Systems and methods for predicting animal health
Embodiments provide systems and methods for predicting animal health of future generations of animals. Historical health and environmental data are collected and analyzed using machine learning to predict animal health of future generations and to understand which factors of health and environmental data affect animal health. Analysis also provides other insights relative to the field of animal husbandry such as anomaly detection.
1. A computer implemented method, in a data processing system comprising at least one processor and at least one memory, the at least one memory comprising instructions which are executed by the at least one processor to cause the at least one processor to be specifically configured to execute the operations of an intelligent animal health prediction method comprising:
receiving a first data set associated with a first animal's ancestors, wherein the first data set comprises historical health and environmental data;
training a first machine learning model using the first data set to correctly predict the first animal's health according to a first criteria, wherein the first data set is restricted to the historical health and environmental data associated with the first animal's ancestors prior to breeding;
applying the first machine learning model to a second data set comprising historical health and environmental data associated with a breeding pair of animals to determine a predicted health according to the first criteria of a second animal; and
outputting the predicted health.
2. The computer implemented method of claim 1 , wherein the first criteria comprises disease resistance, vigor, life expectancy, yield, fertility, deficiencies, robustness, adaptability, deficiency, efficiency, or growth rate.
3. The computer implemented method of claim 1 , further comprising:
training a second machine learning model to correctly predict the first animal's health according to a second criteria, wherein the data used in training the second machine learning model is restricted to the historical health and environmental data associated with the first animal's ancestors prior to breeding; and
applying the second machine learning model to the second data set comprising historical health and environmental data associated with the breeding pair of animals to predict health according to the second criteria of the second animal.
4. The computer implemented method of claim 3 , further comprising:
stacking the first and second machine learning models.
5. The computer implemented method of claim 3 , wherein the second machine learning model comprises XGBoost or neural network.
6. The computer implemented method of claim 1 , wherein the first machine learning model comprises XGBoost or neural network.
7. The computer implemented method of claim 1 , wherein the first data set is formed into a lineage related mapping.
8. The computer implemented method of claim 1 , further comprising analyzing the first data set to determine a relationship between the historical health and environmental data with the first animal's health according to the first criteria.
9. The computer implemented method of claim 8 , further comprising:
applying a clustering algorithm to the first data set to determine clusters of the first data set;
applying logistic regression within each of the clusters to determine the relationship between the historical health and environmental data with the first criteria; and
outputting from the logistic regression a set of coefficients that represent an impact each data within the first data set has on the first animal's health according to the first criteria.
10. The computer implemented method of claim 1 , further comprising training by generating and selecting features from the first data set.
11. A computer program product for an intelligent animal health predictor, the computer program product comprising a computer readable storage medium having program instructions embodied therewith, the program instructions executable by a processor to cause the processor to:
receive a first data set associated with a first animal's ancestors, wherein the first data set comprises historical health and environmental data;
train a first machine learning model using the first data set to correctly predict the first animal's health according to a first criteria, wherein the first data set is restricted to the historical health and environmental data associated with the first animal's ancestors prior to breeding;
apply the first machine learning model to a second data set comprising historical health and environmental data associated with a breeding pair of animals to determine a predicted health according to the first criteria of a second animal; and
output the predicted health.
12. The computer implemented method of claim 11 , wherein the first criteria comprises disease resistance, vigor, life expectancy, yield, fertility, deficiencies, robustness, adaptability, deficiency, efficiency, or growth rate.
13. The computer implemented method of claim 11 , further comprising:
train a second machine learning model to correctly predict the first animal's health according to a second criteria, wherein the data used in training the second machine learning model is restricted to the historical health and environmental data associated with the first animal's ancestors prior to breeding; and
apply the second machine learning model to the second data set comprising historical health and environmental data associated with the breeding pair of animals to predict health according to the second criteria of the second animal.
14. The computer implemented method of claim 13 , further comprising:
stack the first and second machine learning models.
15. The computer implemented method of claim 13 , wherein the second machine learning model comprises XGBoost or neural network.
16. The computer implemented method of claim 11 , wherein the first machine learning model comprises XGBoost or neural network.
17. The computer implemented method of claim 11 , wherein the first data set is formed into a lineage related mapping.
18. The computer implemented method of claim 11 , further comprising analyze the first data set to determine a relationship between the historical health and environmental data with the first animal's health according to the first criteria.
19. The computer implemented method of claim 18 , further comprising:
apply a clustering algorithm to the first data set to determine clusters of the first data set;
apply logistic regression within each of the clusters to determine the relationship between the historical health and environmental data with the first criteria; and
output from the logistic regression a set of coefficients that represent an impact each data within the first data set has on the first animal's health according to the first criteria.
20. A system comprising:
a memory;
a processor in communication with the memory; and
program instructions executable by the processor via the memory to cause the processor to:
receive a first data set associated with a first animal's ancestors, wherein the first data set comprises historical health and environmental data;
train a first machine learning model using the first data set to correctly predict the first animal's health according to a first criteria, wherein the first data set is restricted to the historical health and environmental data associated with the first animal's ancestors prior to breeding;
apply the first machine learning model to a second data set comprising historical health and environmental data associated with a breeding pair of animals to determine a predicted health according to the first criteria of a second animal; and
output the predicted health.