IP Library Granted Patent US 12,241,839
Granted Patent B2
US 12,241,839 · App. 17/105,925 · Granted Mar 4, 2025

Multipartite luciferase peptides and polypeptides

Inventors: Virginia Kincaid (Madison, WI); Lance P. Encell (Madison, WI); Mary Hall (Madison, WI); Michael Killoran (Madison, WI); Keith Wood (Madison, WI); Melanie Dart (Madison, WI); Trish Hoang (Madison, WI)
Assignee: Promega Corporation
G01N21/763C12N9/0069G01N33/582
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Quick Facts
Patent No.
US 12,241,839
App. No.
17/105,925
Granted
Mar 4, 2025
Kind
B2
Abstract

Provided herein are bioluminescent polypeptides and compositions and methods for the assembly of a tripartite or multipartite bioluminescent complex. In particular embodiments, a bioluminescent complex is formed upon the interaction of three or more peptide and/or polypeptide components.

Claims (18)

1. A system or kit comprising two or more peptide and/or polypeptide components collectively comprising 100% sequence identity to SEQ ID NO: 788 or SEQ ID NO: 789; wherein the two or more peptide and/or polypeptide components are capable of forming a bioluminescent complex upon interacting with each other; wherein a bioluminescent signal produced by the bioluminescent complex in the presence of a coelenterazine or a coelenterazine analog substrate is substantially increased when compared to a bioluminescent signal produced by one of the peptide and/or polypeptide components individually in the presence of the coelenterazine substrate; wherein the system or kit comprises a polypeptide that corresponds structurally to 8 or fewer β strands of a Oplophorus gracilirostris luciferase.

2. The system or kit of claim 1 , comprising a polypeptide component having 100% sequence identity to SEQ ID NO: 790 and one or more complementary peptides collectively having 100% sequence identity to SEQ ID NO: 794.

3. The system or kit of claim 1 , wherein the polypeptide comprises 100% sequence identity to SEQ ID NO: 791 and the one or more complementary peptides collectively comprise 100% sequence identity to SEQ ID NO: 795.

4. The system or kit of claim 1 , wherein the polypeptide comprises 100% sequence identity to SEQ ID NO: 792 and the one or more complementary peptides collectively comprise 100% sequence identity to SEQ ID NO: 796.

5. The system or kit of claim 1 , wherein the polypeptide comprises 100% sequence identity to SEQ ID NO: 793 and the one or more complementary peptides collectively comprise 100% sequence identity to SEQ ID NO: 797.

6. The system or kit of claim 1 , wherein the polypeptide comprises 100% sequence identity to SEQ ID NO: 790 and the one or more complementary peptides collectively comprise 100% sequence identity to SEQ ID NO: 798.

7. The system or kit of claim 1 , wherein the polypeptide comprises 100% sequence identity to SEQ ID NO: 791 and the one or more complementary peptides collectively comprise 100% sequence identity to SEQ ID NO: 799.

8. The system or kit of claim 1 , wherein the polypeptide comprises 100% sequence identity to SEQ ID NO: 792 and the one or more complementary peptides collectively comprise 100% sequence identity to SEQ ID NO: 800.

9. The system or kit of claim 1 , wherein the polypeptide comprises 100% sequence identity to SEQ ID NO: 793 and the one or more complementary peptides collectively comprise 100% sequence identity to SEQ ID NO: 801.

10. The system or kit of claim 1 , wherein one or more of the polypeptide and/or peptide components are present as fusions with one or more additional amino acid sequences.

11. The system or kit of claim 10 , wherein the additional amino acid sequence is selected from the group consisting of a protein of interest, an interaction element, a co-localization element, and a binding moiety.

12. The system or kit of claim 10 , wherein the additional amino acid sequence is a binding moiety selected from the group consisting of antibody (polyclonal, monoclonal, and/or recombinant), antibody fragment, protein A, an Ig binding domain of protein A, protein G, an Ig binding domain of protein G, protein A/G, an Ig binding domain of protein A/G, protein L, an Ig binding domain of protein L, protein M, an Ig binding domain of protein M, oligonucleotide probe, peptide nucleic acid, DARPin, aptamer, affimer, a purified protein (either the analyte itself or a protein that binds to the analyte), and analyte binding domain(s) of proteins.

13. The system or kit of claim 10 , wherein the additional amino acid sequence is a first interaction polypeptide that is configured to form a complex with a second interaction polypeptide upon contact of the first interaction polypeptide and the second interaction polypeptide.

14. The system or kit of claim 10 , wherein the additional amino acid sequence is a first co-localization polypeptide that is configured to co-localize within a cellular compartment, a cell, a tissue, or an organism within a with a second co-localization polypeptide.

15. The system or kit of claim 10 , wherein the additional amino acid sequence is a protein of interest and is a candidate drug target.

16. A bioluminescent complex comprising the two or more peptide and/or polypeptide components of the system or kit of claim 1 .

17. A method comprising contacting the bioluminescent complex of claim 16 with a substrate for the bioluminescent complex.

18. The method of claim 17 wherein the substrate is coelenterazine or furimazine.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 13, 2022
From: DART, MELANIE; HOANG, TRISH
To: PROMEGA CORPORATION
Reel/Frame 061071/0178 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 14, 2021
From: KINCAID, VIRGINIA; ENCELL, LANCE P; HALL, MARY; KILLORAN, MICHAEL; WOOD, KEITH
To: PROMEGA CORPORATION
Reel/Frame 056247/0943 →
Continuity (2)
Provisional Application 62941255 · Nov 27, 2019
Related Publication 20210262941A1 · Aug 26, 2021
References Cited (70)
US 4946778A · Ladner et al. · 1990 [cited by applicant]
US 5260203A · Ladner et al. · 1993 [cited by applicant]
US 8669103B2 · Binkowski et al. · 2014 [cited by applicant]
US 8697359B1 · Zhang · 2014 [cited by applicant]
US 9487520B2 · Klaubert et al. · 2016 [cited by applicant]
US 9797889B2 · Dixon et al. · 2017 [cited by applicant]
US 9797890B2 · Dixon et al. · 2017 [cited by applicant]
US 9908918B2 · Lin et al. · 2018 [cited by applicant]
US 20080248511A1 · Daily et al. · 2008 [cited by applicant]
US 20100281552A1 · Encell et al. · 2010 [cited by applicant]
US 20120107849A1 · Klaubert et al. · 2012 [cited by applicant]
US 20120174242A1 · Binkowski et al. · 2012 [cited by applicant]
US 20130317207A1 · Kirkland et al. · 2013 [cited by applicant]
US 20140068797A1 · Doudna et al. · 2014 [cited by applicant]
US 20140099654A1 · Cali et al. · 2014 [cited by applicant]
US 20150152395A1 · Branchini · 2015 [cited by applicant]
US 20160282360A1 · Dart et al. · 2016 [cited by applicant]
US 20170233789A1 · Shakhmin et al. · 2017 [cited by applicant]
US 20180030059A1 · Hall et al. · 2018 [cited by applicant]
US 20180172692A1 · Dixon et al. · 2018 [cited by applicant]
US 20190352623A1 · Dixon et al. · 2019 [cited by applicant]
US 20190383808A1 · Javitch · 2019 [cited by examiner]
WO WO198801649 · 1988 [cited by applicant]
WO WO199306868 · 1993 [cited by applicant]
WO WO199408629 · 1994 [cited by applicant]
WO WO199409056 · 1994 [cited by applicant]
WO WO199626754 · 1996 [cited by applicant]
WO WO2003040100 · 2003 [cited by applicant]
WO WO2012061529 · 2012 [cited by applicant]
WO WO2013177255 · 2013 [cited by applicant]
WO WO2016127100 · 2016 [cited by applicant]
WO WO2017189751 · 2017 [cited by applicant]
WO WO2019164402 · 2019 [cited by applicant]
WO WO2019241438 · 2019 [cited by applicant]
WO WO2020210658 · 2020 [cited by applicant]
Lisette G.G.C. Verhoef, Michela Mattioli, Fernanda Ricci, Yao-Cheng Li, Mark Wade, Multiplex detection of protein-protein interactions using a next generation luciferase reporter, 2016, Biochimica et Biophysica Acta, vo… [cited by examiner]
Barrangou et al., CRISPR provides acquired resistance against viruses in prokaryotes. Science. Mar. 23, 2007;315(5819):1709-12. [cited by applicant]
Bhaya et al., CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet. 2011;45:273-97. [cited by applicant]
Bolotin et al., Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology (Reading). Aug. 2005;151(Pt 8):2551-2561. [cited by applicant]
Boutureira et al., Advances in chemical protein modification. Chem Rev. Mar. 11, 2015;115(5):2174-95. [cited by applicant]
Brouns et al., Small CRISPR RNAs guide antiviral defense in prokaryotes. Science. Aug. 15, 2008;321(5891):960-4. [cited by applicant]
Cong et al., Multiplex genome engineering using CRISPR/Cas systems. Science. Feb. 15, 2013;339(6121):819-23. [cited by applicant]
Deltcheva et al., CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature. Mar. 31, 2011;471(7340):602-7. [cited by applicant]
Deveau et al., CRISPR/Cas system and its role in phage-bacteria interactions. Annu Rev Microbiol. 2010;64:475-93. [cited by applicant]
Garneau et al., The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature. Nov. 4, 2010;468(7320):67-71. [cited by applicant]
Gasiunas et al, Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci U S A. Sep. 25, 2012;109(39):E2579-86. [cited by applicant]
Hale et al., RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell. Nov. 25, 2009;139(5):945-56. [cited by applicant]
Horvath et al., CRISPR/Cas, the immune system of bacteria and archaea. Science. Jan. 8, 2010;327(5962):167-70. [cited by applicant]
Huang et al., Production of Gene-Corrected Adult Beta Globin Protein in Human Erythrocytes Differentiated from Patient iPSCs After Genome Editing of the Sickle Point Mutation. Stem Cells. May 2015;33(5):1470-9. [cited by applicant]
Hudson et al., Engineered antibodies. Nat Med. Jan. 2003;9(1):129-34. [cited by applicant]
Inagaki et al., Genetically encoded bioluminescent voltage indicator for multi-purpose use in wide range of bioimaging. Sci Rep. Feb. 13, 2017;7:42398. [cited by applicant]
Isidro-Llobet et al., Amino acid-protecting groups. Chem Rev. Jun. 2009;109(6):2455-504. [cited by applicant]
Jinek et al., A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science. Aug. 17, 2012;337(6096):816-21. [cited by applicant]
Koniev et al., Developments and recent advancements in the field of endogenous amino acid selective bond forming reactions for bioconjugation. Chem Soc Rev. Aug. 7, 2015;44(15):5495-551. [cited by applicant]
Makarova et al., A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of act… [cited by applicant]
Makarova et al., Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol. Jun. 2011;9(6):467-77. [cited by applicant]
Mali et al., RNA-guided human genome engineering via Cas9. Science. Feb. 15, 2013;339(6121):823-6. [cited by applicant]
Marraffini et al., CRISPR interference limits horizontal gene transfer in [cited by applicant]
Mojica et al., Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol. Feb. 2005;60(2):174-82. [cited by applicant]
Patterson et al., Finding the right (bioorthogonal) chemistry. ACS Chem Biol. Mar. 21, 2014;9(3):592-605. [cited by applicant]
Pourcel et al., CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology (Reading). Mar. 2005;151(Pt 3):653-… [cited by applicant]
Sapranauskas et al., The [cited by applicant]
Schaub et al., Fluorophore-NanoLuc® BRET Reporters Enable Sensitive In Vivo Optical Imaging and Flow Cytometry for Monitoring Tumorigenesis. Cancer Res. Dec. 1, 2015;75(23):5023-33. [cited by applicant]
Smith et al., Efficient and allele-specific genome editing of disease loci in human iPSCs. Mol Ther. Mar. 2015;23(3):570-7. [cited by applicant]
Suzuki et al., Five colour variants of bright luminescent protein for real-time multicolour bioimaging. Nat Commun. Dec. 14, 2016;7:13718. [cited by applicant]
Tomalia et al., Starburst Dendrimers: Molecular-Level Control of Size, Shape, Surface Chemistry, Topology, and Flexibility from Atoms to Macroscopic Matter. Angew. Chem. Int. Ed. Engl. 1990;29:138-175. [cited by applicant]
Xiao-Jie et al., CRISPR-Cas9: a new and promising player in gene therapy. J Med Genet. May 2015;52(5):289-96. [cited by applicant]
Xie et al., Seamless gene correction of β-thalassemia mutations in patient-specific iPSCs using CRISPR/Cas9 and piggyBac. Genome Res. Sep. 2014;24(9):1526-33. [cited by applicant]
International Search Report and Written Opinion, for PCT/US2020/062499, mailed May 19, 2021, 35 pgs. [cited by applicant]
Office Action for Chinese Application No. 202080095195.6, mailed Jan. 9, 2024 (9 pages). [cited by applicant]