IP Library Granted Patent US 12,209,250
Granted Patent B2
US 12,209,250 · App. 16/741,827 · Granted Jan 28, 2025

Engineered Herpes Simplex Virus-1 (HSV-1) vectors and uses thereof

Inventors: Ron Weiss (Newton, MA); Maria Hottelet Foley (Cambridge, MA); Jin Huh (Watertown, MA); Ross D. Jones (Cambridge, MA)
Assignee: Massachusetts Institute of Technology
C12N15/86A61K35/76A61K48/005C12N7/00C12N15/113C12N2710/16643C12N2800/10
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Quick Facts
Patent No.
US 12,209,250
App. No.
16/741,827
Granted
Jan 28, 2025
Kind
B2
Abstract

Provided herein are engineered HSV-1 vectors comprising a modified HSV-1 genome. The engineered HSV-1 vectors can be used to deliver genetic circuits (e.g., up to 100 kb) to cells in vitro or in vivo. Methods of treating or diagnosing a disease (e.g., cancer) using the engineered HSV-1 vectors described herein are also provided.

Claims (21)

1. An engineered Herpes Simplex Virus-1 (HSV-1) vector comprising a modified HSV-1 genome comprising non-functional deletions in both copies of the gene encoding Infected Cell Protein 4 (ICP4), non-functional deletions in both copies of the gene encoding Infected Cell Protein 0 (ICP0), a deletion in the gene encoding Virion Protein 16 (VP16) that results in a truncation of the VP16 protein at amino acid 422, and one or more deletions in one copy of the Latency Associated Transcript (LAT) region,

wherein a transcript of a LAT region is produced in an infected cell, and

wherein the HSV-1 genome comprises a nucleotide sequence having 95% sequence identity to the nucleotide sequence of SEQ ID NO: 1.

2. The engineered HSV-1 vector of claim 1 , wherein the modified HSV-1genome further comprises deletions in one or more genes encoding γ34.5, ICP6, ICP8, ICP27, ICP22, or ICP47.

3. The engineered HSV-1 vector of claim 2 , wherein one or more deletions render one or more of γ34.5, LAT, ICP27, ICP22, or ICP47 non-functional.

4. The engineered HSV-1 vector of claim 1 , wherein the modified HSV-1 genome is from HSV-1 strains F, 17, or KOS.

5. The engineered HSV-1 vector of claim 1 , further comprising one or more genetic circuits.

6. The engineered HSV-1 vector of claim 5 , wherein the one or more genetic circuits are up to 150 kb in length.

7. The engineered HSV-1 vector of claim 5 , wherein the one or more genetic circuits encodes an output molecule.

8. The engineered HSV-1 vector of claim 7 , wherein the output molecule is an HSV-1 protein, a therapeutic molecule, a diagnostic molecule, a functional molecule, or an inhibitor of innate immune response.

9. The engineered HSV-1 vector of claim 8 , wherein the inhibitor of innate immune response is an RNA interference (RNAi) molecule that targets an innate immune response component.

10. An isolated packaging cell comprising the engineered HSV-1 vector of claim 1 .

11. The isolated packaging cell of claim 10 , wherein the engineered HSV-1 vector is integrated into the genome of the isolated packaging cell.

12. The isolated packaging cell of claim 10 , wherein the isolated packaging cell produces at least 1 plaque forming units of HSV-1 viral particles.

13. The isolated packaging cell of claim 10 , wherein the isolated packaging cell is a U2OS cell.

14. An engineered HSV-1 viral particle comprising the engineered HSV-1 vector of claim 1 .

15. A method of treating a disease, the method comprising administering an effective amount of the engineered HSV-1 viral particle of claim 14 to a subject in need thereof, wherein the engineered HSV-1 vector of the engineered HSV-1 viral particle comprises a genetic circuit encoding a therapeutic molecule.

16. A method of diagnosing a disease, the method comprising administering an effective amount of the engineered HSV- 1 viral particle of claim 14 to a subject in need thereof, wherein the engineered HSV-1 vector of the engineered HSV-1 viral particle comprises a genetic circuit encoding a diagnostic molecule.

17. A method of delivering a genetic circuit into a cell, comprising contacting the cell with the engineered HSV-1 vector of claim 1 , wherein the engineered HSV-1 vector comprises a genetic circuit.

18. The engineered HSV-1 vector of claim 1 , wherein the modified HSV-1 genome comprises a nucleotide sequence having 99% sequence identity to the nucleotide sequence of SEQ ID NO: 1.

19. The engineered HSV-1 vector of claim 1 , wherein the modified HSV-1 genome comprises the nucleotide sequence of SEQ ID NO: 1.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 26, 2022
From: WEISS, RON; HOTTELET FOLEY, MARIA; HUH, JIN; JONES, ROSS D.
To: MASSACHUSETTS INSTITUTE OF TECHNOLOGY
Reel/Frame 060908/0326 →
Continuity (2)
Provisional Application 62818464 · Mar 14, 2019
Related Publication 20200291428A1 · Sep 17, 2020
References Cited (72)
US 4683202A · Mullis · 1987 [cited by applicant]
US 5837532A · Preston · 1998 [cited by examiner]
US 5928906A · Köster et al. · 1999 [cited by applicant]
US 6319703B1 · Speck · 2001 [cited by examiner]
US 10174341B2 · Glorioso, III · 2019 [cited by examiner]
US 10391164B2 · Dubensky, Jr. · 2019 [cited by examiner]
US 20070003571A1 · Coffin · 2007 [cited by examiner]
US 20160008458A1 · Mahalingam · 2016 [cited by examiner]
US 20170073685A1 · Maeder · 2017 [cited by examiner]
US 20200224220A1 · Finer · 2020 [cited by examiner]
WO WO199815637A1 · 1998 [cited by applicant]
WO WO2001046449A1 · 2001 [cited by applicant]
WO WO2015009952A1 · 2015 [cited by applicant]
WO WO2016040395A1 · 2016 [cited by applicant]
WO WO2017132552A1 · 2017 [cited by examiner]
WO WO2019027414A1 · 2019 [cited by applicant]
Thompson RL, Preston CM, Sawtell NM. De novo synthesis of VP16 coordinates the exit from HSV latency in vivo. PLoS Pathog. Mar. 2009;5(3):e1000352. doi: 10.1371/journal.ppat.1000352. Epub Mar. 27, 2009. (Year: 2009). [cited by examiner]
Lam Q, Smibert CA, Koop KE, Lavery C, Capone JP, Weinheimer SP, Smiley JR. Herpes simplex virus VP16 rescues viral mRNA from destruction by the virion host shutoff function. EMBO J. May 15, 1996;15(10):2575-81. (Year: 1… [cited by examiner]
Preston CM, Nicholl MJ. Repression of gene expression upon infection of cells with herpes simplex virus type 1 mutants impaired for immediate-early protein synthesis. J Virol. Oct. 1997;71(10):7807-13. (Year: 1997). [cited by examiner]
Yao F, Schaffer PA. An activity specified by the osteosarcoma line U2OS can substitute functionally for ICP0, a major regulatory protein of herpes simplex virus type 1. J Virol. Oct. 1995;69(10):6249-58. (Year: 1995). [cited by examiner]
Preston CM, Mabbs R, Nicholl MJ. Construction and characterization of herpes simplex virus type 1 mutants with conditional defects in immediate early gene expression. Virology. Mar. 3, 1997;229(1):228-39. [cited by examiner]
Lim F. “HSV-1 as a Model for Emerging Gene Delivery Vehicles”, International Scholarly Research Notices, vol. 2013, Article ID 397243, 12 pages, 2013. (Year: 2013). [cited by examiner]
Smiley JR, Duncan J. Truncation of the C-terminal acidic transcriptional activation domain of herpes simplex virus VP16 produces a phenotype similar to that of the in1814 linker insertion mutation. J Virol. Aug. 1997;71… [cited by examiner]
Preston CM, Mabbs R, Nicholl MJ. Construction and characterization of herpes simplex virus type 1 mutants with conditional defects in immediate early gene expression. Virology. Mar. 3, 1997;229(1):228-39. (Year: 1997). [cited by examiner]
Grant K. “Production and Purification of Highly Replication Defective HSV-1 Based Gene Therapy Vectors”. PhD Dissertation, University of Pittsburgh, 2008. (Year: 2008). [cited by examiner]
International Search Report and Written Opinion for PCT/US2013/073062, mailed on May 20, 2014. [cited by applicant]
International Preliminary Report on Patentability for PCT/US2013/073062, mailed on Jun. 9, 2015. [cited by applicant]
Enk et al., HSV1 MicroRNA Modulation of GPI Anchoring and Downstream Immune Evasion. Cell Rep. Oct. 18, 2016;17(4):949-956. doi: 10.1016/j.celrep.2016.09.077. PMID: 27760325; PMCID: PMC5081403. [cited by applicant]
Fu et al., Incorporation of the B18R gene of vaccinia virus into an oncolytic herpes simplex virus improves antitumor activity. Mol Ther. Oct. 2012;20(10):1871-81. doi: 10.1038/mt.2012.113. Epub Jun. 12, 2012. PMID: 226… [cited by applicant]
Lim, HSV-1 as a Model for Emerging Gene Delivery Vehicles. International Scholarly Research Notices. 2013;2013: Article ID 397243, 12. [cited by applicant]
Marshall et al., Long-term transgene expression in mice infected with a herpes simplex virus type 1 mutant severely impaired for immediate-early gene expression. J Virol. Jan. 2000;74(2):956-64. doi: 10.1128/jvi.74.2.95… [cited by applicant]
Peters et al., Designing Herpes Viruses as Oncolytics. Mol Ther Oncolytics. 2015;2:15010-. doi: 10.1038/mto.2015.10. Epub Jul. 22, 2015. PMID: 26462293; PMCID: PMC4599707. [cited by applicant]
Smiley et al., Truncation of the C-terminal acidic transcriptional activation domain of herpes simplex virus VP16 produces a phenotype similar to that of the in1814 linker insertion mutation. [cited by applicant]
J Virol. Aug. 1997;71(8):6191-3. doi: 10.1128/JVI.71.8.6191-6193.1997. PMID: 9223515; PMCID: PMC191881. [cited by applicant]
Agarwalla et al., Oncolytic herpes simplex virus engineering and preparation. Methods Mol Biol. 2012;797:1-19. [cited by applicant]
Bartel, MicroRNAs: target recognition and regulatory functions. Cell. Jan. 23, 2009;136(2):215-33. [cited by applicant]
Berger et al., Expression of herpes simplex virus ICP47 and human cytomegalovirus US11 prevents recognition of transgene products by CD8(+) cytotoxic T lymphocytes. J Virol. May 2000;74(10):4465-73. [cited by applicant]
Chen et al., ICP27 recruits Aly/REF but not TAP/NXF1 to herpes simplex virus type 1 transcription sites although TAP/NXF1 is required for ICP27 export. J Virol. Apr. 2005;79(7):3949-61. [cited by applicant]
Chen et al., ICP27 interacts with the RNA export factor Aly/REF to direct herpes simplex virus type 1 intronless mRNAs to the TAP export pathway. J Virol. Dec. 2002;76(24):12877-89. [cited by applicant]
Corbin-Lickfett et al., The HSV-1 ICP27 RGG box specifically binds flexible, GC-rich sequences but not G-quartet structures. Nucleic Acids Res. Nov. 2009;37(21):7290-301. [cited by applicant]
Dai-Ju et al., ICP27 interacts with the C-terminal domain of RNA polymerase II and facilitates its recruitment to herpes simplex virus 1 transcription sites, where it undergoes proteasomal degradation during infection. … [cited by applicant]
Demuth et al., Polymer multilayer tattooing for enhanced DNA vaccination. Nat Mater 2013; 12:367-6. [cited by applicant]
Deshmane et al., During latency, herpes simplex virus type 1 DNA is associated with nucleosomes in a chromatin structure. J Virol. Feb. 1989;63(2):943-7. [cited by applicant]
Ellison et al., Control of VP16 translation by the herpes simplex virus type 1 immediate-early protein ICP27. J Virol. Apr. 2005;79(7):4120-31. [cited by applicant]
Fontaine-Rodriguez et al., Proteomics of herpes simplex virus infected cell protein 27: association with translation initiation factors. Virology. Dec. 20, 2004;330(2):487-92. [cited by applicant]
Garcia-Sastre. Ten Strategies of Interferon Evasion by Viruses. Cell Host Microbe. Aug. 9, 2017;22(2):176-184. [cited by applicant]
Goldsmith et al., Infected cell protein (ICP)47 enhances herpes simplex virus neurovirulence by blocking the CD8+ T cell response. J Exp Med. Feb. 2, 1998;187(3):341-8. [cited by applicant]
Griffiths-Jones. The microRNA Registry. Nucleic Acids Res. Jan. 1, 2004;32(Database issue):D109-11. [cited by applicant]
Griffiths-Jones et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. Jan. 1, 2006;34(Database issue):D140-4. [cited by applicant]
Griffiths-Jones et al., miRBase: tools for microRNA genomics. Nucleic Acids Res. Jan. 2008;36(Database issue):D154-8. doi: 10.1093/nar/gkm952. Epub Nov. 8, 2007. [cited by applicant]
Gu et al., Components of the REST/CoREST/histone deacetylase repressor complex are disrupted, modified, and translocated in HSV-1-infected cells. Proc Natl Acad Sci U S A. May 24, 2005;102(21):7571-6. doi: 10.1073/pnas.… [cited by applicant]
Herrlinger et al., HSV-1 infected cell proteins influence tetracycline-regulated transgene expression. J Gene Med. Sep.-Oct. 2000;2(5):379-89. [cited by applicant]
Honess et al., Proteins specified by herpes simplex virus. XI. Identification and relative molar rates of synthesis of structural and nonstructural herpes virus polypeptides in the infected cell. J Virol. Dec. 1973;12(6… [cited by applicant]
Kozomara et al., miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. Jan. 2014;42(Database issue):D68-73. doi: 10.1093/nar/gkt1181. Epub Nov. 25, 2013. [cited by applicant]
Kozomara et al., miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. Jan. 2011;39(Database issue):D152-7. doi: 10.1093/nar/gkq1027. Epub Oct. 30, 2010. [cited by applicant]
Medzhitov et al., Innate immunity: impact on the adaptive immune response. Curr Opin Immunol. Feb. 1997;9(1):4-9. [cited by applicant]
Miki et al., Efficient Detection and Purification of Cell Populations Using Synthetic MicroRNA Switches. Cell Stem Cell. Jun. 4, 2015;16(6):699-711. [cited by applicant]
Netea et al., Trained Immunity: An Ancient Way of Remembering. Cell Host Microbe. Mar. 8, 2017;21(3):297-300. [cited by applicant]
Olesky et al., Evidence for a direct interaction between HSV-1 ICP27 and ICP8 proteins. Virology. Jan. 5, 2005;331(1):94-105. [cited by applicant]
Pinnoji et al., Repressor element-1 silencing transcription factor/neuronal restrictive silencer factor (REST/NRSF) can regulate HSV-1 immediate-early transcription via histone modification. Virol J. Jun. 7, 2007;4:56. [cited by applicant]
Re, Synthetic Gene Expression Circuits for Designing Precision Tools in Oncology. Front Cell Dev Biol. Aug. 28, 2017;5:77. [cited by applicant]
Rivella et al., The cHS4 insulator increases the probability of retroviral expression at random chromosomal integration sites. J Virol. May 2000;74(10):4679-87. doi: 10.1128/jvi.74.10.4679-4687.2000. [cited by applicant]
Roizman et al., The first 30 minutes in the life of a virus: unREST in the nucleus. Cell Cycle. Aug. 2005;4(8):1019-21. doi: 10.4161/cc.4.8.1902. Epub Aug. 7, 2005. [cited by applicant]
Sandri-Goldin, ICP27 mediates HSV RNA export by shuttling through a leucine-rich nuclear export signal and binding viral intronless RNAs through an RGG motif. Genes Dev. Mar. 15, 1998;12(6):868-79. [cited by applicant]
Sciabica et al., ICP27 interacts with SRPK1 to mediate HSV splicing inhibition by altering SR protein phosphorylation. EMBO J. Apr. 1, 2003;22(7):1608-19. [cited by applicant]
Sedlackova et al., Herpes simplex virus type 1 immediate-early protein ICP27 is required for efficient incorporation of ICPO and ICP4 into virions. J Virol. Jan. 2008;82(1):268-77. doi: 10.1128/JVI.01588-07. Epub Oct. 2… [cited by applicant]
Souki et al., Arginine methylation of the ICP27 RGG box regulates the functional interactions of ICP27 with SRPK1 and Aly/REF during herpes simplex virus 1 infection. J Virol. Sep. 2009;83(17):8970-5. doi: 10.1128/JVI.0… [cited by applicant]
Van Craenenbroeck et al., Episomal vectors for gene expression in mammalian cells. Eur J Biochem. Sep. 2000;267(18):5665-78. [cited by applicant]
West et al., Insulators: many functions, many mechanisms. Genes Dev. Feb. 1, 2002;16(3):271-88. [cited by applicant]
Xie et al., Multi-input RNAi-based logic circuit for identification of specific cancer cells. Science. Sep. 2, 2011;333(6047):1307-11. [cited by applicant]
Yao et al., An activity specified by the osteosarcoma line U2OS can substitute functionally for ICP0, a major regulatory protein of herpes simplex virus type 1. J Virol. Oct. 1995;69(10):6249-58. [cited by applicant]
Zhou et al., Association of herpes simplex virus type 1 ICP8 and ICP27 proteins with cellular RNA polymerase II holoenzyme. J Virol. Jun. 2002;76(12):5893-904. [cited by applicant]