Single-domain antibodies and variants thereof against PD-1
Provided are constructs comprising a single-domain antibody (sdAb) moiety that specifically recognizes PD-1. Also provided are methods of making and using these constructs.
1. An isolated anti-programmed cell death protein 1 (anti-PD-1) construct comprising a single-domain antibody (sdAb) moiety specifically recognizing PD-1 (anti-PD-1 sdAb moiety), wherein the anti-PD-1 sdAb moiety comprises any one of the following:
(1) a CDR1 comprising the amino acid sequence of SEQ ID NO: 70, a CDR2 comprising the amino acid sequence of SEQ ID NO: 142, and a CDR3 comprising the amino acid sequence of SEQ ID NO: 214; or
(2) a CDR1 comprising the amino acid sequence of SEQ ID NO: 43, a CDR2 comprising the amino acid sequence of SEQ ID NO: 115, and a CDR3 comprising the amino acid sequence of SEQ ID NO: 187.
2. The isolated anti-PD-1 construct of claim 1 , wherein the anti-PD-1 sdAb moiety comprises a V H H domain comprising the amino acid sequence of any one of SEQ ID NOs: 295 and 321-324.
3. The isolated anti-PD-1 construct of claim 1 , wherein the anti-PD-1 sdAb moiety is camelid, chimeric, partially humanized, or fully humanized.
4. The isolated anti-PD-1 construct of claim 1 , wherein the isolated anti-PD-1 construct is a heavy chain-only antibody (HCAb) comprising the anti-PD-1 sdAb moiety fused to an Fc fragment via a linker.
5. The isolated anti-PD-1 construct of claim 4 , wherein the HCAb is dimeric.
6. The isolated anti-PD-1 construct of claim 4 , wherein the Fc fragment is a human IgG1 (hIgG1) Fc, an hIgG1 Fc comprising an effectorless mutation, an hIgG4 Fc, or an hIgG4 Fc (S228P).
7. The isolated anti-PD-1 construct of claim 4 , wherein the linker comprises the amino acid sequence of any one of SEQ ID NOs: 367-376.
8. The isolated anti-PD-1 construct of claim 4 , wherein the HCAb comprises the amino acid sequence of any one of SEQ ID NOs: 331 and 357-360.
9. The isolated anti-PD-1 construct of claim 1 , wherein the isolated anti-PD-1 construct further comprises a second antibody moiety specifically recognizing a second epitope.
10. The isolated anti-PD-1 construct of claim 9 , wherein the anti-PD-1 sdAb moiety and the second antibody moiety are connected by a peptide linker.
11. The isolated anti-PD-1 construct of claim 10 , wherein the peptide linker comprises the amino acid sequence of any one of SEQ ID NOs: 367-376.
12. The isolated anti-PD-1 construct of claim 9 , wherein the second antibody moiety is a full-length antibody consisting of two heavy chains and two light chains.
13. The isolated anti-PD-1 construct of claim 12 , wherein the Fc fragment of the heavy chain is an hIgG1 Fc, an hIgG1 Fc comprising an effectorless mutation, an hIgG4 Fc, or an hIgG4 Fc (S228P).
14. The isolated anti-PD-1 construct of claim 12 , wherein the isolated anti-PD-1 construct comprises a configuration selected from the group consisting of:
(a) the N-terminus of the anti-PD-1 sdAb moiety is fused to the C-terminus of one of the heavy chains of the full-length antibody;
(b) the C-terminus of the anti-PD-1 sdAb moiety is fused to the N-terminus of one of the heavy chains of the full-length antibody;
(c) the N-terminus of the anti-PD-1 sdAb moiety is fused to the C-terminus of one of the light chains of the full-length antibody;
(d) the C-terminus of the anti-PD-1 sdAb moiety is fused to the N-terminus of one of the light chains of the full-length antibody;
(e) the isolated anti-PD-1 construct comprises four anti-PD-1 sdAb moieties, wherein the C-terminus of the first anti-PD-1 sdAb moiety is fused to the N-terminus of the first heavy chain of the full-length antibody, the C-terminus of the second anti-PD-1 sdAb moiety is fused to the N-terminus of the second heavy chain of the full-length antibody, the C-terminus of the third anti-PD-1 sdAb moiety is fused to the N-terminus of the first light chain of the full-length antibody, and the C-terminus of the fourth anti-PD-1 sdAb moiety is fused to the N-terminus of the second light chain of the full-length antibody;
(f) the isolated anti-PD-1 construct comprises four anti-PD-1 sdAb moieties, wherein the C-terminus of the first anti-PD-1 sdAb moiety is fused to the N-terminus of the second anti-PD-1 sdAb moiety, and the C-terminus of the second anti-PD-1 sdAb moiety is fused to the N-terminus of the first heavy chain of the full-length antibody, the C-terminus of the third anti-PD-1 sdAb moiety is fused to the N-terminus of the fourth anti-PD-1 sdAb moiety, and the C-terminus of the fourth anti-PD-1 sdAb moiety is fused to the N-terminus of the second heavy chain of the full-length antibody;
(g) the isolated anti-PD-1 construct comprises two anti-PD-1 sdAb moieties, wherein the N-terminus of the first anti-PD-1 sdAb moiety is fused to the C-terminus of the first heavy chain of the full-length antibody, and the N-terminus of the second anti-PD-1 sdAb moiety is fused to the C-terminus of the second heavy chain of the full-length antibody;
(h) the isolated anti-PD-1 construct comprises two anti-PD-1 sdAb moieties, wherein the C-terminus of the first anti-PD-1 sdAb moiety is fused to the N-terminus of the first heavy chain of the full-length antibody, and the C-terminus of the second anti-PD-1 sdAb moiety is fused to the N-terminus of the second heavy chain of the full-length antibody;
(i) the isolated anti-PD-1 construct comprises two anti-PD-1 sdAb moieties, wherein the N-terminus of the first anti-PD-1 sdAb moiety is fused to the C-terminus of the first light chain of the full-length antibody, and the N-terminus of the second anti-PD-1 sdAb moiety is fused to the C-terminus of the second light chain of the full-length antibody; and
(j) the isolated anti-PD-1 construct comprises two anti-PD-1 sdAb moieties, wherein the C-terminus of the first anti-PD-1 sdAb moiety is fused to the N-terminus of the first light chain of the full-length antibody, and the C-terminus of the second anti-PD-1 sdAb moiety is fused to the N-terminus of the second light chain of the full-length antibody.
15. The isolated anti-PD-1 construct of claim 12 , wherein the full-length antibody specifically recognizes TIGIT (anti-TIGIT full-length antibody), and wherein the anti-TIGIT full-length antibody comprises:
(a) HC-CDR1, HC-CDR2, and HC-CDR3 of a heavy chain comprising the amino acid sequence of SEQ ID NO: 377, and LC-CDR1, LC-CDR2, and LC-CDR3 of a light chain comprising the amino acid sequence of SEQ ID NO: 378; or
(b) a heavy chain comprising the amino acid sequence of SEQ ID NO: 377, and a light chain comprising the amino acid sequence of SEQ ID NO: 378.
16. An isolated anti-PD-1 construct comprising an anti-PD-1 sdAb moiety, wherein the anti-PD-1 sdAb moiety comprises CDR1, CDR2, and CDR3 of any one of SEQ ID NOs: 295 and 321-324.