IP Library Granted Patent US 12,209,082
Granted Patent B2
US 12,209,082 · App. 16/969,529 · Granted Jan 28, 2025

Antibacterial agents: soluble salts and aqueous formulations of pyronins

Inventors: Richard H. Ebright (New Brunswick, NJ); Yon W. Ebright (New Brunswick, NJ)
Assignee: RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY
C07D417/06A01N47/12A61K9/0019A61P31/04A61P31/06C07B2200/05C07B2200/07
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Quick Facts
Patent No.
US 12,209,082
App. No.
16/969,529
Granted
Jan 28, 2025
Kind
B2
Abstract

The invention provides salts of formula Ia, Ib, Ic, or Id: wherein variables are as described in the specification, as well as compositions comprising a salt of formula Ia-Id, methods of making such salts, and methods of using such salts as, e.g., inhibitors of bacterial RNA polymerase and as antibacterial agents.

Claims (17)

1. A composition comprising the salt of formula Ia:

wherein:

W is sulfur oxygen, or nitrogen;

X, Y, and Z are individually carbon, sulfur, oxygen, or nitrogen, wherein at least two of X, Y, and Z are carbon;

one of R 1 and R 2 is C 1 -C 10 alkyl, C 2 -C 10 alkenyl, C 1 -C 10 alkoxy, aryloxy, heteroaryloxy, or NR a R b , wherein any C 1 -C 10 alkyl, C 2 -C 10 alkenyl, or C 1 -C 10 alkoxy, is optionally substituted by at least one of halogen, hydroxy, C 1 -C 5 alkoxy, tetrahydrofuranyl, or furanyl, and wherein any aryloxy or heteroaryloxy is optionally substituted by at least one of halogen, hydroxy, C 1 -C 5 alkyl, C 1 -C 5 alkoxy, aryl, or heteroaryl, wherein any C 1 -C 5 alkyl, C 1 -C 5 alkoxy, aryl, and heteroaryl is optionally substituted by at least one of halogen, hydroxy, C 1 -C 5 alkyl, or C 1 -C 5 alkoxy; or one of R 1 and R 2 is a 5-6-membered saturated, partially unsaturated, or aromatic heterocycle that is optionally substituted by at least one of halogen, hydroxy, C 1 -C 10 alkyl, C 2 -C 10 alkenyl, or C 1 -C 10 alkoxy; and the other of R 1 and R 2 is absent or is one of H, halogen, C 1 -C 10 alkyl, C 2 -C 10 alkenyl, or C 1 -C 10 alkoxy, wherein any C 1 -C 10 alkyl, C 2 -C 10 alkenyl, or C 1 -C 10 alkoxy is optionally substituted by at least one of halogen, hydroxy, or C 1 -C 5 alkoxy;

R 3 is absent, or is one of H, C 1 -C 2 alkyl, or halogen-substituted C 1 -C 2 alkyl;

R 4 is absent, or is one of H, halogen, C 1 -C 2 alkyl, or halogen-substituted C 1 -C 2 alkyl;

R 6 is H, halogen, or methyl that is optionally is substituted by halogen;

G is one of —CH═CH—NHC (O)—R 7 , —CH═CH—NHC(S)—R 7 , —CH 2 CH 2 NHC (O)—R 7 , —CH 2 CH 2 NHC(S)—R 7 , —CH 2 NHNHC(O)—R 7 , or —CH 2 NHNHC(S)—R 7 ;

R 7 is one of C 1 -C 6 alkyl, —O (C 1 -C 6 alkyl), —S(C 1 -C 6 alkyl), or —N(R 8 ) 2 , provided R 7 is not deuterated alkyl;

each R 8 is independently one of hydrogen or —C 1 -C 6 alkyl;

R 9 is C 1 -C 10 alkyl or C 2 -C 10 alkenyl, wherein any C 1 -C 10 alkyl or C 2 -C 10 alkenyl is optionally substituted by at least one of halogen, hydroxy, alkoxy, or NR a R b ;

each R a is C 1 -C 10 alkyl that is optionally substituted by at least one of halogen, hydroxy, or C 1 -C 5 alkoxy;

each R b is H or C 1 -C 10 alkyl that is optionally substituted by at least one of halogen, hydroxy, or C 1 -C 5 alkoxy; and

M + is a pharmaceutically acceptable cation; and water, wherein the composition is substantially co-solvent free, substantially surfactant free, and has a pH of from about 7 to about 9, and wherein the concentration of the salt is at least about 0.25 mg/mL.

2. The salt:

3. A composition comprising the salt of claim 2 and water, wherein the composition is substantially co-solvent free, substantially surfactant free, and has a pH of from about 7 to about 9, and wherein the concentration of the salt is at least about 0.25 mg/mL.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 3, 2023
From: EBRIGHT, RICHARD; EBRIGHT, YON
To: RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY
Reel/Frame 064137/0702 →
CONFIRMATORY LICENSE Recorded Jan 7, 2021
From: RUTGERS, THE STATE UNIVERSITY OF N.J.
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 054916/0841 →
Continuity (2)
Provisional Application 62630117 · Feb 13, 2018
Related Publication 20210002266A1 · Jan 7, 2021
References Cited (56)
US 4061769A · Ohno et al. · 1977 [cited by applicant]
US 4421763A · Hamano et al. · 1983 [cited by applicant]
US 6022983A · Wuonola et al. · 2000 [cited by applicant]
US 6169181B1 · Romines et al. · 2001 [cited by applicant]
US 6191288B1 · Ramamoorthy · 2001 [cited by applicant]
US 6228882B1 · Wuonola et al. · 2001 [cited by applicant]
US 8114583B2 · Ebright et al. · 2012 [cited by applicant]
US 8772332B2 · Ebright et al. · 2014 [cited by applicant]
US 9133155B2 · Ebright et al. · 2015 [cited by applicant]
US 9187446B2 · Ebright et al. · 2015 [cited by applicant]
US 9315494B2 · Moslin et al. · 2016 [cited by applicant]
US 9315495B2 · Ebright et al. · 2016 [cited by applicant]
US 9592221B2 · Ebright et al. · 2017 [cited by applicant]
US 20030065039A1 · Kharazmi et al. · 2003 [cited by applicant]
US 20050187170A1 · Bantia et al. · 2005 [cited by applicant]
US 20060100291A1 · Perry et al. · 2006 [cited by applicant]
US 20060246479A1 · Ebright · 2006 [cited by applicant]
US 20070292355A1 · Tamarkin et al. · 2007 [cited by applicant]
US 20130237595A1 · Ebright et al. · 2013 [cited by applicant]
US 20130289128A1 · Ebright et al. · 2013 [cited by applicant]
US 20130296421A1 · Ebright et al. · 2013 [cited by applicant]
US 20140073688A1 · Pfarr et al. · 2014 [cited by applicant]
US 20150011647A1 · Ebright et al. · 2015 [cited by applicant]
US 20150031640A1 · Ebright et al. · 2015 [cited by applicant]
US 20150051275A1 · Ebright et al. · 2015 [cited by applicant]
US 20160263083A1 · Ebright et al. · 2016 [cited by applicant]
US 20210002246A1 · Ebright et al. · 2021 [cited by applicant]
WO 2007094799 · 2007 [cited by applicant]
WO 2012033846 · 2012 [cited by applicant]
WO 2012037508 · 2012 [cited by applicant]
WO 2013119564 · 2013 [cited by applicant]
WO 2013142812 · 2013 [cited by applicant]
WO 2013192352 · 2013 [cited by applicant]
WO 2014090875 · 2014 [cited by applicant]
WO 2019160873 · 2019 [cited by applicant]
Berge et al. J. Pharm. Sci., 1977, 66 (1), 1-19. [cited by examiner]
Andre , et al., “Novel synthetic molecules targeting the bacterial RNA polymerase assembly”, Journal of Antimicrobial Chemotherapy, 57, 245-251 (2006). [cited by applicant]
Belogurov , et al., “Transcription inactivation through local refolding of the RNA polymerase structure”, Nature 457 (7227), 332-335 (2009). [cited by applicant]
Chatterjee , et al., “Isolation and structure of archangelenone. Flavonoid constituent of Angelica archangelica”, XP002692911, Database Caplus [Online] Chemical Abstracts accession No. 1973:489536. [cited by applicant]
Chopra, I. , “Bacterial RNA polymerase: a promising target for the discovery of new antimicrobial agents”, Curr. Opin. Investig. Drugs 8, 600-607 (2007). [cited by applicant]
Darst , “New inhibitors targeting bacterial RNA polymerase”, Trends Biochem. Sci. 29 (4), 159-162 (2004). [cited by applicant]
Doundoulakis , et al., “Myxopyronin B analogs as inhibitors of RNA polymerase, synthesis and biological evaluation”, Bioorganic and Medicinal Chemistry Letters, vol. 14 (22), 5667-5672 (2004). [cited by applicant]
Doundoulakis , et al., “Myxopyronin B analogs as inhibitors of RNA polymerase, synthesis and biological evaluation”, HCAPLUS Accession No. 2004:863124, 5 pages, Bioorganic & Medicinal Chemistry Letters, 14(22), 5667-567… [cited by applicant]
Heron, M. , et al., “Deaths: Final Data for 2006”, National Vital Statistics Reports, vol. 57 (14), 135 pages (Apr. 17, 2009). [cited by applicant]
Ho , et al., “Structures of RNA polymerase-antibiotic complexes”, Curr. Opin. Structl. Biol. 19, 715-723 (2009). [cited by applicant]
HU , “Total syntheses of biologically active natural products: motuporin, oleandolide, (±)-myxopyronin A and B”, HCAPLUS Accession No. 2000:514322, 1 page, Diss. Abstr. Int., B 2000, 60(10), 5094. [cited by applicant]
Klevins, R , et al., “Estimating health care-associated infections and deaths in U.S. hospitals, 2002”, Public Health Reports 122, 160-166 (2007). [cited by applicant]
Lira, R. , et al., “Syntheses of novel myxopyronin B analogs as potential inhibitors of bacterial RNA polymerase”, Bioorganic & Medicinal Chemistry Letters 17(24), 6797-6800 (2007). [cited by applicant]
Mukhopadhyay , et al., “The RNA polymerase “switch region” is a target for inhibitors”, Cell 135, 295-307 (2008). [cited by applicant]
Mukhopadhyay , et al., “The RNA polymerase “switch region” is a target for inhbitiors”, HCAPLUS Accession No. 2008:1312023, 2 pages, Cell 135(2), 295-307 (2008). [cited by applicant]
Patent Cooperation Treaty , International Searching Authority, Search Report and Written Opinion for PCT/US2019/017700, 12 pages, Jun. 20, 2019. [cited by applicant]
Scott, R , et al., “The Direct Medical costs of Healthcare-Associated Infections in U.S. Hospitals and the Benefits of Prevention”, Public Health Reports, 122, 160-166, Center for Disease Control and Prevention, 16 page… [cited by applicant]
Srivastava , et al., “New Target for Inhibition of Bacterial RNA Polymerase: Switch Region”, Curr. Opin. Microbiol. 14, 532-543 (2011). [cited by applicant]
Villain-Guillot , et al., “Progress in targeting bacterial transcription”, Drug Discov. Today 12 (5/6), 200-208 (2007). [cited by applicant]
Werner, S , et al., “Synthesis of non-natural flavanones and dihydrochalcones in metabolically engineered yeast”, Journal of Molecular Catalysis B: Enzymatic 66, 257-263 (2010). [cited by applicant]
World Health Organization , “The Global Burden of Disease—2004 Update”, World Health Organization, Geneva, ISBN 978 92 4 156371 0, 160 pages (2008). [cited by applicant]