043C12N2740/13043C12N2740/15043C40B40/08
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Quick Facts
Patent No.
US 10,858,760
App. No.
15/579,100
Granted
Dec 8, 2020
Kind
B2
Abstract

The invention relates to a library for the expression of all functional TCR types comprising 45 TCR constructs each encoding one of the 45 different TCR α chains and 47 TCR constructs each encoding one of the 47 different TCR β chains, wherein each of the 45 TCR constructs encoding one of 45 different TCR α chain comprises the following building blocks one of the variable AV segments AVseg1 to AVseg45, and a constant AC segment, and wherein each of the 47 TCR constructs encoding one of 47 different TCR β chains comprises one of the variable BV segments BVseg1 to BVseg47, and a constant BC segment.

Claims (37)

1. A DNA library for the expression of all functional TCR types comprising 45 TCR constructs, each encoding one of the 45 different TCR α chains, and 47 TCR constructs, each encoding one of the 47 different TCR β chains,

wherein each of the 45 TCR constructs encoding one of the 45 different TCR α chains comprises the following building blocks:

(i) one of the variable AV segments coding for a variable TCR α chain region, which is at least 80% identical to an amino acid sequence set forth in SEQ ID No: 100 to SEQ ID No: 144, and

(ii) a constant AC segment having 90% identity to the nucleic acid sequence set forth in SEQ ID NOs: 1, 2, or 6; and

wherein each of the 47 TCR constructs encoding one of the 47 different TCR β chains comprises the following building blocks:

(iii) one of the variable BV segments coding for a variable TCR β chain region, which is at least 80% identical to an amino acid sequence set forth in SEQ ID No: 145 to SEQ ID No: 191; and

(iv) a constant BC segment having 90% identity to the nucleic acid sequence set forth in SEQ ID NOs: 3, 4, 5, or 7; and

wherein the building blocks contain at least one combination site at the 5′-end and at least one combination site at the 3′-end, and wherein the TCR constructs are integrated into an in vitro transcription mRNA (ivtRNA) backbone vector.

2. The DNA library according to claim 1 , wherein the combination site at the 3′-end of a first building block is compatible to the combination site at the 5′-end of a second building block, which is connected to the 3′-end of the first building block.

3. The DNA library according to claim 1 , wherein the variable TCR α chain regions are at least 90% identical to the amino acid sequences set forth in SEQ ID No: 100 to SEQ ID No: 144, and wherein the variable TCR β chain regions are at least 90% identical to the amino acid sequences set forth in SEQ ID No: 145 to SEQ ID No: 191.

4. The DNA library according to claim 3 , further comprising the following building blocks:

(i) a linker sequence connecting the 3′-end of the AV segment with the 5′-end of the AC segment; and

(ii) a linker sequence connecting the 3′-end of the BV segment with the 5′-end of the BC segment.

5. The DNA library according to claim 1 , wherein the variable AV segments code for variable TCR α chain regions that have amino acid sequences set forth in SEQ ID No: 100 to SEQ ID No: 144, and wherein the variable BV segments code for variable TCR chain regions that have amino acid sequences set forth in SEQ ID No: 145 to SEQ ID No: 191.

6. The DNA library according to claim 1 , wherein the variable AV segments have nucleic acid sequences set forth in SEQ ID No: 8 to SEQ ID No: 52, and wherein the variable BV segments have nucleic acid sequences set forth in SEQ ID No: 53 to SEQ ID No: 99.

7. The DNA library according to claim 1 , wherein a TCR construct encoding one TCR α chain and one TCR β chain is integrated into the backbone vector, wherein in the TCR construct encoding one TCR α chain and one TCR β chain, the sequence encoding one TCR α chain and the sequence encoding one TCR β chain are linked by a ribosomal skipping element.

8. The DNA library according to claim 1 , wherein the ivtRNA backbone vector comprises at least one RNA stabilizing sequence.

9. The DNA library according to claim 4 , wherein replacement of the linker sequence connecting the 3′-end of the AV segment with the 5′-end of the AC segment by a CDR3A sequence and a AJ sequence results in a construct encoding a functional TCR α chain, and replacement of the second linker sequence connecting the 3′-end of the AV segment with the 5′-end of the AC segment by a CDR3B sequence, and a BD and BJ region results in a construct encoding a functional TCR β chain.

10. The DNA library according to claim 4 , wherein the variable segment, the linker sequence, and the constant segment can be replaced in a single cloning step.

11. The DNA library according to claim 4 ,

wherein the variable AV segment is preceded by a NotI and/or AgeI restriction site and is followed by a FspI restriction site;

the linker sequence specific for the A segment is preceded by a FspI restriction site and is followed by a BspEI and/or a DraIII restriction site; and

the constant AC segment is preceded by a BspEI and/or DraIII restriction site and is followed by a MluI and/or ClaI and/or EcoRI restriction site; and

wherein the variable BV segment is preceded by a NotI and/or AgeI restriction site and is followed by a FspI restriction site;

the linker sequence specific for the B segment is preceded by a FspI restriction site and is followed by a BstEII restriction site; and

the constant BC segment is preceded by a BspEII restriction site and is followed by a MluI and/or ClaI and/or EcoRI restriction site.

12. A DNA library of cell clones expressing TCRs comprising a population of cell clones expressing 45 different TCR α chains and a population of cell clones expressing 47 different TCR β chains,

wherein each of the cell clones expressing different TCR α chains comprises a construct encoding one of the 45 different TCR α chains according to claim 1 , and one TCR construct encoding a TCR β chain; and

wherein each of the cell clones expressing different TCR β chains comprises a construct encoding one of the 47 different TCR β chains according to claim 1 and one TCR construct encoding a TCR α chain.

13. The DNA library of cell clones according to claim 12 , wherein the cell clones are selected from:

a BW−/− cell line deficient of a functional TCR;

a Jurkat cell line deficient of a functional TCR; or

a BW−/− cell line deficient of a functional TCR and a Jurkat cell line deficient of a functional TCR.

14. The DNA library according to claim 7 , wherein the ribosomal skipping element is P2A.

15. The DNA library according to claim 8 , wherein the at least one RNA stabilizing sequence is a poly-adenine tail, wherein the poly adenine tail comprises at least 110 adenines.

16. The DNA library of claim 1 , wherein the constant AC segment has the nucleic acid sequence set forth in SEQ ID NOs: 1, 2, or 6.

17. The DNA library of claim 16 , wherein the constant BC segment has the nucleic acid sequence set forth in SEQ ID NOs: 3, 4, 5, or 7.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 18, 2018
From: SCHENDEL, DOLORES; MILOSEVIC, SLAVOLJUB; ELLINGER, CHRISTIAN; WEHNER, CARINA
To: MEDIGENE IMMUNOTHERAPIES GMBH
Reel/Frame 045846/0536 →
Priority Claims (1)
EP 15170157 · Jun 1, 2015 · regional
Continuity (1)
Related Publication 20180245242A1 · Aug 30, 2018