Plasma autoantibody biomarkers for basal like breast cancer
Cancer patients make antibodies to tumor-derived proteins that are potential biomarkers for early detection. Twenty-eight antigens have been identified as potential biomarkers for the early detection of basal-like breast cancer (Tables 1, 2). Also, a 13-AAb classifier has been developed that differentiate patients with BLBC from healthy controls with 33% sensitivity at 98% specificity (Table 3).
1. A method comprising:
contacting a serum or plasma sample obtained from a human subject to a panel of tumor antigens, wherein said human subject is a female patient less than 50 years old; and
detecting binding of at least four tumor antigens with antibodies in the serum or plasma sample, wherein the at least four tumor antigens are detectably labeled and comprises: P53 (TP53), NYESO1 (CTAG1B), NY ESO2 (CTAG2), and PPHLN1.
2. The method of claim 1 , wherein said detecting comprises utilizing an enzyme-linked immunosorbant assay (ELISA).
3. The method of claim 1 , wherein said at least four tumor antigens comprise PPHLN1, RNF216, P53 (TP53), NYESO1 (CTAG1B) and NY ESO2 (CTAG2).
4. The method of claim 1 , wherein said detecting occurs at a specificity of at least 97.9%.
5. The method of claim 1 , wherein the detectable label is a labeled secondary antibody.
6. A method comprising:
(i) obtaining a serum or plasma sample from a human;
(ii) contacting the serum or plasma sample to a panel of detectably labeled tumor antigens comprising P53 (TP53), NY-ESO1 (CTAG1B), NY-ESO2 (CTAG2), and PPHLN1; and
(iii) analyzing proteins in the contacted sample for the presence of autoantibodies specific for at least 3 tumor antigens of the panel, wherein analyzing comprises an enzyme-linked immunosorbent assay (ELISA).
7. The method of claim 6 , wherein the panel further comprises one or more detectably labeled tumor antigens selected from RNF216, PIP4K2C, ZBTB16, TAS2R8, WBP2NL, DOK2, PSRC1, MN1, TRIM21, POU4F1, SSMEM1, LMO4, BCL2, KRT8, TSGA13, PVRL4, SNRK, DYRK3, RNF32, JUNB, KCNIP3, CCDC68, CSN3, and TRAIP.
8. The method of claim 6 , wherein the detectable label is a labeled secondary antibody.