IP Library Granted Patent US 11,753,443
Granted Patent B2
US 11,753,443 · App. 16/964,708 · Granted Sep 12, 2023

Conjugated hepcidin mimetics

Inventors: Gregory Thomas Bourne (Brisbane, AU); Ashok Bhandari (Pleasanton, CA); Brian Troy Frederick (Ben Lomand, CA); Jie Zhang (Salisbury, AU); Adam Stephenson (Chapel Hill, AU); Mark Leslie Smythe (Bardon, AU); Roopa Taranath (Cupertino, CA); David Liu (Newark, CA)
Assignee: Protagonist Therapeutics, Inc.
C07K7/08A61K9/0053A61K38/00
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Quick Facts
Patent No.
US 11,753,443
App. No.
16/964,708
Granted
Sep 12, 2023
Kind
B2
Abstract

The present invention provides hepcidin analogues with improved in vivo half lives, and related pharmaceutical compositions and methods of use thereof.

Claims (100)

1. A hepcidin analogue comprising:

(a) a peptide according to Formula I:

R 1 -Asp-Thr-His-B1-B2-B3-B4-Xaa1-B6-Xaa2-J-Y1-Y2-R 2 (I)

or

(b) a peptide dimer comprising two peptides according to Formula I,

or a pharmaceutically acceptable salt thereof,

wherein:

R 1 is hydrogen, C 1 -C 6 alkyl, C 6 -C 12 aryl, C 6 -C 12 aryl-C 1 -C 6 alkyl, C 1 -C 20 alkanoyl, or C 1 -C 20 cycloalkanoyl;

R 2 is —NH 2 or —OH;

Xaa1 is B5; and

i) B5 is absent, Lys, D-Lys, Orn, homoSer, Gln, (D)Gln, Lys(Ac), Ile, Abu, Leu, Ala, D-Ala, bAla, or Nleu; and

ii) Xaa2 is B7(L1Z);

or

Xaa1 is B5(L1Z); and

i) B5 is Lys, D-Lys, Orn, homoSer, Gln, Lys(Ac), Ile, Abu, Leu, or Nleu; and

ii) Xaa2 is absent or B7;

each of B1 and B6 is independently a-MePhe, NMe-Phe, 2-Nal, 1-Nal, D-1-Nal, D-2-Nal, 3,3-diPhenylGly, Tic, Bip, Trp, bhTrp, hPhe,

substituted Phe, substituted bhPhe, substituted Trp, or substituted bhTrp;

B2 is Pro, D-Pro, bhPro, D-bhPro, NPC, or D-NPC;

B3 is Cys, homoCys, (D)Cys, a-MeCys, or Pen;

B4 is Ile, Val, Leu, or NLeu;

B7 is Glu, Dapa, Lys, D-Lys, homoLys, or a-Me-Lys;

L1 is absent, Dapa, D-Dapa, isoGlu, PEG, Ahx, isoGlu-PEG, PEG-Ahx, isoGlu-Ahx, or isoGlu-PEG-Ahx;

Z is a half-life extension moiety;

J is Pro, -Pro-Arg-, -Pro-Lys-, -Pro-(D)Lys-, -Pro-Arg-Ser-, -Pro-Arg-Ser-Lys-(SEQ ID NO:249), -Pro-Arg-Ser-Lys-Sar-(SEQ ID NO:250), -Pro-Arg-Ser-Lys-Gly-(SEQ ID NO:251), or absent;

Y1 is Cys, homoCys, (D)Cys, NMeCys, aMeCys, or Pen;

Y2 is an amino acid or absent;

substituted Phe is phenylalanine wherein phenyl is substituted with F, Cl, Br, I, OH, methoxy, dimethoxy, dichloro, dimethyl, difluoro, pentafluoro, allyloxy, azido, nitro, 4-carbamoyl-2,6-dimethyl, trifluoromethoxy, trifluoromethyl, phenoxy, benzyloxy, carbamoyl, t-Bu, carboxyl, CN, or guanidine;

substituted bhPhe is b-homophenylalanine wherein phenyl is substituted with F, Cl, Br, I, OH, methoxy, dimethoxy, dichloro, dimethyl, difluoro, pentafluoro, allyloxy, azido, nitro, 4-carbamoyl-2,6-dimethyl, trifluoromethoxy, trifluoromethyl, phenoxy, benzyloxy, carbamoyl, t-Bu, carboxyl, CN, or guanidine;

substituted Trp is N-methyl-L-tryptophan, a-methyltryptophan, or tryptophan substituted with F, Cl, OH, or t-Bu;

substituted bhTrp is N-methyl-L-b-homotryptophan, a-methyl-b-homotryptophan, or b-homotryptophan substituted with F, Cl, OH, or t-Bu;

Peg1 is —C(O)—CH 2 —CH 2 —O—CH 2 —CH 2 —NH—;

Peg2 is —C(O)—CH 2 —CH 2 —O—CH 2 —CH 2 —O—CH 2 —CH 2 —NH—;

Peg4 is —C(O)—CH 2 —CH 2 —(O—CH 2 —CH 2 ) 4 —NH—;

Peg8 is —C(O)—CH 2 —CH 2 —(O—CH 2 —CH 2 ) 8 —NH—; and

Peg11 is —C(O)—CH 2 —CH 2 —(O—CH 2 —CH 2 ) 11 —O—CH 2 —CH 2 —NH—;

wherein

i) the peptide of formula I is optionally PEGylated with Peg1, Peg2, Peg4, Peg8, or Peg11 on one or more R 1 , B1, B2, B3, B4, B5, B6, B7, J, Y1, Y2, or R 2 ; and

ii) the peptide is cyclized via a disulfide bond between B3 and Y1.

2. The hepcidin analogue according to claim 1 , comprising a peptide according to Formula A-I:

R 1 -Asp-Thr-His-B1-B2-B3-B4-B5-B6-B7(L1Z)-J-Y1-Y2-R 2 (A-I)

or a pharmaceutically acceptable salt thereof,

wherein:

R 1 is hydrogen, C 1 -C 6 alkyl, C 6 -C 12 aryl, C 6 -C 12 aryl-C 1 -C 6 alkyl, C 1 -C 20 alkanoyl, or C 1 -C 20 cycloalkanoyl;

R 2 is —NH 2 or —OH;

each of B1 and B6 is independently

a-MePhe, NMe-Phe,

2-Nal, 1-Nal, D-1-Nal, D-2-Nal, 3,3-diPhenylGly, Tic, Bip, Trp, bhTrp, hPhe, Tyr(Me), substituted Phe, substituted bhPhe, substituted Trp, or substituted bhTrp;

B2 is Pro, D-Pro, bhPro, D-bhPro, NPC, or D-NPC;

B3 is Cys, homoCys, (D)Cys, a-MeCys, or Pen;

B4 is Ile, Val, Leu, or NLeu;

B5 is absent, Lys, D-Lys, Orn, homoSer, Gln, (D)Gln, Lys(Ac), Ile, Abu, Leu, Ala, D-Ala, bAla, or Nleu;

B7 is Dapa, Lys, D-Lys, homoLys, or a-Me-Lys; and wherein L1 is attached to N ε of Lys, D-Lys, homoLys, or a-Me-Lys; or N β of Dapa;

L1 is absent, Dapa, D-Dapa, or isoGlu, PEG, Ahx, isoGlu-PEG, PEG-Ahx, isoGlu-Ahx, or isoGlu-PEG-Ahx;

Z is a half-life extension moiety, wherein the half-life extension moiety is C 10 -C 21 alkanoyl;

J is Pro, -Pro-Arg-, -Pro-Lys-, -Pro-(D)Lys-, -Pro-Arg-Ser-, -Pro-Arg-Ser-Lys-(SEQ ID NO:249), -Pro-Arg-Ser-Lys-Sar-(SEQ ID NO:250), -Pro-Arg-Ser-Lys-Gly-(SEQ ID NO:251), or absent;

Y1 is Cys, homoCys, (D)Cys, NMeCys, aMeCys, or Pen;

Y2 is an amino acid or absent;

substituted Phe is phenylalanine wherein phenyl is substituted with F, Cl, Br, I, OH, methoxy, dimethoxy, dichloro, dimethyl, difluoro, pentafluoro, allyloxy, azido, nitro, 4-carbamoyl-2,6-dimethyl, trifluoromethoxy, trifluoromethyl, phenoxy, benzyloxy, carbamoyl, t-Bu, carboxyl, CN, or guanidine;

substituted bhPhe is b-homophenylalanine wherein phenyl is substituted with F, Cl, Br, I, OH, methoxy, dimethoxy, dichloro, dimethyl, difluoro, pentafluoro, allyloxy, azido, nitro, 4-carbamoyl-2,6-dimethyl, trifluoromethoxy, trifluoromethyl, phenoxy, benzyloxy, carbamoyl, t-Bu, carboxyl, CN, or guanidine;

substituted Trp is N-methyl-L-tryptophan, a-methyltryptophan, or tryptophan substituted with F, Cl, OH, or t-Bu;

substituted bhTrp is N-methyl-L-b-homotryptophan, a-methyl-b-homotryptophan, or b-homotryptophan substituted with F, Cl, OH, or t-Bu; and PEG is as described in claim 1 ;

wherein

i) the peptide of formula I is optionally PEGylated on one or more R 1 , B1, B2, B3, B4, B5, B6, J, Y1, Y2, or R 2 ;

ii) the peptide is cyclized via a disulfide bond between B3 and Y1; and

iii) when B6 is Phe, then B5 is other than Lys.

3. The hepcidin analogue according to claim 1 , comprising a peptide according to Formula B-I:

R 1 -Asp-Thr-His-B1-B2-B3-B4-B5(L1Z)-B6-B7-J-Y1-Y2-R 2 (B-I)

or a pharmaceutically acceptable salt thereof,

wherein:

R 1 is hydrogen, C 1 -C 6 alkyl, C 6 -C 12 aryl, C 6 -C 12 aryl-C 1 -C 6 alkyl, C 1 -C 20 alkanoyl, or C 1 -C 20 cycloalkanoyl;

R 2 is —NH 2 or —OH;

each of B1 and B6 is independently

NMe-Phe,

2-Nal, 1-Nal, D-1-Nal, D-2-Nal, 3,3-diPhenylGly, Tic, Bip, Trp, bhTrp, hPhe, Tyr(Me), substituted Phe, substituted bhPhe, substituted Trp, or substituted bhTrp;

B2 is Pro, D-Pro, bhPro, D-bhPro, NPC, or D-NPC;

B3 is Cys, homoCys, (D)Cys, a-MeCys, or Pen;

B4 is Ile, Val, Leu, or NLeu;

B5 is Lys, D-Lys, Orn, homoSer, Gln, Lys(Ac), Ile, Abu, Leu, or Nleu;

B7 is Glu or absent;

L 1 is absent or isoGlu, PEG, Ahx, isoGlu-PEG, PEG-Ahx, isoGlu-Ahx, or isoGlu-PEG-Ahx;

Z is a half-life extension moiety, wherein the half-life extension moiety is C 10 -C 21 alkanoyl;

J is Pro, Arg, Gly, -Pro-Arg-, -Pro-Lys-, -Pro-(D)Lys-, -Pro-Arg-Ser-, -Pro-Arg-Ser-Lys-(SEQ ID NO:249), -Pro-Arg-Ser-Lys-Sar-(SEQ ID NO:250), -Pro-Arg-Ser-Lys-Gly-(SEQ ID NO:251), or absent;

Y1 is Cys, homoCys or Pen;

Y2 is an amino acid or absent;

substituted Phe is phenylalanine wherein phenyl is substituted with F, Cl, Br, I, OH, methoxy, dimethoxy, dichloro, dimethyl, difluoro, pentafluoro, allyloxy, azido, nitro, 4-carbamoyl-2,6-dimethyl, trifluoromethoxy, trifluoromethyl, phenoxy, benzyloxy, carbamoyl, t-Bu, carboxyl, CN, or guanidine;

substituted bhPhe is b-homophenylalanine wherein phenyl is substituted with F, Cl, Br, I, OH, methoxy, dimethoxy, dichloro, dimethyl, difluoro, pentafluoro, allyloxy, azido, nitro, 4-carbamoyl-2,6-dimethyl, trifluoromethoxy, trifluoromethyl, phenoxy, benzyloxy, carbamoyl, t-Bu, carboxyl, CN, or guanidine;

substituted Trp is N-methyl-L-tryptophan, a-methyltryptophan, or tryptophan substituted with F, Cl, OH, or t-Bu;

substituted b-hTrp is N-methyl-L-b-homotryptophan, a-methyl-b-homotryptophan, or b-homotryptophan substituted with F, Cl, OH, or t-Bu; and PEG is as described in claim 1 ;

wherein

i) the peptide of formula I is optionally PEGylated on one or more R 1 , B1, B2, B3, B4, B6, B7, J, Y1, Y2, or R 2 ; and

ii) the peptide is cyclized via a disulfide bond between B3 and Y1; and

iii) when Y1 is Cys, and Y2 is Lys, then J is Pro, Arg, Gly, -Pro-Arg-, -Pro-Arg-Ser-,-Pro-Arg-Ser-Lys-(SEQ ID NO:249), or absent.

4. The hepcidin analogue or pharmaceutically acceptable salt thereof according to claim 1 , wherein —J-Y1-Y2—is —Cys-, -Pro-Cys-, -Lys-Cys-, -(D)Lys-Cys-,-(D)Lys-Pen-,-Dap-Cys-, -Cys-(D)Lys-, -Dap-hCys-, -Pro-Arg-Cys-, -Pro-Arg-Ser-Cys-(SEQ ID NO:253), -Pro-Arg-Ser-Lys-Cys-(SEQ ID NO:254), or —Pro-Arg-Ser-Lys-Sar-Cys-(SEQ ID NO:255).

5. The hepcidin analogue or pharmaceutically acceptable salt thereof according to claim 1 , wherein L1 is a single bond, iso-Glu, Ahx, iso-Glu-Ahx, PEG, PEG-Ahx, iso-Glu-PEG-Ahx; and wherein PEG is PEG1, PEG2, PEG3, PEG4, or PEG11.

6. The hepcidin analogue or pharmaceutically acceptable salt thereof according to claim 1 , wherein Z is Palm.

7. The hepcidin analogue or pharmaceutically acceptable salt thereof according to claim 1 , wherein R 2 is NH 2 .

8. The hepcidin analogue or pharmaceutically acceptable salt thereof according to claim 1 , wherein R 2 is OH.

9. A pharmaceutical composition comprising the hepcidin analogue or pharmaceutically acceptable salt thereof of claim 1 and a pharmaceutically acceptable carrier, excipient, or vehicle.

10. A method for treating a disease of iron metabolism in a subject in need thereof comprising providing to the subject an effective amount of the pharmaceutical composition of claim 9 .

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 15, 2022
From: BOURNE, GREGORY THOMAS; BHANDARI, ASHOK; FREDERICK, BRIAN TROY; ZHANG, JIE; STEPHENSON, ADAM; SMYTHE, MARK LESLIE; TARANATH, ROOPA; LIU, DAVID
To: PROTAGONIST THERAPEUTICS, INC.
Reel/Frame 059615/0728 →
Continuity (5)
Provisional Application 62749450 · Oct 23, 2018
Provisional Application 62717390 · Aug 10, 2018
Provisional Application 62627952 · Feb 8, 2018
Provisional Application 62627948 · Feb 8, 2018
Related Publication 20200361992A1 · Nov 19, 2020
Cited By (2)
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