Pyrazolo-pyrimidin-amino-cycloalkyl compounds and their therapeutic uses

1. A compound of formula (I):

or a pharmaceutically acceptable salt thereof,

wherein:

z is an integer from 0 to 6;

ring A is a R 6 -substituted or unsubstituted cycloalkyl or R 6 -substituted or unsubstituted 3 to 5 membered heterocycloalkyl,

R 6 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 8 -substituted or unsubstituted alkyl, R 8 -substituted or unsubstituted heteroalkyl, R 8 -substituted or unsubstituted cycloalkyl, R 8 -substituted or unsubstituted heterocycloalkyl, R 8 -substituted or unsubstituted aryl, or R 8 -substituted or unsubstituted heteroaryl;

R 8 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCI 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 9 -substituted or unsubstituted alkyl, R 9 -substituted or unsubstituted heteroalkyl, R 9 -substituted or unsubstituted cycloalkyl, R 9 -substituted or unsubstituted heterocycloalkyl, R 9 -substituted or unsubstituted aryl, or R 9 -substituted or unsubstituted heteroaryl;

R 9 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCI 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 , unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, or unsubstituted heteroaryl;

L 1 is a bond;

L 2 is a bond, R 22 -substituted or unsubstituted alkylene, or R 22 -substituted or unsubstituted heteroalkylene;

R 22 is independently hydrogen, —F, —Cl, Br, —I, —CF 3 , —CHF 2 , —CH 2 F, —CCl 3 , —CHCl 2 , —CH 2 Cl, —CBr 3 , —CHBr 2 , —CH 2 Br, —CI 3 , —CHI 2 , —CH 2 I, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —N 3 , —CN, —SH, —SCH 3 , —SO 2 H, —SO 2 CH 3 , —SO 2 NH 2 , —SO 2 NHCH 3 , —NHC(O)NH 2 , —NHC(O)NHCH 3 , —NO 2 , —NH 2 , —NHCH 3 , —C(O)H, —C(O)CH 3 , —C(O)OH, —C(O)OCH 3 , —C(O)NH 2 , —C(O)NHCH 3 , —OH, —OCH 3 , —NHSO 2 H, —NHSO 2 CH 3 , —NHC(O)H, —NCH 3 C(O)H, —NHC(O)OH, —NCH 3 C(O)OH, —NHOH, —NCH 3 OH, —NCH 3 OCH 3 , unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, or unsubstituted heteroaryl;

R 1 is R 7 -substituted or unsubstituted aryl or R 7 -substituted or unsubstituted heteroaryl;

R 7 is halogen, —CF 3 , —CCl 3 , —CBr 3 , —C 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 10 -substituted or unsubstituted alkyl, R 10 -substituted or unsubstituted heteroalkyl, R 10 -substituted or unsubstituted cycloalkyl, R 10 -substituted or unsubstituted heterocycloalkyl, R 10 -substituted or unsubstituted aryl), or R 10 -substituted or unsubstituted heteroaryl;

R 10 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 11 -substituted or unsubstituted alkyl, R 11 -substituted or unsubstituted heteroalkyl, R 11 -substituted or unsubstituted cycloalkyl, R 11 -substituted or unsubstituted heterocycloalkyl, R 11 -substituted or unsubstituted aryl, or R 11 -substituted or unsubstituted heteroaryl;

R 11 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl), or unsubstituted heteroaryl;

R 2 is independently hydrogen, halogen, —CX 2 3 , —CHX 2 2 , —CH 2 X 2 , —OCX 2 3 , —OCHX 2 2 , —OCH 2 X 2 , —CN, —S(O) 2 R 2A , —SR 2A , —S(O)R 2A , —SO 2 NR 2A R 2B , —NHC(O)NR 2A R 2B , —N(O) 2 , —NR 2A R 2B , —NR 2A R 2B , —C(O)R 2A , —C(O)—OR 2A , —C(O)NR 2A R 2B , —C(O)NHNR 2A R 2B , —OR 2A , —NR 2A SO 2 R 2B , —NR 2A C(O)R 2B , —NR 2A C(O)OR 2B , —NR 2A OR 2B , —N 3 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl, wherein each substituted alkyl, substituted heteroalkyl, substituted cycloalkyl, substituted heterocycloalkyl, substituted aryl or substituted heteroaryl is substituted with at least one substituent group;

R 3 is independently halogen, —CX 3 3 , —CHX 3 2 , —CH 2 X 3 , —OCX 3 3 , —OCHX 3 2 , —OCH 2 X 3 , —CN, —S(O) 2 R 3A , —SR 3A , —S(O)R 3A , —SO 2 NR 3A R 3B , —NHC(O)NR 3A R 3B , —N(O) 2 , —NR 3A R 3B , —NHNR 3A R 3B , —C(O)R 3A , —C(O)—OR 3A , —C(O)NR 3A R 3B , —P(O)R 3A R 3B , —C(O)NHNR 3A R 3B , —OR 3A , —NR 3A SO 2 R 3B , —NR 3A C(O)R 3B , —NR 3A C(O)OR 3B , —NR 3A OR 3B , —N 3 , R 12 -substituted or unsubstituted alkyl, R 12 -substituted or unsubstituted heteroalkyl, R 12 -substituted or unsubstituted cycloalkyl, R 12 -substituted or unsubstituted heterocycloalkyl, R 12 -substituted or unsubstituted aryl, or R 12 -substituted or unsubstituted heteroaryl; or two R 3 may optionally be joined to form a R 12 -substituted or unsubstituted heterocycloalkyl or R 12 -substituted or unsubstituted heteroaryl;

R 12 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 13 -substituted or unsubstituted alkyl, R 13 -substituted or unsubstituted heteroalkyl, R 13 -substituted or unsubstituted cycloalkyl, R 13 -substituted or unsubstituted heterocycloalkyl, R 13 -substituted or unsubstituted aryl, or R 13 -substituted or unsubstituted heteroaryl;

R 13 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 14 -substituted or unsubstituted alkyl, R 14 -substituted or unsubstituted heteroalkyl, R 14 -substituted or unsubstituted cycloalkyl, R 14 -substituted or unsubstituted heterocycloalkyl, R 14 -substituted or unsubstituted aryl, or R 14 -substituted or unsubstituted heteroaryl;

R 14 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, or unsubstituted heteroaryl;

R 2A and R 2B are independently hydrogen, —F, —Cl, Br, —I, —CF 3 , —CHF 2 , —CH 2 F, —CCl 3 , —CHCl 2 , —CH 2 Cl, —CBr 3 , —CHBr 2 , —CH 2 Br, —CI 3 , —CHI 2 , —CH 2 I, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —N 3 , —CN, —SH, —SCH 3 , —SO 2 H, —SO 2 CH 3 , —SO 2 NH 2 , —SO 2 NHCH 3 , —NHC(O)NH 2 , —NHC(O)NHCH 3 , —NO 2 , —NH 2 , —NHCH 3 , —C(O)H, —C(O)CH 3 , —C(O)OH, —C(O)OCH 3 , —C(O)NH 2 , —C(O)NHCH 3 , —OH, —OCH 3 , —NHSO 2 H, —NHSO 2 CH 3 , —NHC(O)H, —NCH 3 C(O)H, —NHC(O)OH, —NCH 3 C(O)OH, —NHOH, —NCH 3 OH, —NCH 3 OCH 3 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl; R 2A and R 2B may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; wherein each substituted alkyl, substituted heteroalkyl, substituted cycloalkyl, substituted heterocycloalkyl, substituted aryl or substituted heteroaryl is substituted with at least one substituent group;

R 3A and R 3B are independently hydrogen, —F, —Cl, Br, —I, —CF 3 , —CHF 2 , —CH 2 F, —CCl 3 , —CHCl 2 , —CH 2 Cl, —CBr 3 , —CHBr 2 , —CH 2 Br, —CI 3 , —CHI 2 , —CH 2 I, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —N 3 , —CN, —SH, —SCH 3 , —SO 2 H, —SO 2 CH 3 , —SO 2 NH 2 , —SO 2 NHCH 3 , —NHC(O)NH 2 , —NHC(O)NHCH 3 , —NO 2 , —NH 2 , —NHCH 3 , —C(O)H, —C(O)CH 3 , —C(O)OH, —C(O)OCH 3 , —C(O)NH 2 , —C(O)NHCH 3 , —OH, —OCH 3 , —NHSO 2 H, —NHSO 2 CH 3 , —NHC(O)H, —NCH 3 C(O)H, —NHC(O)OH, —NCH 3 C(O)OH, —NHOH, —NCH 3 OH, —NCH 3 OCH 3 , R 12 -substituted or unsubstituted alkyl, R 12 -substituted or unsubstituted heteroalkyl, R 12 -substituted or unsubstituted cycloalkyl, R 12 -substituted or unsubstituted heterocycloalkyl, R 12 -substituted or unsubstituted aryl or R 12 -substituted or unsubstituted heteroaryl; R 3A and R 3B may optionally be joined to form a R 12 -substituted or unsubstituted heterocycloalkyl or R 12 -substituted or unsubstituted heteroaryl; and

X 2 and X 3 are independently halogen;

with the proviso that when ring A is cyclohexyl, then R 3 is not an ortho-substituted —NH 2 or —HNC═(O)t-BuO, or para-substituted —NHSO 2 CH 2 CH 2 CF 3 , —NHSO 2 CH 3 , or —OH.

2. The compound of claim 1 , wherein R 3 is not a substituted or unsubstituted amine attached to ring A at the ortho position.

3. The compound of claim 1 , wherein R 3 is not attached to ring A at the ortho position.

4. The compound of claim 1 , wherein L 2 is a bond.

5. The compound of claim 1 , wherein L 2 is substituted or unsubstituted C 1 -C 8 alkylene or substituted or unsubstituted 2 to 8 membered heteroalkylene.

6. The compound of claim 5 , wherein L 2 is unsubstituted C 1 -C 8 alkylene or unsubstituted 2 to 8 membered heteroalkylene.

7. The compound of claim 1 , having the formula:

or a pharmaceutically acceptable salt thereof,

wherein:

m is an integer from 1 to 4;

R 3.1 is independently hydrogen, halogen, —CX 3.1 3 , —CHX 3.1 2 , —CH 2 X 3.1 , —OCX 3.1 3 , —OCHX 3.1 2 , —OCH 2 X 3.1 , —CN, —S(O) 2 R 3.1A , —SR 3.1A , —S(O)R 3.1A , —SO 2 NR 3.1A R 3.1B , —NHC(O)NR 3.1A R 3.1B , —N(O) 2 , —NR 3.1A R 3.1B , —NHNR 3.1A R 3.1B , —C(O)R 3.1A , —C(O)—OR 3.1A , —C(O)NR 3.1A R 3.1B , —P(O)R 3.1A R 3.1B , —C(O)NHNR 3.1A R 3.1B , —OR 3.1A , —NR 3.1A SO 2 R 3.1B , —NR 3.1A C(O)R 3.1B , —NR 3.1A C(O)OR 3.1B , —NR 3.1A OR 3.1B , —N 3 , R 12 -substituted or unsubstituted alkyl, R 12 -substituted or unsubstituted heteroalkyl, R 12 -substituted or unsubstituted cycloalkyl, R 12 -substituted or unsubstituted heterocycloalkyl, R 12 -substituted or unsubstituted aryl, or R 12 -substituted or unsubstituted heteroaryl; or R 3.1 and R 3.2 may optionally be joined to form a R 12 -substituted or unsubstituted heterocycloalkyl or R 12 -substituted or unsubstituted heteroaryl;

R 3.2 is independently hydrogen, halogen, —CX 3.2 3 , —CHX 3.2 2 , —CH 2 X 3.2 , —OCX 3.2 3 , —OCHX 3.2 2 , —OCH 2 X 3.2 , —CN, —S(O) 2 R 3.2A , —SR 3.2A , —S(O)R 3.2A , —SO 2 NR 3.2A R 3.2B , —NHC(O)NR 3.2A R 3.2B , —N(O) 2 , —NR 3.2A R 3.2B , —NHNR 3.2A R 3.2B , —C(O)R 3.2A , —C(O)—OR 3.2A , —C(O)NR 3.2A R 3.2B , —P(O)R 3.2A R 3.2B , C(O)NHNR 3.2A R 3.2B , —OR 3.2A , —NR 3.2A SO 2 R 3.2B , —NR 3.2A C(O)R 3.2B , —NR 3.2A C(O)OR 3.2B , —NR 3.2A OR 3.2B , —N 3 , R 12 -substituted or unsubstituted alkyl, R 12 -substituted or unsubstituted heteroalkyl, R 12 -substituted or unsubstituted cycloalkyl, R 12 -substituted or unsubstituted heterocycloalkyl, R 12 -substituted or unsubstituted aryl, or R 12 -substituted or unsubstituted heteroaryl; or R 3.1 and R 3.2 may optionally be joined to form a R 12 -substituted or unsubstituted heterocycloalkyl or R 12 -substituted or unsubstituted heteroaryl; and

R 3.1A , R 3.1B , R 3.2A , and R 3.2B are independently hydrogen, —F, —Cl, Br, —I, —CF 3 , —CHF 2 , —CH 2 F, —CCl 3 , —CHCl 2 , —CH 2 Cl, —CBr 3 , —CHBr 2 , —CH 2 Br, —CI 3 , —CHI 2 , —CH 2 I, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —N 3 , —CN, —SH, —SCH 3 , —SO 2 H, —SO 2 CH 3 , —SO 2 NH 2 , —SO 2 NHCH 3 , —NHC(O)NH 2 , —NHC(O)NHCH 3 , —NO 2 , —NH 2 , —NHCH 3 , —C(O)H, —C(O)CH 3 , —C(O)OH, —C(O)OCH 3 , —C(O)NH 2 , —C(O)NHCH 3 , —OH, —OCH 3 , —NHSO 2 H, —NHSO 2 CH 3 , —NHC(O)H, —NCH 3 C(O)H, —NHC(O)OH, —NCH 3 C(O)OH, —NHOH, —NCH 3 OH, —NCH 3 OCH 3 , R 12 -substituted or unsubstituted alkyl, R 12 -substituted or unsubstituted heteroalkyl, R 12 -substituted or unsubstituted cycloalkyl, R 12 -substituted or unsubstituted heterocycloalkyl, R 12 -substituted or unsubstituted aryl or R 12 -substituted or unsubstituted heteroaryl; or R 3.1A and R 3.1B may optionally be joined to form a R 12 -substituted or unsubstituted heterocycloalkyl or R 12 -substituted or unsubstituted heteroaryl; or R 3.2A and R 3.2B may optionally be joined to form a R 12 -substituted or unsubstituted heterocycloalkyl or R 12 -substituted or unsubstituted heteroaryl.

8. The compound of claim 7 having the formula:

or a pharmaceutically acceptable salt thereof.

9. The compound of claim 1 , wherein:

ring A is substituted or unsubstituted C 4 -C 7 cycloalkyl, or substituted or unsubstituted 4 to 5-membered heterocycloalkyl.

10. The compound of claim 7 , having the formula:

wherein:

R 4 is hydrogen, R 15 -substituted or unsubstituted C 1 -C 8 alkyl, R 15 -substituted or unsubstituted 2 to 8 membered heteroalkyl, R 15 -substituted or unsubstituted C 3 -C 8 cycloalkyl, or R 15 -substituted or unsubstituted 3 to 8 membered heterocycloalkyl;

R 15 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 16 -substituted or unsubstituted alkyl, R 16 -substituted or unsubstituted heteroalkyl, R 16 -substituted or unsubstituted cycloalkyl, R 16 -substituted or unsubstituted heterocycloalkyl, R 16 -substituted or unsubstituted aryl, or R 16 -substituted or unsubstituted heteroaryl;

R 16 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 17 -substituted or unsubstituted alkyl, R 17 -substituted or unsubstituted heteroalkyl, R 17 -substituted or unsubstituted cycloalkyl, R 17 -substituted or unsubstituted heterocycloalkyl, R 17 -substituted or unsubstituted aryl, or R 17 -substituted or unsubstituted heteroaryl;

R 17 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, or unsubstituted heteroaryl;

R 5 is independently hydrogen, R 18 -substituted or unsubstituted C 1 -C 8 alkyl, R 18 -substituted or unsubstituted 2 to 8 membered heteroalkyl, R 18 -substituted or unsubstituted C 3 -C 8 cycloalkyl, or R 18 -substituted or unsubstituted 3 to 8 membered heterocycloalkyl;

R 18 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 19 -substituted or unsubstituted alkyl, R 19 -substituted or unsubstituted heteroalkyl, R 19 -substituted or unsubstituted cycloalkyl, R 19 -substituted or unsubstituted heterocycloalkyl, R 19 -substituted or unsubstituted aryl, or R 19 -substituted or unsubstituted heteroaryl;

R 19 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, R 20 -substituted or unsubstituted alkyl, R 20 -substituted or unsubstituted heteroalkyl, R 20 -substituted or unsubstituted cycloalkyl, R 20 -substituted or unsubstituted heterocycloalkyl, R 20 -substituted or unsubstituted aryl, or R 20 -substituted or unsubstituted heteroaryl;

R 20 is independently halogen, —CF 3 , —CCl 3 , —CBr 3 , —CI 3 , —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —N 3 , —SH, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC(O)NHNH 2 , —NHSO 2 H, —NHC(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, unsubstituted alkyl, unsubstituted heteroalkyl, unsubstituted cycloalkyl, unsubstituted heterocycloalkyl, unsubstituted aryl, or unsubstituted heteroaryl;

wherein R 4 and R 5 may optionally be joined to form a R 15 -substituted or unsubstituted C 3 -C 8 cycloalkyl, R 15 -substituted or unsubstituted 3 to 8 membered heterocycloalkyl or R 15 -substituted or unsubstituted 5 or 6 membered heteroaryl.

11. The compound of claim 10 , wherein R 4 and R 5 are independently hydrogen or substituted or unsubstituted C 1 -C 4 alkyl.

12. The compound of claim 11 , wherein R 4 and R 5 are independently hydrogen, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tert-butyl, propan-1-ol, 2,2-difluorobutane, or 2-fluorobutane.

13. The compound of claim 10 , wherein R 4 and R 5 are independently hydrogen or substituted or unsubstituted 2 to 4 membered heteroalkyl.

14. The compound of claim 13 , wherein R 4 and R 5 are independently hydrogen, 1-methoxypropane, 1-methoxy-2-methylpropane, N,N-dimethylpropan-1-amine, 1-(methylsulfonyl)propane, (2,2-difluorobutyl)-1-oxidane, 1-(1-azaneyl)-2,2-difluoropropan-1-one, methyl(methylimino)(propyl)-6-sulfanone, or 2-methoxy-2-methylbutane.

15. The compound of claim 10 , wherein R 4 and R 5 are independently hydrogen or R 4 and R 5 are joined together to form a substituted or unsubstituted C 3 -C 5 cycloalkyl.

16. The compound of claim 15 , wherein R 4 and R 5 are independently hydrogen or R 4 and R 5 are joined together to form a substituted or unsubstituted cyclobutyl or cyclopentyl.

17. The compound of claim 10 , wherein R 4 and R 5 are independently hydrogen, or R 4 and R 5 are joined together to form a substituted or unsubstituted C 3 -C 7 heterocycloalkyl.

18. The compound of claim 17 , wherein R 4 and R 5 are independently hydrogen, or R 4 and R 5 are joined together to form pyrrolidinyl, morpholinyl, piperazinyl, azetidinyl, 1,4-piperazin-2-one, piperidinyl, 1,3-imidazolidin-4-one, 1,3-imidazolidine, 6-oxa-2-azaspiro [4.5]decane, tetrahydropyranyl, 2-oxa-5,2-azabicyclo[2.2.1]heptane, (1R,5S)-3-oxa-8-azabicyclo[3.2.1]octane, 2,6-diazaspiro[3,4]octane, 4-thiomorpholine-1,1-dioxide, 4-thiomorpholine-1-oxide, tetrahydro-2H-thiopyran-1,1-oxide, 1-oxa-8-azaspiro[4,5]decane, 1-pyrrolidin-2-one, 1-imidazolidin-4-one, 2,7-diazaspiro[4.4]nolan-1-one, tetrahydro-1H-8-pyrazino[3,4-c][1,4]oxazin-4(3H)-one, or hexahydro-1H-8-pyrazino[3,4-c][1,4]oxazine.

19. The compound of claim 1 , wherein:

R 1 is R 7 -substituted or unsubstituted C 6 -C 10 aryl or R 7 -substituted or unsubstituted 5 to 10 membered heteroaryl;

R 7 is independently hydrogen, —F, —Cl, Br, —I, —CF 3 , —CHF 2 , —CH 2 F, —CCl 3 , —CHCl 2 , —CH 2 Cl, —CBr 3 , —CHBr 2 , —CH 2 Br, —CI 3 , —CHI 2 , —CH 2 I, —OCF 3 , —OCCl 3 , —OCBr 3 , —OCI 3 , —OCHF 2 , —OCHCl 2 , —OCHBr 2 , —OCHI 2 , —OCH 2 F, —OCH 2 Cl, —OCH 2 Br, —OCH 2 I, —N 3 , —CN, —SH, —SCH 3 , —SO 2 H, —SO 2 CH 3 , —SO 2 NH 2 , —SO 2 NHCH 3 , —NHC(O)NH 2 , —NHC(O)NHCH 3 , —NO 2 , —NH 2 , —NHCH 3 , —C(O)H, —C(O)CH 3 , —C(O)OH, —C(O)OCH 3 , —C(O)NH 2 , —C(O)NHCH 3 , —OH, —OCH 3 , —NHSO 2 H, —NHSO 2 CH 3 , —NHC(O)H, —NCH 3 C(O)H, —NHC(O)OH, —NCH 3 C(O)OH, —NHOH, —NCH 3 OH, —NCH 3 OCH 3 , substituted or unsubstituted C 1 -C 8 alkyl, substituted or unsubstituted 2 to 8 membered heteroalkyl, substituted or unsubstituted C 3 -C 8 cycloalkyl, substituted or unsubstituted 3 to 8 membered heterocycloalkyl, substituted or unsubstituted C 6 -C 10 aryl, or substituted or unsubstituted 5 to 10 membered heteroaryl.

20. The compound of claim 19 , wherein:

R 1 is R 7A -substituted or unsubstituted phenyl, R 7A -substituted or unsubstituted quinolonyl, or R 7A -substituted or unsubstituted pyridinyl.

21. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein:

R 2 is halogen or substituted or unsubstituted C 1 -C 2 -alkyl.

22. The compound of claim 21 , wherein R 2 is halogen.

23. The compound of claim 22 , wherein halogen is Cl or Br.

24. The compound of claim 21 , wherein R 2 is substituted or unsubstituted C 1 -C 2 -alkyl.

25. The compound of claim 24 , wherein R 2 is methyl.

26. A pharmaceutical composition comprising a compound of claim 1 , and a pharmaceutically acceptable excipient.

27. A method of treating a disease or disorder mediated by GCN2, comprising administering to a subject in need thereof a therapeutically effective amount of the compound of formula (I) of claim 1 , wherein the disease or disorder is cancer and the cancer is melanoma, non-small cell lung cancer, bladder cancer, pancreatic cancer, head and neck cancer, or brain tumor.

28. A method of treating a disease or disorder mediated by GCN2, comprising administering to a subject in need thereof a therapeutically effective amount of a pharmaceutical composition of claim 26 , wherein the disease or disorder is cancer and the cancer is melanoma, non-small cell lung cancer, bladder cancer, pancreatic cancer, head and neck cancer, or brain tumor.

29. The method of claim 27 , comprising administering a compound of Formula (II), a compound of formula (III), a compound of formula (IV), or a pharmaceutically acceptable salt thereof.

30. The compound of claim 7 , wherein R 3.1 is independently hydrogen, —C(O)NR 3.1A R 3.1B , —OR 3.1A or unsubstituted alkyl; and R 3.2 is —C(O)NR 3.2A R 3.2B , —OR 3.2 , or unsubstituted alkyl.

31. The compound of claim 1 , wherein R 2 is halogen.

32. The compound of claim 7 , wherein R 2 is halogen.

33. The compound of claim 8 , wherein R 2 is halogen.

34. The compound of claim 8 having the formula:

or a pharmaceutically acceptable salt thereof, wherein X is N or CH.

35. The compound of claim 34 , wherein R 3.2 is —OH or —C(O)NH—CH 3 .

36. A compound having the formula:

or a pharmaceutically acceptable salt thereof.

37. The compound of claim 36 having the formula:

or a pharmaceutically acceptable salt thereof.

38. A compound having the formula:

or a pharmaceutically acceptable salt thereof.

39. The compound of claim 38 having the formula:

or a pharmaceutically acceptable salt thereof.

40. The compound of claim 8 having the formula:

or a pharmaceutically acceptable salt thereof.

41. The compound of claim 40 , wherein R 1 is R 7 -substituted aryl, R 3.1 is unsubstituted alkyl and R 3.2 is —OR 3.2A .

42. The compound of claim 41 , wherein R 1 is R 7 -substituted quinazolinyl, R 3.1 is methyl, and R 3.2 is —OH.

43. The compound of claim 8 having the formula:

or a pharmaceutically acceptable salt thereof.

44. The compound of claim 43 , wherein R 3.1 is hydrogen and R 3.2 is R 12 -substituted heteroalkyl.

45. The compound of claim 44 , wherein R 3.2 is substituted N-methylacetamide.

46. The compound of claim 43 having the formula:

or a pharmaceutically acceptable salt thereof.