System and method for phase unwrapping for automatic cine DENSE strain analysis using phase predictions and region growing
In one aspect the disclosed technology relates to embodiments of a method (e.g., for automatic cine DENSE strain analysis) which includes acquiring magnetic resonance data associated with a physiological activity in an area of interest of a subject where the acquired magnetic resonance data includes one or more phase-encoded data sets. The method also includes determining, from at least the one or more phase-encoded data sets, a data set corresponding to the physiological activity in the area of interest where the reconstruction comprises performing phase unwrapping of the phase-encoded data set using region growing along multiple pathways based on phase predictions.
1. A method comprising:
acquiring magnetic resonance data associated with a physiological activity in an area of interest of a subject, wherein the acquired magnetic resonance data includes one or more phase-encoded data sets associated with a displacement encoding with stimulated echo (DENSE) measurement; and
determining, from at least the one or more phase-encoded data sets, a data set corresponding to the physiological activity in the area of interest, wherein the determination comprises performing phase unwrapping of the phase-encoded data set using phase predictions and region growing by:
identifying, by a processor executing an algorithm, an initial region where phase wrapping has not occurred;
iteratively determining, by the processor, a perimeter of phase-wrapped pixels; and
adding, by the processor, one or more pixels of candidate growth pixels evaluated via spatiotemporal linear prediction analysis determined at least from the one or more pixels, wherein a portion of the one or more pixels is added based on a reliability threshold established from the spatiotemporal linear prediction analysis.
2. The method of claim 1 , wherein each spatiotemporal linear prediction analysis comprises at least an assessment of predicted phase and an assessment of variation in predictions, among i) a pixel of the one or more pixels and ii) one or more neighboring pixels along an assessed pathway.
3. The method of claim 2 , wherein multiple spatiotemporal prediction pathways are used for each perimeter pixel undergoing evaluation, and wherein the assessment of variation is among the predictions from the different pathway.
4. The method of claim 1 , wherein the added pixels include regions with reliable predictions and excludes regions with unreliable predictions.
5. The method of claim 4 , wherein the regions with reliable predictions are associated with identification of myocardial tissue.
6. The method of claim 4 , wherein the regions with unreliable predictions are associated with noise.
7. The method of claim 1 , wherein the phase-encoded data set comprises data from a displacement encoding with stimulated echo (DENSE) measurement.
8. The method of claim 1 , wherein the phase-encoded data set comprises two-dimensional data, the evaluated one or more pixels of candidate phase-wrapped pixels being evaluated in two or more encoding directions.
9. The method of claim 8 , wherein the two or more encoding directions include a first direction and a second direction, wherein the first direction is orthogonal to the second direction.
10. The method of claim 8 , wherein the two or more encoding directions are applied simultaneously at each given region growth iteration.
11. The method of claim 1 , wherein the determined data set includes displacement-encoded information.
12. The method of claim 1 , wherein the determined data set includes one or more reconstructed images of the physiological activity in the area of interest.
13. The method of claim 1 , wherein the method is used to fully automate in-line strain mapping for DENSE measurements.
14. The method of claim 1 , wherein the step of identifying the initial region comprises applying a principal component analysis to one or more DENSE images.
15. The method of claim 1 , wherein the one or more pixels of candidate growth pixels are located adjacent to the perimeter of phase-wrapped pixels.
16. The method of claim 1 , wherein the magnetic resonance data associated with the physiological activity in the area of interest includes MRI acquisition of the myocardium.
17. The method of claim 1 , wherein the magnetic resonance data associated with the physiological activity in the area of interest is acquired from a region selected from the group consisting of the heart, skeletal muscle, brain, head, neck, mouth, spine, chest, lung, arm, hand, knee, and foot.
18. A system comprising:
at least one processor;
at least one memory device coupled to the processor and storing computer-readable instructions which, when executed by the at least one processor, cause the system to perform functions that comprise:
acquiring magnetic resonance data associated with a physiological activity in an area of interest of a subject, wherein the acquired magnetic resonance data includes one or more phase-encoded data sets associated with a displacement encoding with stimulated echo (DENSE) measurement; and
determining, from at least the one or more phase-encoded data sets, a data set corresponding to the physiological activity in the area of interest, wherein the reconstruction comprises performing phase unwrapping of the phase-encoded data set using phase predictions and region growing by:
identifying an initial region where phase wrapping has not occurred;
iteratively determining a perimeter of phase-wrapped pixels; and
adding one or more pixels of candidate growth pixels evaluated via spatiotemporal linear prediction analysis determined at least from the one or more pixels, wherein a portion of the one or more pixels is added based on a reliability threshold established from the spatiotemporal linear prediction analysis.
19. A non-transitory computer-readable medium having stored instructions that, when executed by one or more processors, cause a computing device to perform functions that comprise:
acquiring magnetic resonance data associated with a physiological activity in an area of interest of a subject, wherein the acquired magnetic resonance data includes one or more phase-encoded data sets associated with a displacement encoding with stimulated echo (DENSE) measurement; and
determining, from at least the one or more phase-encoded data sets, a data set corresponding to the physiological activity in the area of interest, wherein the reconstruction comprises performing phase unwrapping of the phase-encoded data set using phase predictions and region growing by:
identifying an initial region where phase wrapping has not occurred;
iteratively determining a perimeter of phase-wrapped pixels; and
adding one or more pixels of candidate growth pixels evaluated via spatiotemporal linear prediction analysis determined at least from the one or more pixels, wherein a portion of the one or more pixels is added based on a reliability threshold established from the spatiotemporal linear prediction analysis.