CD3-targeting and DLL3-targeting multispecific antigen-binding molecules and uses thereof
The disclosure provides multispecific antigen-binding molecules that comprise a first antigen-binding moiety and a second antigen-binding moiety, each of which is capable of binding to CD3 and CD137, but does not bind to CD3 and CD137 at the same time; and a third antigen-binding moiety that is capable of binding to DLL3, preferably human DLL3, which induce T-cell dependent cytotoxity more efficiently whilst circumventing adverse toxicity concerns or side effects that other multispecific antigen-binding molecules may have. The present invention provides multispecific antigen-binding molecules and pharmaceutical compositions that can treat various cancers, especially those associated with DLL3, by comprising the antigen-binding molecule as an active ingredient.
1. A multispecific antigen-binding molecule that comprises:
(a) a first antigen-binding moiety and a second antigen-binding moiety, at least one of which binds to human CD3 and comprises
an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 20, a heavy chain CDR 2 comprising SEQ ID NO: 34, a heavy chain CDR 3 comprising SEQ ID NO: 48, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
and
(b) a third antigen-binding moiety that binds to human Delta-like 3 (DLL3) and comprises an antibody variable region comprising a heavy chain CDR1 comprising SEQ ID NO: 233, a heavy chain CDR 2 comprising SEQ ID NO: 234, a heavy chain CDR 3 comprising SEQ ID NO: 235, a light chain CDR 1 comprising SEQ ID NO: 237, a light chain CDR 2 comprising SEQ ID NO: 238, and a light chain CDR 3 comprising SEQ ID NO: 239.
2. The multispecific antigen-binding molecule of claim 1 , wherein
(i) the first antigen-binding moiety binds to human CD3 and comprises an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 20, a heavy chain CDR 2 comprising SEQ ID NO: 34, a heavy chain CDR 3 comprising SEQ ID NO: 48, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73; and
(ii) the second antigen-binding moiety binds to human CD3 and comprises an antibody variable region selected from the group consisting of (I) to (XIV):
(I) an antibody variable region comprising a heavy chain complementarity determining region (CDR) 1 comprising SEQ ID NO: 17, a heavy chain CDR 2 comprising SEQ ID NO: 31, a heavy chain CDR 3 comprising SEQ ID NO: 45, a light chain CDR 1 comprising SEQ ID NO: 64, a light chain CDR 2 comprising SEQ ID NO: 69, and a light chain CDR 3 comprising SEQ ID NO: 74;
(II) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 18, a heavy chain CDR 2 comprising SEQ ID NO: 32, a heavy chain CDR 3 comprising SEQ ID NO: 46, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
(III) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 19, a heavy chain CDR 2 comprising SEQ ID NO: 33, a heavy chain CDR 3 comprising SEQ ID NO: 47, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
(IV) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 19, a heavy chain CDR 2 comprising SEQ ID NO: 33, a heavy chain CDR 3 comprising SEQ ID NO: 47, a light chain CDR 1 comprising SEQ ID NO: 65, a light chain CDR 2 comprising SEQ ID NO: 70, and a light chain CDR 3 comprising SEQ ID NO: 75;
(V) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 22, a heavy chain CDR 2 comprising SEQ ID NO: 36, a heavy chain CDR 3 comprising SEQ ID NO: 50, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
(VI) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 23, a heavy chain CDR 2 comprising SEQ ID NO: 37, a heavy chain CDR 3 comprising SEQ ID NO: 51, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
(VII) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 23, a heavy chain CDR 2 comprising SEQ ID NO: 37, a heavy chain CDR 3 comprising SEQ ID NO: 51, a light chain CDR 1 comprising SEQ ID NO: 66, a light chain CDR 2 comprising SEQ ID NO: 71, and a light chain CDR 3 comprising SEQ ID NO: 76;
(VIII) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 24, a heavy chain CDR 2 comprising SEQ ID NO: 38, a heavy chain CDR 3 comprising SEQ ID NO: 52, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
(IX) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 25, a heavy chain CDR 2 comprising SEQ ID NO: 39, a heavy chain CDR 3 comprising SEQ ID NO: 53, a light chain CDR 1 comprising SEQ ID NO: 66, a light chain CDR 2 comprising SEQ ID NO: 71, and a light chain CDR 3 comprising SEQ ID NO: 76;
(X) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 26, a heavy chain CDR 2 comprising SEQ ID NO: 40, a heavy chain CDR 3 comprising SEQ ID NO: 54, a light chain CDR 1 comprising SEQ ID NO: 66, a light chain CDR 2 comprising SEQ ID NO: 71, and a light chain CDR 3 comprising SEQ ID NO: 76;
(XI) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 26, a heavy chain CDR 2 comprising SEQ ID NO: 40, a heavy chain CDR 3 comprising SEQ ID NO: 54, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
(XII) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 27, a heavy chain CDR 2 comprising SEQ ID NO: 41, a heavy chain CDR 3 comprising SEQ ID NO: 55, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73;
(XIII) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 28, a heavy chain CDR 2 comprising SEQ ID NO: 42, a heavy chain CDR 3 comprising SEQ ID NO: 56, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73; and
(XIV) an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 82, a heavy chain CDR 2 comprising SEQ ID NO: 83, a heavy chain CDR 3 comprising SEQ ID NO: 84, a light chain CDR 1 comprising SEQ ID NO: 65, a light chain CDR 2 comprising SEQ ID NO: 70, and a light chain CDR 3 comprising SEQ ID NO: 75.
3. A multispecific antigen-binding molecule that comprises:
(a) a first antigen-binding moiety and a second antigen-binding moiety, at least one of which binds to human CD3 and comprises
an antibody variable region comprising a VH comprising SEQ ID NO: 6 and a VL comprising SEQ ID NO: 58;
and
(b) a third antigen-binding moiety comprising an antibody variable region comprising a VH comprising SEQ ID NO: 232 and a VL comprising SEQ ID NO: 236.
4. The multispecific antigen-binding molecule of claim 1 , wherein the antibody variable regions of the first and second antigen binding moieties are identical.
5. The multispecific antigen-binding molecule of claim 3 , wherein the antibody variable regions of the first and second antigen binding moieties are identical.
6. The multispecific antigen-binding molecule of claim 4 , wherein each of the first and second antigen-binding moieties is a Fab that has a cysteine residue at EU numbering position 191, and wherein a disulfide bond links these two cysteine residues.
7. The multispecific antigen-binding molecule of claim 5 , wherein each of the first and second antigen-binding moieties is a Fab that has a cysteine residue at EU numbering position 191, and wherein a disulfide bond links these two cysteine residues.
8. The multispecific antigen-binding molecule of claim 6 , wherein each of the first, second and third antigen binding moieties is in the form of a Fab comprising a VH, a VL, a CH1 domain and a light chain constant (CL) domain, and wherein the C-terminus of the CH1 domain of the third antigen-binding moiety is fused, directly or via a peptide linker, to the N-terminus of the VH of either the first antigen binding moiety or the second antigen binding moiety.
9. The multispecific antigen-binding molecule of claim 7 , wherein each of the first, second and third antigen binding moieties is in the form of a Fab comprising a CH1 domain and a light chain constant (CL) domain, and wherein the C-terminus of the CH1 domain of the third antigen-binding moiety is fused, directly or via a peptide linker, to the N-terminus of the VH of either the first antigen binding moiety or the second antigen binding moiety.
10. The multispecific antigen-binding molecule of claim 8 , wherein the fusion is via a peptide linker that comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 248, SEQ ID NO: 249, and SEQ ID NO: 259.
11. The multispecific antigen-binding molecule of claim 9 , wherein the fusion is via a peptide linker that comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 248, SEQ ID NO: 249, and SEQ ID NO: 259.
12. The multispecific antigen-binding molecule of claim 10 , wherein the third antigen binding moiety is a crossover Fab in which the VH is linked to the CL domain and the VL is linked to the CH1 domain, and wherein each of the first and second antigen binding moieties is a conventional Fab in which the VH is linked to the CH1 domain and the VL is linked to the CL domain.
13. The multispecific antigen-binding molecule of claim 11 , wherein the third antigen binding moiety is a crossover Fab in which the VH is linked to the CL domain and the VL is linked to the CH1 domain, and wherein each of the first and second antigen binding moieties is a conventional Fab in which the VH is linked to the CH1 domain and the VL is linked to the CL domain.
14. The multispecific antigen-binding molecule of claim 12 , wherein, in the CL domain of each of the first and second antigen binding moieties, the amino acids at positions 123 and 124 (Kabat numbering) are arginine and lysine, respectively; and wherein, in the CH1 domain of each of the first and second antigen binding moieties, the amino acid at each of positions 147 and 213 (EU numbering) is glutamic acid.
15. The multispecific antigen-binding molecule of claim 13 , wherein, in the CL domain of each of the first and second antigen binding moieties, the amino acids at positions 123 and 124 (Kabat numbering) are arginine and lysine, respectively; and wherein, in the CH1 domain of each of the first and second antigen binding moieties, the amino acid at each of positions 147 and 213 (EU numbering) is glutamic acid.
16. The multispecific antigen-binding molecule of claim 14 , further comprising an Fc domain.
17. The multispecific antigen-binding molecule of claim 15 , further comprising an Fc domain.
18. The multispecific antigen-binding molecule of claim 16 ,
wherein the Fc domain comprises a first and a second Fc region subunit,
wherein the first Fc-region subunit is selected from the group comprising:
an Fc region polypeptide comprising alanine at each of positions 234 and 235;
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297; and
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297, cysteine at position 354, and tryptophan at position 366;
wherein the second Fc-region subunit is selected from the group comprising:
an Fc region polypeptide comprising alanine at each of positions 234 and 235;
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297; and
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297, cysteine at position 349, serine at position 366, alanine at position 368, and valine at position 407; and
wherein all positions are by EU numbering.
19. The multispecific antigen-binding molecule of claim 17 ,
wherein the Fc domain comprises a first and a second Fc region subunit,
wherein the first Fc-region subunit is selected from the group comprising:
an Fc region polypeptide comprising alanine at each of positions 234 and 235;
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297; and
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297, cysteine at position 354, and tryptophan at position 366;
wherein the second Fc-region subunit is selected from the group comprising:
an Fc region polypeptide comprising alanine at each of positions 234 and 235;
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297; and
an Fc region polypeptide comprising alanine at each of positions 234, 235, and 297, cysteine at position 349, serine at position 366, alanine at position 368, and valine at position 407; and
wherein all positions are by EU numbering.
20. A multispecific antigen-binding molecule that comprises a set of five polypeptide chains, wherein the set is one of (A) to (E) below:
(A) a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 201 (chain 1), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 206 (chain 2), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 208 (chain 3), and two polypeptide chains each comprising the amino acid sequence of SEQ ID NO: 214 (chains 4 and 5);
(B) a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 203 (chain 1), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 206 (chain 2), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 209 (chain 3), and two polypeptide chains each comprising the amino acid sequence of SEQ ID NO: 214 (chains 4 and 5);
(C) a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 204 (chain 1), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 206 (chain 2), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 209 (chain 3), and two polypeptide chains each comprising the amino acid sequence of SEQ ID NO: 214 (chains 4 and 5);
(D) a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 205 (chain 1), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 206 (chain 2), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 209 (chain 3), and two polypeptide chains each comprising the amino acid sequence of SEQ ID NO: 214 (chains 4 and 5); or
(E) a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 216 (chain 1), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 206 (chain 2), a polypeptide chain comprising the amino acid sequence of SEQ ID NO: 229 (chain 3), and two polypeptide chains each comprising the amino acid sequence of SEQ ID NO: 214 (chains 4 and 5).
21. A multispecific antigen-binding molecule that comprises:
(a) a first antigen-binding moiety and a second antigen-binding moiety, each of which binds to human CD3 and comprises an antibody variable region comprising a heavy chain CDR 1 comprising SEQ ID NO: 20, a heavy chain CDR 2 comprising SEQ ID NO: 13, a heavy chain CDR 3 comprising SEQ ID NO: 48, a light chain CDR 1 comprising SEQ ID NO: 63, a light chain CDR 2 comprising SEQ ID NO: 68, and a light chain CDR 3 comprising SEQ ID NO: 73; and
(b) a third antigen-binding moiety that binds to human DLL3 and comprises an antibody variable region comprising a heavy chain CDR1 comprising SEQ ID NO: 233, a heavy chain CDR 2 comprising SEQ ID NO: 234, a heavy chain CDR 3 comprising SEQ ID NO: 235, a light chain CDR 1 comprising SEQ ID NO: 237, a light chain CDR 2 comprising SEQ ID NO: 238, and a light chain CDR 3 comprising SEQ ID NO: 239.
22. The multispecific antigen-binding molecule of claim 21 , wherein the antibody variable region of each of the first and second antigen-binding moieties comprises a VH comprising SEQ ID NO: 6 and a VL comprising SEQ ID NO: 58; and the antibody variable region of the third antigen-binding moiety comprises a VH comprising SEQ ID NO: 232 and a VL comprising SEQ ID NO: 236.
23. The multispecific antigen-binding molecule of claim 22 , wherein each of the first and second antigen-binding moieties is a Fab that has a cysteine residue at EU numbering position 191, and wherein a disulfide bond links these two cysteine residues.
24. The multispecific antigen-binding molecule of claim 23 , wherein each of the first, second and third antigen binding moieties is in the form of a Fab comprising a VH, a VL, a CH1 domain and a CL domain, and wherein the C-terminus of the CH1 domain of the third antigen-binding moiety is fused, directly or via a peptide linker, to the N-terminus of the VH of either the first antigen binding moiety or the second antigen binding moiety.
25. The multispecific antigen-binding molecule of claim 24 , wherein the fusion is via a peptide linker that comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 248, SEQ ID NO: 249, and SEQ ID NO: 259.
26. The multispecific antigen-binding molecule of claim 25 , wherein the third antigen binding moiety is a crossover Fab in which the VH is linked to the CL domain and the VL is linked to the CH1 domain, and wherein each of the first and second antigen binding moieties is a conventional Fab in which the VH is linked to the CH1 domain and the VL is linked to the CL domain.
27. The multispecific antigen-binding molecule of claim 26 , wherein, in the CL domain of each of the first and second antigen binding moieties, the amino acids at Kabat numbering positions 123 and 124 are arginine and lysine, respectively; and wherein, in the CH1 domain of each of the first and second antigen binding moieties, the amino acid at each of EU numbering positions 147 and 213 is glutamic acid.
28. The multispecific antigen-binding molecule of claim 27 , further comprising an Fc domain.