IP Library › Granted Patent US 10,973,830
Granted Patent B2
US 10,973,830 · App. 16/372,080 · Granted Apr 13, 2021

Substituted quinoxaline DNA-PK inhibitors

Inventors: John Patrick Maxwell (Hingham, MA); Paul S. Charifson (Framingham, MA); Qing Tang (Acton, MA); Steven M. Ronkin (Watertown, MA); Katrina Lee Jackson (Cambridge, MA); Albert Charles Pierce (Cambridge, MA); David J. Lauffer (Stow, MA); Pan Li (Lexington, MA); Simon Giroux (Cambridge, MA); Jinwang Xu (Framingham, MA); Kevin Michael Cottrell (Cambridge, MA); Mark A. Morris (Somerville, MA); Nathan D. Waal (Cambridge, MA); John J. Court (Littleton, MA); Wenxin Gu (Concord, MA); Hongbo Deng (Southborough, MA)
Assignee: Vertex Pharmaceuticals Incorporated
A61K31/5377A61K31/506A61K31/5386C07D241/40C07D241/42C07D241/44C07D271/12C07D401/12C07D401/14C07D403/12C07D403/14C07D405/12C07D405/14C07D413/04C07D413/12C07D413/14C07D417/12C07D471/04C07D473/40C07D475/00C07D487/04C07D491/048C07D491/052C07D491/056C07D491/08C07D498/08C07D513/04
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Quick Facts
Patent No.
US 10,973,830
App. No.
16/372,080
Granted
Apr 13, 2021
Kind
B2
Abstract

The present invention relates to Provided are compounds of Formula (I): wherein R 1 , R 2 , X, Ring A, Ring B, and Ring C are as defined herein. Compounds of Formula (I) are useful as inhibitors of DNA-PK. Also provided are pharmaceutical compositions comprising said compounds and methods of using the compounds and compositions in the treatment of various diseases, conditions, and disorders.

Claims (85)

1. A compound of Formula (I):

or a pharmaceutically acceptable salt thereof,

wherein:

Ring A is:

Ring B is:

each optionally substituted with one, two, three, or four fluoro, one or two hydroxy, or one or two C 1-4 alkyl, wherein the C 1-4 alkyl is further optionally substituted with one, two, or three fluoro, one or two hydroxy, or one or two OC 1-2 alkyl;

Ring C is cyclohexyl;

X is —NH—, —O—, or —OC 1-4 alkylene-;

R 1 is hydrogen, C 0-4 alkyl-NHR 4 , C(O)NHR 4 , C(O)OR 4 , NHC(O)R 4 , NHC(O)NHR 4 , NHC(O)OR 4 , NHS(O) 2 R 4 , or OR 4 ;

R 2 is hydrogen, C 0-4 alkyl-NHR 4 , C(O)NHR 4 , C(O)OR 4 , NHC(O)R 4 , NHC(O)NHR 4 , NHC(O)OR 4 , NHS(O) 2 R 4 , or OR 4 ; or

R 1 and R 2 , together with the intervening carbon atom(s) to which they are attached, form a dioxane or dioxolane ring;

R 3 is hydrogen, fluoro, chloro, cyano, C 1-4 alkyl, C(O)H, C(O)NH 2 , C(O)NHC 1-2 alkyl, C(O)OH, C(O)OC 1-2 alkyl, or OC 1-2 alkyl, wherein each C 1-4 alkyl, C(O)NHC 1-2 alkyl, C(O)OC 1-2 alkyl, and OC 1-2 alkyl is optionally substituted with one, two, or three fluoro, one or two hydroxy, or one or two OC 1-2 alkyl;

each R 4 is independently hydrogen, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, C 3-5 cycloalkyl, or phenyl, wherein each C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, C 3-5 cycloalkyl and phenyl is optionally and independently substituted with one or more substituents independently selected from the group consisting of:

(a) one, two, three, or four fluoro, chloro, bromo, or C 1-4 alkyl;

(b) one, two, or three cyano;

(c) one or two OR 5 ;

(d) NO 2 , CH 2 OR 5 , C 0-4 alkyl-C(O)R 5 , C 0-4 alkyl-C(O)NH 2 , C 0-4 alkyl-C(O)N(R 5 ) 2 , C 0-4 alkyl-C(O)OR 5 , C 0-4 alkyl-N(R 5 )2, C 0-4 alkyl-NHC(O)R 5 , C 0-4 alkyl-O—C 1-4 alkyl, C 0-4 alkyl-O—C 0-4 alkyl-C 3-5 cycloalkyl, C 0-4 alkyl-C 3-5 cycloalkyl, C 2-4 alkenyl, C 2-4 alkynyl, C(O)NHC 1-4 alkyl, C(O)N(C 1-4 alkyl) 2 , C(O)NH(C 0-4 alkyl-C 3-5 cycloalkyl), C(O)OC 1-4 alkyl, C(O)OC 0-4 alkyl-C 3-5 cycloalkyl, or C 3-6 cycloalkyl;

(e) a heterocyclyl selected from the group consisting of azetidinyl, pyrrolidinyl, piperidinyl, oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, dihydropyranyl, piperazinyl, and morpholinyl; and

(f) a heteroaryl selected from the group consisting of pyrrolyl, pyrazolyl, triazolyl, tetrazolyl, furanyl, oxazolyl, and oxadiazolyl;

wherein each C 1-4 alkyl, CH 2 OR 5 , C 2-4 alkenyl, C 2-4 alkynyl, C 1-4 alkyl-C(O)R 5 , C 1-4 alkyl-C(O)NH 2 , C 1-4 alkyl-C(O)N(R 5 ) 2 , C 1-4 alkyl-NHC(O)R 5 , C 1-4 alkyl-N(R 5 ) 2 , C 0-4 alkyl-O—C 1-4 alkyl, C 0-4 alkyl-O—C 0-4 alkyl-C 3-5 cycloalkyl, C 0-4 alkyl-C 3-5 cycloalkyl, C(O)NHC 1-4 alkyl, C(O)NH(C 0-4 alkyl-C 3-5 cycloalkyl), C(O)N(C 1-4 alkyl) 2 , C 1-4 alkyl-C(O)OR 5 , C(O)OC 1-4 alkyl, C(O)OC 1-4 alkyl-C 3-5 cycloalkyl, C 3-6 cycloalkyl, heterocyclyl, and heteroaryl substituent is optionally and independently substituted with one, two, three, or four fluoro, one or two C 1-4 alkyl, one C(O)C 1-4 alkyl, one C(O)OC 1-4 alkyl, one C(O)OC 0-4 alkyl-C 3-5 cycloalkyl, one or two hydroxy, one or two OC 1-4 alkyl, or one or two SC 1-4 alkyl; or

each R 4 is independently selected from the group consisting of:

(i) a heterocyclyl selected from the group consisting of oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, dihydroisoxazolyl, pyrimidine-2,4-(1H,3H)-dionyl, dihydropyrrolopyrimidinyl, dihydrofuropyrimidinyl, dihydropyranopyrimidinyl, tetrahydropteridinyl, and tetrahydropyridopyrimidinyl; and

(ii) a heteroaryl selected from the group consisting of pyrrolyl, pyrazolyl, imidazolyl, triazolyl, oxazolyl, thiazolyl, isothiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrimidinonyl, pyrazinyl, and quinolinyl;

wherein each heterocyclyl and heteroaryl is optionally and independently substituted with one or more substituents independently selected from the group consisting of:

(a) one, two, three, or four fluoro, chloro, bromo, or C 1-4 alkyl;

(b) one, two, or three cyano;

(c) one or two OR 5 ;

(d) NO 2 , CH 2 OR 5 , C 2-4 alkenyl, C 2-4 alkynyl, C 0-4 alkyl-C(O)R 5 , C 0-4 alkyl-C(O)N(R 5 ) 2 , C 0-4 alkyl-NHC(O)R 5 , C 0-4 alkyl-C(O)OR 5 , C 0-4 alkyl-N(R 5 ) 2 , C 0-4 alkyl-O—C 1-4 alkyl, C 0-4 alkyl-O—C 0-4 alkyl-C 3-5 cycloalkyl, C 0-4 alkyl-C 3-5 cycloalkyl, C 0-4 alkyl-C(O)NH 2 , C(O)NHC 1-4 alkyl, C(O)N(C 1-4 alkyl) 2 , C(O)NH(C 0-4 alkyl-C 3-5 cycloalkyl), C(O)OC 1-4 alkyl, C(O)OC 0-4 alkyl-C 3-5 cycloalkyl, or C 3-6 cycloalkyl;

(e) a heterocyclyl selected from the group consisting of azetidinyl, pyrrolidinyl, piperidinyl, oxetanyl, tetrahydrofuranyl, dihydropyranyl, tetrahydropyranyl, piperazinyl, and morpholinyl; and

(f) a heteroaryl selected from the group consisting of pyrrolyl, pyrazolyl, triazolyl, tetrazolyl, furanyl, oxazolyl, and oxadiazolyl;

wherein each C 1-4 alkyl, CH 2 OR 5 , C 2-4 alkenyl, C 2-4 alkynyl, C 1-4 alkyl-C(O)R 5 , C 1-4 alkyl-C(O)NH 2 , c 1-4 alkyl-C(O)N(R 5 )2, C 1-4 alkyl-NHC(O)R 5 , C 1-4 alkyl-N(R 5 ) 2 , C 0-4 alkyl-O—C 1-4 alkyl, C 0-4 alkyl-O—C 0-4 alkyl-C 3-5 cycloalkyl, C 0-4 alkyl-C 3-5 cycloalkyl, C(O)NHC 1-4 alkyl, C(O)NH(C 0-4 alkyl-C 3-5 cycloalkyl), C(O)N(C 1-4 alkyl) 2 , C 1-4 alkyl-C(O)OR 5 , C(O)OC 1-4 alkyl, C(O)OC 0-4 alkyl-C 3-5 cycloalkyl, C 3-6 cycloalkyl, heterocyclyl, and heteroaryl substituent is optionally and independently substituted with one, two, three, or four fluoro, one or two C 1-4 alkyl, one C(O)C 1-4 alkyl, one C(O)OC 1-4 alkyl, one C(O)OC 0-4 alkyl-C 3-5 cycloalkyl, one or two hydroxy, one or two OC 1-4 alkyl, or one or two SC 1-4 alkyl; and

each R 5 is independently hydrogen, C 1-4 alkyl, imidazolyl, triazolyl, thiazolyl, pyridinyl, pyrimidinyl, oxetanyl, tetrahydrofuranyl, or tetrahydropyranyl, wherein the C 1-4 alkyl, imidazolyl, triazolyl, thiazolyl, pyridinyl, pyrimidinyl, oxetanyl, tetrahydrofuranyl, and tetrahydropyranyl are each optionally and independently substituted with one, two, or three fluoro, one chloro, one cyano, one or two C 1-2 alkyl, one hydroxymethyl, one or two hydroxy, one or two OC 1-2 alkyl, one pyrrolidinyl, one spirooxetanyl, or one triazolyl; or

two R 5 , together with the intervening nitrogen atom to which they are attached, form an azetidinyl, pyrrolidinyl, piperidinyl, piperazinyl, or morpholinyl;

with the proviso that R 1 and R 2 are not simultaneously hydrogen.

2. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 3 is hydrogen, C 1-4 alkyl, C(O)H, C(O)NH 2 , or OC 1-2 alkyl, wherein each C 1-4 alkyl and OC 1-2 alkyl is optionally substituted with one hydroxy.

3. The compound of claim 2 , or a pharmaceutically acceptable salt thereof, wherein R 3 is hydrogen.

4. The compound of claim 1 , wherein the compound is of Formula (III):

or a pharmaceutically acceptable salt thereof.

5. The compound of claim 4 , wherein the compound is of Formula (III-A-1):

or a pharmaceutically acceptable salt thereof.

6. The compound of claim 5 , or a pharmaceutically acceptable salt thereof, wherein R 2 is C 0-4 alkyl-NHR 4 or OR 4 .

7. The compound of claim 4 , wherein the compound is of Formula (III-B-1):

or a pharmaceutically acceptable salt thereof.

8. The compound of claim 7 , or a pharmaceutically acceptable salt thereof, wherein R 1 is C 0-4 alkyl-NHR 4 or OR 4 .

9. The compound of claim 4 , wherein the compound is of Formula (III-C-1):

or a pharmaceutically acceptable salt thereof.

10. The compound of claim 9 , or a pharmaceutically acceptable salt thereof, wherein R 2 is C 0-4 alkyl-NHR 4 or OR 4 .

11. The compound of claim 4 , wherein the compound is of Formula (III-D-1):

or a pharmaceutically acceptable salt thereof.

12. The compound of claim 11 , or a pharmaceutically acceptable salt thereof, wherein R 1 is C 0-4 alkyl-NHR 4 or OR 4 .

13. The compound of claim 11 , wherein the compound is of Formula (III-D-3):

or a pharmaceutically acceptable salt thereof,

wherein:

Y is —NH— or —O—.

14. The compound of claim 4 , or a pharmaceutically acceptable salt thereof, wherein Ring B is:

15. The compound of claim 4 , or a pharmaceutically acceptable salt thereof, wherein X is —NH—.

16. The compound of claim 4 , or a pharmaceutically acceptable salt thereof, wherein X is —O—.

17. The compound of claim 16 , wherein the compound is of Formula (IV):

or a pharmaceutically acceptable salt thereof,

wherein:

R 3 is hydrogen, fluoro, chloro, cyano, C 1-4 alkyl, C(O)H, C(O)NH 2 , or OC 1-2 alkyl, wherein each C 1-4 alkyl and OC 1-2 alkyl is optionally substituted with one, two, or three fluoro or one hydroxy; and

R 4 is:

wherein:

X 1 is CH, CF, CCl, CC 1-2 alkyl, or N, wherein the CC 1-2 alkyl is optionally substituted with one, two, or three fluoro;

X 2 is CR 4c or N;

each of R 4a , R 4b , and R 4c is independently hydrogen; or

each of R 4a , R 4b , and R 4c is independently one or more substituents independently selected from the group consisting of:

(a) fluoro, chloro, bromo, or C 1-4 alkyl;

(b) cyano;

(c) NO 2 , C 0-4 alkyl-O—C 1-4 alkyl, C 0-4 alkyl-O—C 0-4 alkyl-C 3-5 cycloalkyl, C 0-4 alkyl-C 3-5 cycloalkyl, C 2-4 alkenyl, C 2-4 alkynyl, C(O)NH 2 , C(O)NHC 1-4 alkyl, C(O)N(C 1-4 alkyl) 2 , C(O)NH(C 0-4 alkyl-C 3-5 cycloalkyl), C(O)OC 1-4 alkyl, or C(O)OC 0-4 alkyl-C 3-5 cycloalkyl;

(d) a heterocyclyl selected from the group consisting of azetidinyl, piperidinyl, oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, dihydropyranyl, piperazinyl, and morpholinyl; and

(e) a heteroaryl selected from the group consisting of pyrrolyl, pyrazolyl, triazolyl, tetrazolyl, furanyl, oxazolyl, and oxadiazolyl;

wherein each heterocyclyl and heteroaryl substituent is optionally and independently substituted with one, two, three, or four fluoro, one or two C 1-4 alkyl, one C(O)C 1-4 alkyl, one C(O)OC 1-4 alkyl, one C(O)OC 0-4 alkyl-C 3-5 cycloalkyl, or one or two hydroxy; and

wherein each C 1-4 alkyl, C 0-4 alkyl-O—C 1-4 alkyl, C 0-4 alkyl-O—C 0-4 alkyl-C 3-5 cycloalkyl, C 0-4 alkyl-C 3-5 cycloalkyl, C(O)NHC 1-4 alkyl, C(O)NH(C 0-4 alkyl-C 3-5 cycloalkyl), C(O)N(C 1-4 alkyl) 2 , C(O)OC 1-4 alkyl, and C(O)OC 0-4 alkyl-C 3-5 cycloalkyl, substituent is optionally and independently substituted with one, two, or three fluoro, or one or two non-geminal hydroxy; or

R 4a and R 4c , together with the intervening atoms to which they are attached, form an optionally substituted heterocyclyl selected from the group consisting of:

with the proviso that X 1 and X 2 are not simultaneously N.

18. The compound of claim 1 , wherein the compound is selected from the group consisting of:

or a pharmaceutically acceptable salt thereof.

19. The compound of claim 1 , wherein the compound is selected from the group consisting of:

or a pharmaceutically acceptable salt thereof.

20. The compound of claim 1 , wherein the compound is:

or a pharmaceutically acceptable salt thereof.

21. A pharmaceutical composition comprising a pharmaceutically acceptable excipient and a compound of claim 1 , or a pharmaceutically acceptable salt thereof.

22. A method for inhibiting cancer cell growth in a patient, comprising administering to the patient an effective amount of the compound of claim 1 , or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of claim 21 .

23. The method of claim 22 , wherein the method further comprises administering to the patient one or more additional therapeutic agents.

Assignments (4)
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNMENT DOCUMENT PREVIOUSLY RECORDED AT REEL: 049474 FRAME: 0441. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT . Recorded Jan 26, 2023
From: MAXWELL, JOHN PATRICK; LI, PAN; CHARIFSON, PAUL S.; TANG, QING; RONKIN, STEVEN M.; JACKSON, KATRINA LEE; PIERCE, ALBERT CHARLES; LAUFFER, DAVID J.; GIROUX, SIMON
To: VERTEX PHARMACEUTICALS INCORPORATED
Reel/Frame 062514/0186 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNMENT SUBMITTED HEREWITH IS CORRECT PREVIOUSLY RECORDED AT REEL: 049473 FRAME: 0624. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Jan 26, 2023
From: XU, JINWANG; COTTRELL, KEVIN M.; MORRIS, MARK A.; WAAL, NATHAN D.; COURT, JOHN J.; GU, WENXIN; DENG, HONGBO
To: VERTEX PHARMACEUTICALS INCORPORATED
Reel/Frame 062514/0248 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 14, 2019
From: XU, JINWANG; COTTRELL, KEVIN M.; MORRIS, MARK A.; WAAL, NATHAN D.; COURT, JOHN J.; GU, WENXIN; DENG, HONGBO
To: VERTEX PHARMACEUTICALS INCORPORATED
Reel/Frame 049473/0624 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 14, 2019
From: MAXWELL, JOHN PATRICK; CHARIFSON, PAUL S.; TANG, QING; RONKIN, STEVEN M.; JACKSON, KATRINA LEE; PIERCE, ALBERT CHARLES; LAUFFER, DAVID J.; LI, PAN; GIROUX, SIMON
To: VERTEX PHARMACEUTICALS INCORPORATED
Reel/Frame 049474/0441 →
Continuity (5)
Continuation 15965489 · Apr 27, 2018
Division 15133378 · Apr 20, 2016
Division 14205657 · Mar 12, 2014
Provisional Application 61777816 · Mar 12, 2013
Related Publication 20190290654A1 · Sep 26, 2019
Cited By (1)
US 12,251,387