IP Library › Granted Patent US 11,261,214
Granted Patent B2
US 11,261,214 · App. 16/636,105 · Granted Mar 1, 2022

Bicyclic peptide ligand specific for CD137

Inventors: Liuhong Chen (Cambridge, GB); Rachid Lani (Cambridge, GB); Kevin McDonnell (Lexington, MA); Gemma Mudd (Cambridge, GB); Peter Park (Lincoln, MA)
Assignee: BicycleTx Limited
C07K7/64A61K47/64A61K38/00
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Quick Facts
Patent No.
US 11,261,214
App. No.
16/636,105
Granted
Mar 1, 2022
Kind
B2
Abstract

The present invention relates to polypeptides which are covalently bound to molecular scaffolds such that two or more peptide loops are subtended between attachment points to the scaffold. In particular, the invention describes peptides which are high affinity binders of CD137. The invention also includes drug conjugates comprising said peptides, conjugated to one or more effector and/or functional groups, to pharmaceutical compositions comprising said peptide ligands and drug conjugates and to the use of said peptide ligands and drug conjugates in preventing, suppressing or treating a disease or disorder mediated by CD137.

Claims (1008)

1. A peptide ligand specific for CD137 comprising a polypeptide comprising at least three cysteine residues, separated by two loop sequences, and a molecular scaffold which forms covalent bonds with the cysteine residues of the polypeptide such that two polypeptide loops are formed on the molecular scaffold, which comprises an amino acid sequence selected from:

(SEQ ID NO: 41)

C i -I/L/M/V-E/D/P/S-P/E/A-G-P/Q-Y/F-C ii -Y-A-D-P-

Y/M-M/L/Y-C iii ;

(SEQ ID NO: 20)

C i -I-E-E-G-Q-Y-C ii -X 1 -X 2 -D-X 3 -Y/Q/M-X 4 -C iii ;

(SEQ ID NO: 21)

C i -D-I-G-P-P-Y-C ii -Y-R/A-D-M/P-Y-M-C iii ;

(SEQ ID NO: 22)

C i -D-E-W-G-L-F/Y-C ii -I/F-P/A-H-S/P-D-C iii ;

and

(SEQ ID NO: 19)

C i IEPGPFC ii YADPYMC iii ;

wherein X 1 -X 4 represent any amino acid residue and C i , C ii and C iii represent first, second and third cysteine residues, respectively or a pharmaceutically acceptable salt thereof.

2. The peptide ligand as defined in claim 1 , wherein the peptide ligand of C i -I-E-E-G-Q-Y-C ii -X 1 -X 2 -D-X 3 -Y/Q-XC iii (SEQ ID NO: 20) comprises an amino acid sequence selected from any one of SEQ ID NOS: 1-14:

(SEQ ID NO: 1)

C i IEEGQYC ii YRDMYMC iii ;

(SEQ ID NO: 2)

C i IEEGQYC ii YADPYMC iii ;

(SEQ ID NO: 3)

C i IEEGQYC ii YADPYYC iii ;

(SEQ ID NO: 4)

C i IEEGQYC ii YSDPYYC iii ;

(SEQ ID NO: 5)

C i IEEGQYC ii FADPYMC iii ;

(SEQ ID NO: 6)

C i IEEGQYC ii YADHQLC iii ;

(SEQ ID NO: 7)

C i IEEGQYC ii HADPYYC iii ;

(SEQ ID NO: 8)

C i IEEGQYC ii HADPYFC iii ;

(SEQ ID NO: 9)

C i IEEGQYC ii YADHYMC iii ;

(SEQ ID NO: 10)

C i IEEGQYC ii YADPYLC iii ;

(SEQ ID NO: 11)

C i IEEGQYC ii YSDPYLC iii ;

(SEQ ID NO: 12)

C i IEEGQYC ii FADPYLC iii ;

(SEQ ID NO: 13)

C i IEEGQYC ii HADPYMC iii ;

and

(SEQ ID NO: 14)

C i IEEGQYC ii HADPQMC iii ;

or an amino acid sequence selected from:

A-(SEQ ID NO: 1)-A (herein referred to as 74-01-00-N004);

A-(SEQ ID NO: 2)-A (herein referred to as 74-01-01-N001);

A-(SEQ ID NO: 3)-A (herein referred to as 74-01-02-N001);

A-(SEQ ID NO: 4)-A (herein referred to as 74-01-03-N001);

A-(SEQ ID NO: 5)-A (herein referred to as 74-01-04-N001);

A-(SEQ ID NO: 6)-A (herein referred to as 74-01-05-N001);

A-(SEQ ID NO: 7)-A (herein referred to as 74-01-06-N001);

A-(SEQ ID NO: 8)-A (herein referred to as 74-01-07-N001);

A-(SEQ ID NO: 9)-A (herein referred to as 74-01-08-N001);

A-(SEQ ID NO: 10)-A (herein referred to as 74-01-09-N001);

A-(SEQ ID NO: 10)-SVG (herein referred to as 74-01-09-T03-N002);

A-(SEQ ID NO: 11)-A (herein referred to as 74-01-10-N001);

A-(SEQ ID NO: 12)-A (herein referred to as 74-01-11-N001);

A-(SEQ ID NO: 13)-A (herein referred to as 74-01-13-N001); and

A-(SEQ ID NO: 14)-A (herein referred to as 74-01-14-N001).

3. The peptide ligand as defined in claim 1 , wherein the peptide ligand C i -D-I-G-P-P-Y-C ii -Y-R/A-D-M/P-Y-M-C iii (SEQ ID NO: 21) comprises an amino acid sequence selected from:

(SEQ ID NO: 15)

C i DIGPPYC ii YRDMYMC iii ;

and

(SEQ ID NO: 16)

C i DIGPPYC ii YADPYMC iii ;

or an amino acid sequence selected from:

A-(SEQ ID NO: 15)-A (herein referred to as 74-01-16-N001); and

A-(SEQ ID NO: 16)-A (herein referred to as 74-01-17-N001).

4. The peptide ligand as defined in claim 1 , wherein the peptide ligand of C i -D-E-W-G-L-F/Y-C ii -I/F-P/A-H-S/P-D-C iii (SEQ ID NO: 22) comprises an amino acid sequence selected from:

(SEQ ID NO: 17)

C i DEWGLFC ii IPHSDC iii ;

and

(SEQ ID NO: 18)

C i DEWGLYC ii FAHPDC iii ;

or an amino acid sequence selected from:

Ac-A-(SEQ ID NO: 17)-A (herein referred to as 74-02-00-N004); and

A-(SEQ ID NO: 18)-A (herein referred to as 74-02-01-N001).

5. The peptide ligand as defined in claim 1 , wherein the peptide ligand of C i IEPGPFC ii YADPYMC iii (SEQ ID NO: 19) comprises an amino acid sequence of: A-(SEQ ID NO: 19)-NRV (herein referred to as 74-19-00-T01-N002).

6. A peptide ligand specific for CD137 comprising a polypeptide comprising at least three cysteine residues, separated by two loop sequences, and a molecular scaffold which forms covalent bonds with the cysteine residues of the polypeptide such that two polypeptide loops are formed on the molecular scaffold, which comprises an amino acid sequence selected from:

(SEQ ID NO: 23)

C i IEEGQYC ii FADPY(Nle)C iii ;

(SEQ ID NO: 24)

C i IKEGQYC ii FADPY(Nle)C iii ;

(SEQ ID NO: 25)

C i IEKGQYC ii FADPY(Nle)C iii ;

(SEQ ID NO: 26)

C i IEE(D-K)QYC ii FADPY(Nle)C iii ;

(SEQ ID NO: 27)

C i IEEGKYC ii FADPY(Nle)C iii ;

(SEQ ID NO: 28)

C i IEEGQYC ii KADPY(Nle)C iii ;

(SEQ ID NO: 29)

C i IEEGQYC ii FADKY(Nle)C iii ;

(SEQ ID NO: 30)

C i IEEGQYC ii FADPYKC iii ;

(SEQ ID NO: 40; 74-22-00)

C i LPPGQYC ii FPDLLLC iii

(SEQ ID NO: 31; BCY3814)

A-C i IEEGQYC ii FADPY(Nle)C iii -A;

(SEQ ID NO: 32; BCY7732)

Ac-A-C i IEEGQYC ii FADPY(Nle)C iii -Dap;

(SEQ ID NO: 33; BCY7733)

Ac-A-C i IKEGQYC ii FADPY(Nle)C iii -A;

(SEQ ID NO: 34; BCY7734)

Ac-A-C i IEKGQYC ii FADPY(Nle)C iii -A;

(SEQ ID NO: 35; BCY7735)

Ac-A-C i IEE(D-K)QYC ii FADPY(Nle)C iii -A;

(SEQ ID NO: 36; BCY7736)

Ac-A-C i IEEGKYC ii FADPY(Nle)C iii -A;

(SEQ ID NO: 37; BCY7737)

Ac-A-C i IEEGQYC ii KADPY(Nle)C iii -A;

(SEQ ID NO: 38; BCY7738)

Ac-A-C i IEEGQYC ii FADKY(Nle)C iii -A;

and

(SEQ ID NO: 39; BCY7739)

Ac-A-C i IEEGQYC ii FADPYKC iii -A;

or an amino acid sequence selected from:

SEQ ID

Peptide Number

NO:

Sequence

BCY633

42

[B-Ala]-Sar5-ACIEEGQYCYRDMYMCA

BCY634

43

[Ac]ACIEEGQYCYRDMYIVICA-Sar6-K(Fl)

BCY636

44

ACIEEGQYCYADPYIVICA-Sar6-K(Fl)

BCY635

45

[B-Ala]-Sar5-ACIEEGQYCYADPYWICA

BCY638

46

ACIEEGQYCYADPYYCASar6-K

BCY637

47

[B-Ala]-Sar5-ACIEEGQYCYADPYYCA

BCY639

48

ACIEEGQYCYSDPYYCA-Sar6-K

BCY640

49

ACIEEGQYCFADPYMCA-Sar6-K

BCY641

50

G-Sar5-ACIEEGQYCFADPYMCA

BCY7239

52

Ac-CIK(Peg12)EGQYCFADPYMC

BCY7240

53

Ac-CIEK(Peg12)GQYCFADPYMC

BCY7242

55

Ac-CIEEGK(Peg12)YCFADPYMC

BCY7244

57

Ac-CIEEGQYCK(Peg12)ADPYMC

BCY7245

58

Ac-CIEEGQYCFK(Peg12)DPYMC

BCY7247

60

Ac-CIEEGQYCFADK(Peg12)YMC

BCY7248

61

Ac-CIEEGQYCFADPK(Peg12)MC

BCY7249

62

Ac-CIEEGQYCFADPYK(Peg12)C

BCY7416

63

[Ac]IEE[dK(PEG12Fl)]QYCFADPY[Nle]C

BCY7519

64

ACIEEGQYCFADPY[Nle]CA

BCY7520

65

[Peg12]-ACIEEGQYCFADPY[Nle]CA

BCY642

66

ACIEEGQYCYADHQLCA-Sar6-K

BCY643

67

ACIEEGQYCHADPYYCA-Sar6-K

BCY644

68

ACIEEGQYCHADPYFCA-Sar6-K

BCY645

69

ACIEEGQYCYADHYMCA-Sar6-K

BCY646

70

ACIEEGQYCYADPYLCA-Sar6-K

BCY647

71

ACIEEGQYCYADPYLCSVG-Sar6-K

BCY648

72

(Fl)G-Sar5-ACIEEGQYCYADPYLCSVG

BCY649

73

ACIEEGQYCYSDPYLCA-Sar6-K

BCY650

74

ACIEEGQYCFADPYLCA-Sar6-K

BCY652

75

ACIEEGQYCHADPYIVICA-Sar6-K

BCY653

76

ACIEEGQYCHADPQMCA-Sar6-K

BCY655

77

ACDIGPPYCYRDMYIVICA-Sar6-K

BCY656

78

ADIGPPYCYADPYIVICA-Sar6-K

BCY7251

79

ACLDPGPFCFADPYIVICA-Sar6-K

BCY7253

80

ACLDEGPYCFADPYFCA-Sar6-K

BCY7255

81

ACINEGPYCFADPYIVICA-Sar6-K

BCY7257

82

ACIEQGPFCFADPYIVICA-Sar6-K

BCY7259

83

ACVEEGPFCFADPYYCA-Sar6-K

BCY7261

84

ACLDEGPFCFSDPYIVICA-Sar6-K

BCY657

85

[B-Ala]-Sar5-ACDEWGLFCIPHSDCA

BCY659

86

ACDEWGLYCFAHPDCA-Sar6-K

BCY7119

87

ACLDPGPYCYADPYIVICTFH-Sar6-K

BCY660

88

ACIEPGPFCYADPYMCNRV-Sar6-K

BCY661

89

G-Sar5-ACIEPGPFCYADPYMCNRV

BCY7120

90

ACLEPGPYCYADPYIVICTHL-Sar6-K

BCY7122

91

ACLPPGPYCFPDPYFCA-Sar6-K

BCY7151

92

[PEG3]-ACIEEGQYCFADPY[Nle]CA

BCY7152

115

[PEG3]-ACLEEGQYCFADPY[Nle]CA

BCY7153

116

[PEG3]-AC[Nle]EEGQYCFADPY[Nle]CA

BCY7154

117

[PEG3]-AC-Chg-EEGQYCFADPY[Nle]CA

BCY7155

118

[PEG3]-AC-Cha-EEGQYCFADPY[Nle]CA

BCY7156

119

[PEG3]-ACIPEGQYCFADPY[Nle]CA

BCY7157

120

[PEG3]-ACIDEGQYCFADPY[Nle]CA

BCY7158

121

[PEG3]-ACI-Aad-EGQYCFADPY[Nle]CA

BCY7159

122

[PEG3]-ACI-Api-EGQYCFADPY[Nle]CA

BCY7160

123

[PEG3]-ACIEPGQYCFADPY[Nle]CA

BCY7161

124

[PEG3]-ACIEDGQYCFADPY[Nle]CA

BCY7162

125

[PEG3]-ACIE-Aad-GQYCFADPY[Nle]CA

BCY7163

126

[PEG3]-ACIE-Api-GQYCFADPY[Nle]CA

BCY7164

127

[PEG3]-ACIEE-Sar-QYCFADPY[Nle]CA

BCY7165

128

[PEG3]-ACIEE-DLys-QYCFADPY[Nle]CA

BCY7166

129

[PEG3]-ACIEE-DPhe-QYCFADPY[Nle]CA

BCY7167

130

[PEG3]-ACIEE-DGlu-QYCFADPY[Nle]CA

BCY7168

131

[PEG3]-ACIEE-DGln-QYCFADPY[Nle]CA

BCY7169

132

[PEG3]-ACIEE-DLeu-QYCFADPY[Nle]CA

BCY7170

133

[PEG3]-ACIEE-DSer-QYCFADPY[Nle]CA

BCY7172

134

[PEG3]-ACIEE-MeDala-QYCFADPY[Nle]CA

BCY7173

135

[PEG3]-ACIEE-Aib-QYCFADPY[Nle]CA

BCY7174

136

[PEG3]-ACIEEGPYCFADPY[Nle]CA

BCY7175

137

[PEG3]-ACIEEGQFCFADPY[Nle]CA

BCY7176

138

[PEG3]-ACIEEGQ-2MeF-CFADPY[Nle]CA

BCY7177

139

[PEG3]-ACIEEGQ-3MeF-CFADPY[Nle]CA

BCY7178

140

[PEG3]-ACIEEGQ-4MeF-CFADPY[Nle]CA

BCY7179

141

[PEG3]-ACIEEGQ-4FF-CFADPY[Nle]CA

BCY7180

142

[PEG3]-ACIEEGQ-3FF-CFADPY[Nle]CA

BCY7181

143

[PEG3]-ACIEEGQYC-2MeF-ADPY[Nle]CA

BCY7182

144

[PEG3]-ACIEEGQYC-3MeF-ADPY[Nle]CA

BCY7183

145

[PEG3]-ACIEEGQYC-4MeF-ADPY[Nle]CA

BCY7184

146

[PEG3]-ACIEEGQYC-PheG-ADPY[Nle]CA

BCY7185

147

[PEG3]-ACIEEGQYC-4FF-ADPY[Nle]CA

BCY7186

148

[PEG3]-ACIEEGQYCFGDPY[Nle]CA

BCY7187

149

[PEG3]-ACIEEGQYCFSDPY[Nle]CA

BCY7188

150

[PEG3]-ACIEEGQYCFPDPY[Nle]CA

BCY7189

151

[PEG3]-ACIEEGQYCFANPY[Nle]CA

BCY7190

152

[PEG3]-ACIEEGQYCFAD-Pip-Y[Nle]CA

BCY7191

153

[PEG3]-ACIEEGQYCFAD-MeAla-Y[Nle]CA

BCY7192

154

[PEG3]-ACIEEGQYCFAD-Sar-Y[Nle]CA

BCY7193

155

[PEG3]-ACIEEGQYCFAD-Aib-Y[Nle]CA

BCY7195

156

[PEG3]AC[tBuAla]EEGQYCFADPY[Nle]CA

BCY7196

157

[PEG3]AC[HLeu]EEGQYCFADPY[Nle]CA

BCY7197

158

[PEG3]ACIEEGQ[2FPhe]CFADPY[Nle]CA

BCY7198

159

[PEG3]ACIEEGQYC[2FPhe]ADPY[Nle]CA

BCY7199

160

[PEG3]ACIEEGQYCF[CF3G]DPY[Nle]CA

BCY7200

161

[PEG3]ACIEEGQYCFADP[pCoPhe][Nle]CA

BCY7201

162

[PEG3]ACIEEGQYCFADP[pCaPhe][Nle]CA

BCY7202

163

[PEG3]ACIEEGQYCFADPQ[Nle]CA

BCY7205

164

[PEG3]ACIEEGQYCFADP[2MePhe][Nle]CA

BCY7206

165

[PEG3]ACIEEGQYCFADP[3MePhe][Nle]CA

BCY7207

166

[PEG3]ACIEEGQYCFADP[4MePhe][Nle]CA

BCY7208

167

[PEG3]ACIEEGQYCFADP[Cit][Nle]CA

BCY7209

168

[PEG3]ACIEEGQYCFADP[4FPhe][Nle]CA

BCY7210

169

[PEG3]ACIEEGQYCFADPY[tBuAla]CA

BCY7211

170

[PEG3]ACIEEGQYCFADPY[HLeu]CA

BCY7212

171

[PEG3]ACIEEGQYCFADPYICA

BCY7213

172

[PEG3]ACIEEGQYCFADPY[Cha]CA

BCY7214

173

[PEG3]ACIEEGQYCFADPYFCA

BCY7215

174

[PEG3]ACIEEGQYCFADPY[2MePhe]CA

BCY7216

175

[PEG3]ACIEEGQYCFADPY[3MePhe]CA

BCY7217

176

[PEG3]ACIEEGQYCFADPY[4MePhe]CA

BCY7218

177

[PEG3]A[Pen]IEEGQYCFADPY[Nle]CA

BCY7219

178

[PEG3]ACIEEGQY[Pen]FADPY[Nle]CA

BCY7220

179

[PEG3]ACIEEGQYCFADPY[Nle][Pen]A

BCY7221

180

[PEG3]A[HCys]IEEGQYCFADPY[Nle]CA

BCY7222

181

[PEG3]ACIEEGQY[HCys]FADPY[Nle]CA

BCY7223

182

[PEG3]ACIEEGQYCFADPY[Nle][HCys]A

BCY7224

183

[PEG3]ACIEEGQYC[3FPhe]ADPY[Nle]CA

BCY7306

184

[PEG3]-ACI[TetraZ]EGQYCFADPY[Nle]CA

BCY7308

185

[PEG3]-ACIEEGQYCFA[TetraZ]PY[Nle]CA

BCY7309

186

[PEG3]-ACIEEGQYCFADP[HGln][Nle]CA

BCY7310

187

[PEG3]-AC[Ahp]EEGQYCFADPY[Nle]CA

BCY7311

188

[PEG3]-ACIEEGQYCFADPY[Ahp]CA

BCY592

189

ACIEEGQYCFADPYIVICA

BCY589

190

HEHCIEEGQYCYADPYIVICA

BCY599

191

ACIEEGQYCFADPYLCA

BCY631

192

ACLPPGPYCFPDPYFCA

BCY592

189

ACIEEGQYCFADPYIVICA

BCY593

193

[Ac]CIEEGQYCFADPYMC

BCY3814

31

ACIEEGQYCFADPY(Nle)CA

BCY7527

194

[Ac]CIEEGQYCFADPY[Nle]C[Dap]

BCY7768

195

[PEG3]ACIPE[dF]QYCFADPY[Nle]CA

BCY7770

196

[PEG3]ACIPE[dF]PYCFADPY[Nle]CA

BCY7772

197

[PEG3]ACIEE[dF]PYCFADPY[Nle]CA

BCY7773

198

PEG3]ACIPEGPYCFADPY[Nle]CA

BCY7774

199

[PEG3]AC[tBuAla]PE[dF]P[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY7775

200

[PEG3]AC[tBuAla]PE[dF]Q[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY7776

201

[PEG3]AC[tBuAla]EE[dF]P[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY7777

202

[PEG3]AC[tBuAla]EE[dF]Q[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY7796

203

[PEG3]ACI[HyP]EGQYCFADPY[Nle]CA

BCY7798

204

[PEG3]ACIEE[dW]QYCFADPY[Nle]CA

BCY7799

205

[PEG3]ACIEEG[Aze]YCFADPY[Nle]CA

BCY7800

206

[PEG3]ACIEEG[Pip]YCFADPY[Nle]CA

BCY7801

207

[PEG3]ACIEEGQ[2Nal]CFADPY[Nle]CA

BCY7802

208

[PEG3]ACIEEGQ[4MeoPhe]CFADPY[Nle]CA

BCY7803

209

[PEG3]ACIEEGQYCYADPY[Nle]CA

BCY7804

210

[PEG3]ACIEEGQYCFAD[Aze]Y[Nle]CA

BCY7806

211

[PEG3]ACIEEGQYCFADPY[Hse(Me)]CA

BCY7923

212

[Ac]AC[NMeIle]EEGQYCFADPY[Nle]CA

BCY7924

213

[Ac]ACI[Aze]EGQYCFADPY[Nle]CA

BCY7925

214

[Ac]ACI[Pip]EGQYCFADPY[Nle]CA

BCY7926

215

[Ac]ACI[NMeGlu]EGQYCFADPY[Nle]CA

BCY7927

216

[Ac]ACIE[NMeGlu]GQYCFADPY[Nle]CA

BCY7928

217

[Ac]ACIEE[dD]QYCFADPY[Nle]CA

BCY7929

218

[Ac]ACIEEG[NMeAla]YCFADPY[Nle]CA

BCY7930

219

[Ac]ACIEEGQ[NMeTyr]CFADPY[Nle]CA

BCY7931

220

[Ac]ACIEEGQ[HPhe]CFADPY[Nle]CA

BCY7933

221

[Ac]ACIEEGQ[2Pal]CFADPY[Nle]CA

BCY7934

222

[Ac]ACIEEGQ[3Pal]CFADPY[Nle]CA

BCY7936

223

[Ac]ACIEEGQ[44BPA]CFADPY[Nle]CA

BCY7937

224

[Ac]ACIEEGQYC[HPhe]ADPY[Nle]CA

BCY7939

225

[Ac]ACIEEGQYC[2Pal]ADPY[Nle]CA

BCY7940

226

[Ac]ACIEEGQYC[3Pal]ADPY[Nle]CA

BCY7941

227

[Ac]ACIEEGQYC[4Pal]ADPY[Nle]CA

BCY7942

228

[Ac]ACIEEGQYC[44BPA]ADPY[Nle]CA

BCY7943

229

[Ac]ACIEEGQYC[1Nal]ADPY[Nle]CA

BCY7944

230

[Ac]ACIEEGQYC[4tBuPhe]ADPY[Nle]CA

BCY7945

231

[Ac]ACIEEGQYCF[NMeAla]DPY[Nle]CA

BCY7950

232

[Ac]ACIEEG[55DMp]YCFADPY[Nle]CA

BCY7953

233

[Ac]ACIEEGQYCFAD[HyP]Y[Nle]CA

BCY7954

234

[Ac]ACIEEG[Oic]YCFADPY[Nle]CA

BCY7955

235

[Ac]ACIEEGQYCFAD[Oic]Y[Nle]CA

BCY7956

236

[Ac]ACI[Oic]EGQYCFADPY[Nle]CA

BCY7957

237

[Ac]ACIEEGQYCFAD[Oxa]Y[Nle]CA

BCY7958

238

[Ac]ACI[Oxa]EGQYCFADPY[Nle]CA

BCY7959

239

[Ac]ACIEEG[Oxa]YCFADPY[Nle]CA

BCY7960

240

[Ac]ACIPEGPYCFADPY[Nle]CA

BCY7952

241

[Ac]ACIEEG[HyP]YCFADPY[Nle]CA

BCY7961

242

[Ac]ACIPE[dA]PYCFADPY[Nle]CA

BCY7965

243

[Ac]AC[tBuAla]PE[dA]PYCFADPY[Nle]CA

BCY8217

244

ACIEEGQYCF[dA]DPY[Nle]CA

BCY8656

245

[Ac]AC[tBuAla]EEGQYCFADPY[Nle]CA

BCY8657

246

[Ac]AC[Chg]EEGQYCFADPY[Nle]CA

BCY8658

247

[Ac]AC[AC5C]EEGQYCFADPY[Nle]CA

BCY8659

248

[Ac]ACIPEGQYCFADPY[Nle]CA

BCY8660

249

[Ac]ACIQEGQYCFADPY[Nle]CA

BCY8661

250

[Ac]ACIEPGQYCFADPY[Nle]CA

BCY8662

251

[Ac]ACIEQGQYCFADPY[Nle]CA

BCY8663

252

[Ac]ACIEE[df]QYCFADPY[Nle]CA

BCY8664

253

[Ac]ACIEE[dA]QYCFADPY[Nle]CA

BCY8665

254

[Ac]ACIEE[AC5C]QYCFADPY[Nle]CA

BCY8667

255

[Ac]ACIEEGAYCFADPY[Nle]CA

BCY8668

256

[Ac]ACIEEG[Aib]YCFADPY[Nle]CA

BCY8669

257

[Ac]ACIEEG[AC5C]YCFADPY[Nle]CA

BCY8670

258

[Ac]ACIEEGQ[4MePhe]CFADPY[Nle]CA

BCY8671

259

[Ac]ACIEEGQ[1Nal]CFADPY[Nle]CA

BCY8673

260

[Ac]ACIEEGQYC[2Nal]ADPY[Nle]CA

BCY8674

261

[Ac]ACIEEGQYC[NO2Phe]ADPY[Nle]CA

BCY8675

262

[Ac]ACIEEGQYC[4BrPhe]ADPY[Nle]CA

BCY8676

263

[Ac]ACIEEGQYCF[Abu]DPY[Nle]CA

BCY8677

264

[Ac]ACIEEGQYCFADPY[Ahp]CA

BCY9273

265

[Ac]ACIEEGQYCFADPYMCA

wherein C i , C ii and C iii represent first, second and third cysteine residues, respectively, Ac represents an N-terminal acetyl group and Dap represents diaminopropionic acid or a pharmaceutically acceptable salt thereof.

7. A peptide ligand specific for CD137 comprising a polypeptide comprising at least three cysteine residues, separated by two loop sequences, and a molecular scaffold which forms covalent bonds with the cysteine residues of the polypeptide such that two polypeptide loops are formed on the molecular scaffold, wherein the peptide ligand comprises an amino acid sequence which is:

(SEQ ID NO: 266)

C i -X 5 -X 6 -X 7 -X 8 -X 9 -X 10 -C ii -X 11 -X 12 -D-X 13 -X 14 -X 15 -C iii ;

wherein C i , C ii and C iii represent first, second and third cysteine residues, respectively;

X 5 represents lie, tBuAla or Chg;

X 6 represents Glu, Pro, Asp, Lys, Aad, HyP or Oxa;

X 7 represents Glu, Lys or Aad;

X 8 represents Gly, D-Lys, D-Ala, L-Ala, D-Phe, D-Glu, D-Gln, D-Leu, D-Ser or D-Trp;

X 9 represents Gin, Lys, Ala, Pro, 5,5-dmP, Oic, Oxa, HyP, Aib or Ac5c;

X 10 represents Tyr, Phe, 3MePhe, 4MePhe, 4FPhe, 2Nal, 4MeOPhe or 4,4-BPA;

X 11 represents Phe, Lys, 4MePhe, 2FPhe, 4FPhe, 4Pal, 4,4-BPA, 4tBuPhe, NO2Phe or 4BrPhe;

X 12 represents Ala or Lys;

X 13 represents Pro or Lys;

X 14 represents Tyr or Lys; and

X 15 represents Met, Lys, Nle, HLeu or Ahp.

8. The peptide ligand as defined in claim 7 , wherein the peptide ligand of SEQ ID NO: 266 is selected from the C i to C iii sequences of the following peptides or the full sequences of the following peptides:

SEQ ID

Peptide Number

NO:

Sequence

BCY7239

52

Ac-CIK(Peg12)EGQYCFADPYMC

BCY7240

53

Ac-CIEK(Peg12)GQYCFADPYMC

BCY7242

55

Ac-CIEEGK(Peg12)YCFADPYMC

BCY7244

57

Ac-CIEEGQYCK(Peg12)ADPYMC

BCY7245

58

Ac-CIEEGQYCFK(Peg12)DPYMC

BCY7247

60

Ac-CIEEGQYCFADK(Peg12)YMC

BCY7248

61

Ac-CIEEGQYCFADPK(Peg12)MC

BCY7249

62

Ac-CIEEGQYCFADPYK(Peg12)C

BCY7416

63

[Ac]CIEE[dK(PEG12Fl)]QYCFADPY[Nle]C

BCY7287

97

[PEG3]-ACIEEGAYCFADPY(Nle)CA

BCY7297

106

[PEG3]-ACIEEaQYCFADPY(Nle)CA

BCY7154

117

[PEG3]-AC-Chg-EEGQYCFADPY[Nle]CA

BCY7156

119

[PEG3]-ACIPEGQYCFADPY[Nle]CA

BCY7157

120

[PEG3]-ACIDEGQYCFADPY[Nle]CA

BCY7158

121

[PEG3]-ACI-Aad-EGQYCFADPY[Nle]CA

BCY7162

125

[PEG3]-ACIE-Aad-GQYCFADPY[Nle]CA

BCY7165

128

[PEG3]-ACIEE-DLys-QYCFADPY[Nle]CA

BCY7166

129

[PEG3]-ACIEE-DPhe-QYCFADPY[Nle]CA

BCY7167

130

[PEG3]-ACIEE-DGlu-QYCFADPY[Nle]CA

BCY7168

131

[PEG3]-ACIEE-DG1n-QYCFADPY[Nle]CA

BCY7169

132

[PEG3]-ACIEE-DLeu-QYCFADPY[Nle]CA

BCY7170

133

[PEG3]-ACIEE-DSer-QYCFADPY[Nle]CA

BCY7174

136

[PEG3]-ACIEEGPYCFADPY[Nle]CA

BCY7175

137

[PEG3]-ACIEEGQFCFADPY[Nle]CA

BCY7177

139

[PEG3]-ACIEEGQ-3MeF-CFADPY[Nle]CA

BCY7178

140

[PEG3]-ACIEEGQ-4MeF-CFADPY[Nle]CA

BCY7179

141

[PEG3]-ACIEEGQ-4FF-CFADPY[Nle]CA

BCY7183

145

[PEG3]-ACIEEGQYC-4MeF-ADPY[Nle]CA

BCY7185

147

[PEG3]-ACIEEGQYC-4FF-ADPY[Nle]CA

BCY7195

156

[PEG3]AC[tBuAla]EEGQYCFADPY[Nle]CA

BCY7198

159

[PEG3]ACIEEGQYC[2FPhe]ADPY[Nle]CA

BCY7211

170

[PEG3]ACIEEGQYCFADPY[HLeu]CA

BCY7311

188

[PEG3]-ACIEEGQYCFADPY[Ahp]CA

BCY7768

195

[PEG3]ACIPE[dF]QYCFADPY[Nle]CA

BCY7770

196

[PEG3]ACIPE[dF]PYCFADPY[Nle]CA

BCY7772

197

[PEG3]ACIEE[dF]PYCFADPY[Nle]CA

BCY7773

198

PEG3]ACIPEGPYCFADPY[Nle]CA

BCY7774

199

PEG3]AC[tBuAla]PE[dF]P[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY7775

200

[PEG3]AC[tBuAla]PE[dF]Q[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY7776

201

[PEG3]AC[tBuAla]EE[dF]P[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY7796

203

[PEG3]ACI[HyP]EGQYCFADPY[Nle]CA

BCY7798

204

[PEG3]ACIEE[dW]QYCFADPY[Nle]CA

BCY7801

207

PEG3]ACIEEGQ[2Nal]CFADPY[Nle]CA

BCY7802

208

PEG3]ACIEEGQ[4MeoPhe]CFADPY[Nle]CA

BCY7936

223

[Ac]ACIEEGQ[44BPA]CFADPY[Nle]CA

BCY7941

227

[Ac]ACIEEGQYC[4Pal]ADPY[Nle]CA

BCY7942

228

[Ac]ACIEEGQYC[44BPA]ADPY[Nle]CA

BCY7944

230

Ac]ACIEEGQYC[4tBuPhe]ADPY[Nle]CA

BCY7950

232

[Ac]ACIEEG[55DMP]YCFADPY[Nle]CA

BCY7954

234

[Ac]ACIEEG[Oic]YCFADPY[Nle]CA

BCY7958

238

[Ac]ACI[Oxa]EGQYCFADPY[Nle]CA

BCY7959

239

[Ac]ACIEEG[Oxa]YCFADPY[Nle]CA

BCY7960

240

[Ac]ACIPEGPYCFADPY[Nle]CA

BCY7952

241

[Ac]ACIEEG[HyP]YCFADPY[Nle]CA

BCY7961

242

[Ac]ACIPE[dA]PYCFADPY[Nle]CA

BCY8656

245

[Ac]AC[tBuAla]EEGQYCFADPY[Nle]CA

BCY8659

248

[Ac]ACIPEGQYCFADPY[Nle]CA

BCY8663

252

[Ac]ACIEE[df]QYCFADPY[Nle]CA

BCY8668

256

[Ac]ACIEEG[Aib]YCFADPY[Nle]CA

BCY8669

257

[Ac]ACIEEG[AC5C]YCFADPY[Nle]CA

BCY8674

261

[Ac]ACIEEGQYC[NO2Phe]ADPY[Nle]CA

BCY8675

262

[Ac]ACIEEGQYC[4BrPhe]ADPY[Nle]CA

BCY9273

265

[Ac]ACIEEGQYCFADPYWICA

BCY3814

31

ACIEEGQYCFADPY(Nle)CA

BCY7527

194

[Ac]ClEEGQYCFADPY[Nle]C[Dap]

BCY7965

243

[Ac]AC[tBuAla]PE[dA]PYCFADPY[Nle]CA.

9. The peptide ligand as defined in claim 7 , which comprises three cysteine residues separated by two loop sequences both of which consist of 6 amino acids, and said peptide ligand comprises an amino acid sequence selected from:

(SEQ ID NO: 267)

C i -X 5 -X 6 -X 7 -X 8 -X 9 -X 10 -C ii -X 11 -A-D-P-Y-X 15 -C iii ;

wherein C i , C ii and C iii represent first, second and third cysteine residues, respectively;

X 5 represents lie or tBuAla;

X 6 represents Lys, Glu or Pro;

X 7 represents Glu or D-Lys;

X 8 represents Gly, D-Lys, D-Phe or D-Ala;

X 9 represents Gin, Lys or Pro;

X 10 represents Tyr or 4MePhe;

X 11 represents Phe or 4FPhe; and

X 15 represents Met or Nle.

10. The peptide ligand as defined in claim 9 , wherein the peptide ligand of SEQ ID NO: 267 is selected from the C i to C iii sequences of the following peptides or the full sequences of the following peptides:

Peptide Number

SEQ ID NO:

Sequence

BCY7239

52

Ac-CIK(Peg12)EGQYCFADPYMC

BCY7240

53

Ac-CIEK(Peg12)GQYCFADPYMC

BCY7242

55

Ac-CIEEGK(Peg12)YCFADPYMC

BCY7416

63

[Ac]CIEE[dK(PEG12Fl)]QYCFADPY[Nle]C

BCY7156

119

[PEG3]-ACIPEGQYCFADPY[Nle]CA

BCY7166

129

[PEG3]-ACIEE-DPhe-QYCFADPY[Nle]CA

BCY7174

136

[PEG3]-ACIEEGPYCFADPY[Nle]CA

BCY7774

199

PEG3]AC[tBuAla]PE[dF]P[4MePhe]C[4FPhe]ADPY[Nle]CA

BCY9273

265

[Ac]ACIEEGQYCFADPYMCA

BCY3814

31

ACIEEGQYCFADPY(Nle)CA

BCY7527

194

[Ac]CIEEGQYCFADPY[Nle]C[Dap]

BCY7965

243

[Ac]AC[tBuAla]PE[dA]PYCFADPY[Nle]CA.

11. The peptide ligand as defined in claim 1 , wherein the molecular scaffold is 1,1′,1″-(1,3,5-triazinane-1,3,5-triyl)triprop-2-en-1-one (TATA).

12. The peptide ligand as defined in claim 1 , wherein the pharmaceutically acceptable salt is selected from the free acid or the sodium, potassium, calcium, or ammonium salt.

13. The peptide ligand as defined in claim 1 , wherein the CD137 is human CD137.

14. A drug conjugate comprising the peptide ligand as defined in claim 1 , conjugated to one or more effector and/or functional groups.

15. A drug conjugate comprising the peptide ligand as defined in claim 1 , conjugated to one or more cytotoxic agents.

16. A pharmaceutical composition which comprises the peptide ligand of claim 1 , in combination with one or more pharmaceutically acceptable excipients.

17. The peptide ligand as defined in claim 6 , wherein the molecular scaffold is 1,1′,1″-(1,3,5-triazinane-1,3,5-triyl)triprop-2-en-1-one (TATA).

18. The peptide ligand as defined in claim 7 , wherein the molecular scaffold is 1,1′,1″-(1,3,5-triazinane-1,3,5-triyl)triprop-2-en-1-one (TATA).

19. A drug conjugate comprising the peptide ligand as defined in claim 6 , conjugated to one or more effector and/or functional groups.

20. A drug conjugate comprising the peptide ligand as defined in claim 7 , conjugated to one or more effector and/or functional groups.

21. A pharmaceutical composition which comprises the peptide ligand of claim 6 , in combination with one or more pharmaceutically acceptable excipients.

22. A pharmaceutical composition which comprises the peptide ligand of claim 7 , in combination with one or more pharmaceutically acceptable excipients.

23. The drug conjugate of claim 14 , wherein the peptide ligand is as defined in claim 2 .

24. The drug conjugate of claim 20 , wherein the peptide ligand is as defined in claim 8 .

25. The drug conjugate of claim 20 , wherein the peptide ligand is as defined in claim 10 .

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 14, 2020
From: CHEN, LIUHONG; LANI, RACHID; MCDONNELL, KEVIN; MUDD, GEMMA; PARK, PETER
To: BICYCLETX LIMITED
Reel/Frame 052659/0298 →
Priority Claims (3)
GB 1712589 · Aug 4, 2017 · national
GB 1802934 · Feb 23, 2018 · national
GB 1805850 · Apr 9, 2018 · national
Continuity (1)
Related Publication 20200255477A1 · Aug 13, 2020
Cited By (15)
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