Method and device for exchanging information regarding the clinical implications of genomic variations
A method and a device are for exchanging information regarding the clinical implications genomic variations. In an embodiment, the method includes receiving login-data of a user; evaluating the login-data received; establishing an encrypted data connection to the user after the evaluating indicates a positive evaluation of the login-data; saving, upon receiving a dataset in a context of a genomic variation, the dataset received in a memory, context-related with the genomic variation; and evaluating, upon a user request being received and connected with a search query for the genomic variation, a set of datasets from the memory, the datasets being context-related with the genomic variation and the set including the datasets that the user is authorized to receive, and sending the set of datasets to the user.
1. A method for exchanging information regarding clinical implications of genomic variations, comprising:
receiving login-data of a user;
evaluating the login-data received;
establishing an encrypted data connection to the user after the evaluating indicates a positive evaluation of the login-data;
saving, upon receiving a dataset in a context of a genomic variation, the dataset received in a memory, context-related with the genomic variation; and
evaluating, upon a user request being received and connected with a search query for the genomic variation, a set of datasets from the memory, the datasets being context-related with the genomic variation and the set including the datasets that the user is authorized to receive, and sending the set of datasets to the user.
2. The method of claim 1 , wherein, upon receiving the dataset, the dataset is examined for information about authorization of certain users and is marked accordingly when saving.
3. The method of claim 1 , wherein a comment to the dataset in the memory is receivable from the user, and wherein the comment is saved context-related to the dataset.
4. The method claim 1 , wherein at least one of a time stamp and an information about a source is added for a dataset saved in the memory.
5. The method of claim 1 , wherein changes to the dataset are tracked and a history of changes to the dataset is sent to the user after a request.
6. The method of claim 1 , wherein information about authorization of users of the dataset is alterable, the information about authorization being received in the context of the dataset and the information about authorization of the dataset is adjusted according to the information.
7. The method of claim 1 , wherein a content of the dataset received is examined and is saved context related to other datasets.
8. The method of claim 1 , wherein a link of a user-identity with a genomic variation is receivable from a user.
9. The method of claim 1 , wherein the dataset is ranked according to at least one of comments of users and an evidence level.
10. The method of claim 1 , wherein a standardized input interface is used by all users.
11. The method of claim 1 , wherein a genomic variation is identified with one or more of:
a unique gene ID,
a unique Transcript ID or specific genomic regions including a reference genome, and
a variant definition according to Sequence Variant Nomenclature,
wherein, receivable from a user, are at least one of
an assignation of a evidence class describing the clinical actionability, and
free text describing the variant and how the variant should be treated in a clinical context.
12. A device for exchanging information regarding clinical implications of genomic variations, comprising:
a data-interface designed for exchange of data over a network;
a memory designed for saving data pertaining to clinical implications of genomic variations; and
a computing unit designed for
evaluating login-data of a user received via the data-interface;
establishing an encrypted data connection between the user and the device after the evaluating indicates a positive evaluation of the login data;
saving, upon receiving a dataset in a context of a genomic variation, the dataset received in the memory, context-related with the genomic variation; and
evaluating, upon a user request being received and connected with a search query for the genomic variation, a set of datasets from the memory, the datasets being context-related with the genomic variation and the set including the datasets that the user is authorized to receive, and sending the set of datasets to the user.
13. The device of claim 12 , further comprising at least one of
a login-interface designed to manage a login process of the user,
a query-interface designed to manage the output of datasets, and
an update-interface designed to manage a change of a dataset.
14. A non-transitory computer program product storing a computer program, directly loadable into a server and including program elements for performing the method of claim 1 when the computer program is executed by the server.
15. A non-transitory computer-readable medium storing program elements, readable and executable by a computer unit, to perform the method of claim 1 when the program elements are executed by the computer unit.
16. The method of claim 2 , wherein the authorizations of certain users dictates which users are authorized to at least one of read and modify the dataset.
17. The method of claim 16 , wherein a comment to the dataset in the memory is addable by the users, and wherein the comment is saved context-related to the dataset.
18. The method of claim 2 , wherein a comment to the dataset in the memory is addable by the users, and wherein the comment is saved context-related to the dataset.
19. The method claim 2 , wherein at least one of a time stamp and an information about a source is added for a dataset saved in the memory.
20. The method of claim 7 , wherein a content of the dataset received is examined by an algorithm and the dataset is saved according to the result of this examination.
21. The method of claim 7 , wherein the dataset is examined for information about a topic and is saved context related to other datasets comprising the topic.
22. The method of claim 21 , wherein the topic includes a user, a source, a research program, medication, body region or a disease.
23. The method of claim 8 , wherein a notification is sent to the user when a new dataset is saved context related with the genomic variation.
24. The device of claim 12 , further comprising at least one of
a login-interface designed to manage a login process of the user, to at least one of verify credentials, query user groups and query user group access rights,
a query-interface designed to manage an output of datasets, to at least one of identify genomic variants, verify gene names, verify variant names and query variant data based on at least one of access rights, gene names, variant names and identifications of genomic variants, and
an update-interface designed to manage a change of a dataset, to at least one of verify treatment information and insert into at least one of a dataset a treatment and a comment.