IP Library › Granted Patent US 12,285,491
Granted Patent B2
US 12,285,491 · App. 17/835,081 · Granted Apr 29, 2025

Conjugation linkers, cell binding molecule-drug conjugates containing the linkers, methods of making and uses such conjugates with the linkers

Inventors: Yongxin Robert Zhao (Hangzhou, CN); Qingliang Yang (Hangzhou, CN); Yuanyuan Huang (Hangzhou, CN); Shun Gai (Hangzhou, CN); Hangbo Ye (Hangzhou, CN); Linyao Zhao (Hangzhou, CN); Chengyu Yang (Hangzhou, CN); Huihui Guo (Hangzhou, CN); Xiaomai Zhou (Hangzhou, CN); Hongsheng Xie (Hangzhou, CN); Haifeng Zhu (Hangzhou, CN); Yifang Xu (Hangzhou, CN); Qianqian Tong (Hangzhou, CN); Junxiang Jia (Hangzhou, CN); Minjun Cao (Hangzhou, CN); Wenjun Li (Hangzhou, CN); Shuihong Gao (Hangzhou, CN); Zhixiang Guo (Hangzhou, CN); Lu Bai (Hangzhou, CN); Chen Li (Hangzhou, CN); Yanlei Yang (Hangzhou, CN); Chunyan Wang (Hangzhou, CN); Zhichang Ye (Hangzhou, CN)
Assignee: HANGZHOU DAC BIOTECH CO., LTD.
A61K47/6803A61K47/68031A61K47/68035A61K47/6829A61K47/6831A61K47/6855A61K47/6863A61K47/6883A61K47/6889
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,285,491
App. No.
17/835,081
Granted
Apr 29, 2025
Kind
B2
Abstract

The present invention relates to linkers having a group of propiolyl, substituted acryl (acryloyl), or disubstituted propanoyl, and using such linkers for the conjugation of compounds, in particular, cytotoxic agents to a cell-binding molecule.

Claims (23)

1. A compound of Formula (XVII) or (XVIII):

wherein

represent a single bond, and “ ” can be an enantiomer or stereoisomer bond when linked to a single or a double bond;

represents either a single bond, or a double bond, or a triple bond;

provided that when represents a single bond, both Lv 1 and Lv 2 are not H; when represents a double bond, either Lv 1 or Lv 2 can be H, but they are not H at the same time; when represents a triple bond, Lv 1 is absent and Lv 2 can optionally be H;

Lv 1 and Lv 2 represent H or same or different leaving group that is optionally substituted by a thiol, and the leaving group is selected from the group consisting of a halide (selected from, fluoride, chloride, bromide, and iodide), methanesulfonyl (mesyl), toluenesulfonyl (tosyl), trifluoromethyl-sulfonyl (triflate), trifluoromethylsulfonate, nitrophenoxyl, N-succinimidyloxyl (NHS), phenoxyl; dinitrophenoxyl; pentafluorophenoxyl, tetrafluorophenoxyl, trifluorophenoxyl, difluorophenoxyl, monofluorophenoxyl, pentachlorophenoxyl, 1H-imidazole-1-yl, chlorophenoxyl, dichlorophenoxyl, trichlorophenoxyl, tetrachlorophenoxyl, N-(benzotriazol-yl) oxyl, 2-ethyl-5-phenylisoxazolium-3′-sulfonyl, phenyloxadiazole-sulfonyl (-sulfone-ODA), 2-ethyl-5-phenylisoxazoliumyl, phenyloxadiazolyl (ODA), or oxadiazolyl

R 1 is a combination of two or more of C 1 -C 8 alkyl; C 2 -C 8 amide and polyethyleneoxy unit of formula (OCH 2 CH 2 ) p or (OCH 2 CH(CH 3 )) p , wherein p is an integer from 1 to about 1000;

T is

wherein is the site of linkage,

m 1 , m 2 , m 3 , m 4 and m 5 are independently an integer from 1 to 10,

L 1 , L 2 , and X 1 , are absent; and

Drug is a selected from the group consisting of tubulysins, calicheamicins, auristatins, maytansinoids, CC-1065 compounds, daunorubicins, doxorubicins, taxanoids (taxanes), cryptophycins, epothilones, benzodiazepine dimers, calicheamicins and enediyne antibiotics, actinomycins, amanitins, azaserines, bleomycins, epirubicins, tamoxifen, idarubicin, dolastatins, auristatins, duocarmycins, geldanamycins, methotrexates, thiotepa, vindesines, vincristines, hemiasterlins, nazumamides, microginins, radiosumins, alterobactins, microsclerodermins, theonellamides, esperam1cms, siRNA, miRNA, piRNA, nucleolytic enzymes, and pharmaceutically acceptable salts and acids of any of the above molecules.

2. The compound according to claim 1 having one of 13, 17, 27, 31, 44, 52, 82, 85, 123, 166, 172, 267, 272, 280, 288, 292, 295, 312, 314, 493, 495, 497, 499, 505 and 507 as shown in below:

wherein , and Drug are defined the same as in claim 1 ; L is absent.

3. The compound of claim 1 , wherein represents a single bond, and Lv 1 and Lv 2 represent Br or I.

4. The compound of claim 1 , wherein represents a double bond, and Lv 1 and Lv 2 represent H or Br.

5. The compound of claim 1 , wherein represents a triple bond, and Lv 2 represent H.

6. The compound of claim 1 , wherein R 1 is *—C 1 -C 8 alkyl-CONH(CH 2 CH 2 O) p —C 1 -C 8 alkyl-CONH-C 1 -C 8 alkyl-CONH-**, p is an integer from 1 to 1000,* is a linking site to T and ** is a linking site to Drug.

7. The compound of claim 6 , wherein R 1 is *—C 1 -C 8 alkyl-CONH(CH 2 CH 2 O) p CH 2 CH 2 CONH(CH(CH 3 ) 2 )CONH—**.

8. The compound of claim 1 , wherein R 1 is *—C 1 -C 8 alkyl-CONH(CH 2 CH 2 O) p —C 1 -C 8 alkyl-CONH-**, p is an integer from 1 to 1000, * is a linking site to T and ** is a linking site to Drug.

9. The compound of claim 1 , wherein m 1 , m 2 , m 3 , and ms are independently an integer from 1 to 10, m 4 is 2.

10. The compound of claim 1 , wherein m 1 , m 3 and m 5 are 1, m 2 and m 4 is 1.

11. The compound of claim 1 , wherein Drug is a benzodiazepine dimer.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 8, 2022
From: ZHAO, YONGXIN ROBERT; YANG, QINGLIANG; HUANG, YUANYUAN; GAI, SHUN; YE, HANGBO; ZHAO, LINYAO; YANG, CHENGYU; GUO, HUIHUI; ZHOU, XIAOMAI; XIE, HONGSHENG; ZHU, HAIFENG; XU, YIFANG; TONG, QIANQIAN; JIA, JUNXIANG; CAO, MINJUN; LI, WENJUN; GAO, SHUIHONG; GUO, ZHIXIANG; BAI, LU; LI, CHEN; YANG, YANLEI; WANG, CHUNYAN; YE, ZHICHANG
To: HANGZHOU DAC BIOTECH CO., LTD.
Reel/Frame 060133/0265 →
Continuity (2)
Division 16348749
Related Publication 20220313836A1 · Oct 6, 2022
References Cited (118)
US 6087328A · Lees · 2000 [cited by applicant]
US 20070213278A1 · Wong et al. · 2007 [cited by applicant]
US 20100009902A1 · Defrees · 2010 [cited by applicant]
US 20100047257A1 · Blanc · 2010 [cited by examiner]
US 20100143387A1 · Kraehmer et al. · 2010 [cited by applicant]
US 20120035115A1 · Manoharan et al. · 2012 [cited by applicant]
US 20120225089A1 · Bouchard et al. · 2012 [cited by applicant]
US 20140249319A1 · Nguyen · 2014 [cited by applicant]
US 20150152190A1 · Barnett et al. · 2015 [cited by applicant]
US 20150250896A1 · Zhao · 2015 [cited by applicant]
US 20150314017A1 · Zhao · 2015 [cited by applicant]
US 20160272669A1 · Wang et al. · 2016 [cited by applicant]
US 20190117790A1 · Song et al. · 2019 [cited by applicant]
US 20200079820A1 · Zhao et al. · 2020 [cited by applicant]
US 20200079850A1 · Stafford et al. · 2020 [cited by applicant]
US 20210308277A1 · Zhao et al. · 2021 [cited by applicant]
US 20220313837A1 · Zhao et al. · 2022 [cited by applicant]
US 20220313838A1 · Zhao et al. · 2022 [cited by applicant]
US 20220323602A1 · Zhao et al. · 2022 [cited by applicant]
US 20230071112A1 · Zhao et al. · 2023 [cited by applicant]
CN 101616691A · 2009 [cited by applicant]
CN 105641707A · 2016 [cited by applicant]
CN 105849086A · 2016 [cited by applicant]
CN 109689107A · 2019 [cited by applicant]
EP 1838332A1 · 2007 [cited by applicant]
EP 3445401A1 · 2019 [cited by applicant]
JP 2002504096A · 2002 [cited by applicant]
JP 2008526864A · 2008 [cited by applicant]
JP 2010519182A · 2010 [cited by applicant]
JP 2011058001A · 2011 [cited by applicant]
JP 2012531459A · 2012 [cited by applicant]
JP 2015521590A · 2015 [cited by applicant]
JP 2015533832A · 2015 [cited by applicant]
JP 2016501859A · 2016 [cited by applicant]
JP 2019515907A · 2019 [cited by applicant]
JP 7138350B2 · 2022 [cited by applicant]
JP 7295640B2 · 2023 [cited by applicant]
KR 20150023563A · 2015 [cited by applicant]
WO 9847530A2 · 1998 [cited by applicant]
WO 2010037179A1 · 2010 [cited by applicant]
WO 2014197854A1 · 2014 [cited by applicant]
WO 2015151080A2 · 2015 [cited by applicant]
WO 2015151081A2 · 2015 [cited by applicant]
WO WO2015155753A2 · 2015 [cited by examiner]
WO 2016057936A1 · 2016 [cited by applicant]
WO 2016059622A2 · 2016 [cited by applicant]
WO 2016164580A1 · 2016 [cited by applicant]
WO 2017046658A1 · 2017 [cited by applicant]
Carey, FA. Organic Chemistry 6th Ed. McGraw Hill. 2006, chapter 1, p. 9 (Year: 2006). [cited by examiner]
Database Caplus Chemical Abstracts Service, Columbus, Ohio, US; Registry No. 1001321-52-3, N-[3,5-bis[[[(11aS)-2,3,5,11a-tetrahydro-7-methoxy-2methylene-5-oxo-1H-pyrrolo[2, 1-c][1,4]benzodiazepin-8-yl]oxy]methyl]phenyl]… [cited by examiner]
Office Action issued on May 3, 2023, by the Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036868, and an English Translation of the Office Action. (15 pages). [cited by applicant]
Office Action (Examination Search Report) issued on Feb. 24, 2023, by the Canadian Intellectual Property Office in Canadian Patent Application No. 3,042,442 (6 pages). [cited by applicant]
Office Action issued on Aug. 4, 2023, by the U.S. Patent and Trademark Office in U.S. Appl. No. 16/348,749, U.S. Patent and Trademark Office, Alexandria, VA. (16 pages). [cited by applicant]
Notice of Grant for Patent issued on Aug. 10, 2023, by the Australian Patent Office in corresponding AU Patent No. 2021200562 (1 page). [cited by applicant]
Notification to Grant Patent Right for Invention issued on Feb. 9, 2023, by the State Intellectual Property Office of People's Republic of China in corresponding CN Application No. 201680090956.2, and English translatio… [cited by applicant]
Office Action (Examination Report) issued on Aug. 12, 2024, by the Australian Patent Office in corresponding AU Application No. 2023203116 (4 pages). [cited by applicant]
Office Action issued on Aug. 17, 2022, by the State Intellectual Property Office of People's Republic of China in corresponding CN Application No. 201680090956.2, and English translation of the Office Action (9 pages). [cited by applicant]
Office Action issued on Aug. 6, 2021, by the State Intellectual Property Office of People's Republic of China in corresponding CN Application No. 201680090956.2, and English translation of the Office Action and Search R… [cited by applicant]
Office Action issued on Feb. 25, 2022, by the State Intellectual Property Office of People's Republic of China in corresponding CN Application No. 201680090956.2, and English translation of the Office Action (11 pages). [cited by applicant]
Office Action issued on Jul. 9, 2024, by the Japanese Patent Office in corresponding JP Application No. 2022-136679, and English translation of the Office Action (7 pages). [cited by applicant]
Final Office Action issued on Jun. 12, 2024, by the U.S. Patent and Trademark Office in U.S. Appl. No. 16/348,749 (16 pages). [cited by applicant]
Office Action issued on Jan. 31, 2023, by the U.S. Patent and Trademark Office in U.S. Appl. No. 16/348,749, U.S. Patent and Trademark Office, Alexandria, VA. (33 pages). [cited by applicant]
Carey, F. A. Organic Chemistry, 6th Ed. McGraw Hill, 2006, chapter 1, 9 pages. [cited by applicant]
Chen, et al., “Determination of Drug-to-Antibody Ratio for Antibody-Drug Conjugates Purified from Serum”, Agilent Technologies, 2016, 10 pages. [cited by applicant]
Notice of acceptance for application issued on Apr. 13, 2023, by the Australian Government, IP Australia in corresponding Australian Patent Application No. 2021200562 (3 pages). [cited by applicant]
Notice of Final Rejection issued on Sep. 7, 2023, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036870, with English translation of the Notice (12 pages). [cited by applicant]
Notice of Final Rejection issued on Sep. 7, 2023, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036869, with English translation of the Request (12 pages). [cited by applicant]
Request for Submission of an Opinion issued on Oct. 13, 2023, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036868, with English translation of the Request (9 pages). [cited by applicant]
Request for Submission of an Opinion issued on Oct. 13, 2023, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036871, with English translation of the Request (9 pages). [cited by applicant]
Search Report by Registered Search Organization issued on Sep. 14, 2023, by Japanese Registered Search Organization in corresponding Japanese Patent Application No. 2022-136679, with English translation of the Search Re… [cited by applicant]
Notice of Reasons for Refusal issued on Oct. 3, 2023, by the Japanese Patent Office in corresponding Japanese Patent Application No. 2022-136679, with English translation of the Notice (17 pages). [cited by applicant]
Su, et al., “Azide-alkyne cycloaddition for universal post-synthetic modifications of nucleic acids and effective synthesis of bioactive nucleic acid conjugates,” Organic & Biomolecular Chemistry, 2014, 12 (34), 6624-66… [cited by applicant]
Li, et.al., “Poly(ethylene glycol) Conjugated Poly(lactide)-Based Polyelectrolytes: Synthesis and Formation of Stable Self-Assemblies Induced by Stereocomplexation,” Langmuir, 2015, 31 (8), 2321-2333. [cited by applicant]
Office Action issued on Oct. 17, 2023, by the U.S. Patent and Trademark Office in related U.S. Appl. No. 16/348,749, U.S. Patent and Trademark Office, Alexandria, VA (17 pages). [cited by applicant]
Notice of Final Rejection issued on Nov. 17, 2023, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036868 (2 pages). [cited by applicant]
Notice of Final Rejection issued on Nov. 17, 2023, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036871 (2 pages). [cited by applicant]
Office Action issued on Jan. 24, 2024, by the U.S. Patent and Trademark Office in U.S. Appl. No. 16/348,749 (17 pages). [cited by applicant]
Brandley et al., “Phosphorylation of Extracellular Carbohydrates by Intact Cells: Chicken Hepatocytes Specifically Adhere to and Phosphorylate Immobilized N-Acetylglucosamine,” The Journal of Biological Chemistry, Oct. … [cited by applicant]
Examination Report No. 1 issued on Feb. 4, 2020, by the Australian Patent Office in corresponding Australian Patent Application No. 2016429272. (21 pages). [cited by applicant]
Examination Report No. 2 issued on Nov. 20, 2020, by the Australian Patent Office in Australian Patent Application No. 2016429272. (9 pages). [cited by applicant]
Extended European Search Report issued on Sep. 7, 2021, by the European Patent Office in corresponding European Patent Application No. 21171676.6. (10 pages). [cited by applicant]
Grant of Patent issued on Oct. 25, 2021, by the Korean Patent Office in corresponding Korean Patent Application No. 10-2019-7017166 and an English translation of the Grant. (6 pages). [cited by applicant]
Griebenow et al., “Site-specific conjugation of peptides and proteins via rebridging of disulfide bonds using the thiol-yne coupling reaction,” Bioconjugate Chemistry, Mar. 31, 2016, vol. 27, No. 4, pp. 911-917. (Abstra… [cited by applicant]
International Search Report (PCT/ISA/210) issued on Apr. 18, 2017, by the Chinese Patent Office as the International Searching Authority for International Application No. PCT/CN2016/105799. (2 pages). [cited by applicant]
Japanese Search Report issued on Oct. 6, 2020, by the Japanese Patent Office in corresponding Japanese Patent Application No. 2019-524954 with an English translation of the Report. (21 pages). [cited by applicant]
Nakamura, Taku, “Crosslinking of gelatin by reactivepolymer: Effect of Polymer Structure on Gelation Time,” Contemporary Topics in Polymer Science, 1984, vol. 4, pp. 141-147. (8 pages). [cited by applicant]
Notice of Final Rejection issued on Jul. 13, 2021, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2019-7017166 and an English translation of the Notice. (37 pages). [cited by applicant]
Notice of Reasons for Refusal issued on Jul. 28, 2021, by the Japanese Patent Office in corresponding Japanese Patent Application No. 2019-524954 and an English translation of the Notice. (4 pages). [cited by applicant]
Notice of Reasons for Refusal issued on Oct. 6, 2020, by the Japanese Patent Office corresponding Japanese Patent Application No. 2019-524954 and an English translation of the Notice. (9 pages). [cited by applicant]
Notification of Reason for Refusal issued on Dec. 4, 2020, by the Korean Intellectual Property Office in corresponding Korean Patent Application No. 10-2019-7017166 and an English translation of the Notification. (44 pa… [cited by applicant]
Notification of Reasons for Refusal issued on Jan. 14, 2022, by the Korean Patent Office in corresponding Korean Patent Application No. 10-2021-7032859 and an English translation of the Notification. (15 pages). [cited by applicant]
Notification of Reasons for Refusal issued on Jan. 14, 2022, by the Korean Patent Office in corresponding Korean Patent Application No. 10-2021-7032860 and an English translation of the Notification. (15 pages). [cited by applicant]
Office Action issued on Feb. 23, 2021, by the Canadian Patent Office in corresponding Canadian Patent Application No. 3,042,442. (6 pages). [cited by applicant]
Office Action issued on Jul. 23, 2020, by the Canadian Patent Office in corresponding Canadian Patent Application No. 3,042,442. (6 pages). [cited by applicant]
Office Action issued on Nov. 4, 2021, by the Canadian Patent Office in corresponding Canadian Patent Application No. 3,042,442. (4 pages). [cited by applicant]
Patent Examination Report 3 issued on Jul. 2, 2021, by the New Zealand Patent Office in corresponding New Zealand Patent Application No. 752394. (1 page). [cited by applicant]
Pilkington-Miksa et al., “Design, synthesis, and biological evaluation of novel cRGD-paclitaxel conjugates for integrin-assisted drug delivery,” Bioconjugate chemistry (2012), vol. 23, No. 8, pp. 1610-1622. (13 pages). [cited by applicant]
The Extended European Search Report issued on Jun. 8, 2020, by the European Patent Office in corresponding European Patent Application No. 16921340.2. (7 pages). [cited by applicant]
The First Office Action issued on Aug. 3, 2021, by the State Intellectual Property Office of the People's Republic of China in corresponding Chinese Patent Application No. 201680090956.2. and an English translation of t… [cited by applicant]
Vilà et al., “Solid-Phase Synthesis of Peptide Conjugates Derived from the Antimicrobial Cyclic Decapeptide BPC 194,” European Journal of Organic Chemistry, (2015), vol. 5, pp. 1117-1129. (1 page). [cited by applicant]
Written Opinion issued on Apr. 18, 2017, by the State Intellectual Property Office of People's Republic of China in corresponding International Application No. PCT/CN2016/105799. (3 pages). [cited by applicant]
Yao et al., “Methods to Design and Synthesize Antibody-Drug Conjugates (ADCs),” International Journal of Molecular Sciences, Feb. 2, 2016, vol. 17, No. 2, p. 194. (1 page). [cited by applicant]
Yao et al., “Methods to Design and Synthesize Antibody-Drug Conjugates (ADCs),” International Journal of Molecular Sciences, 2016, vol. 17, pp. 1-16. (16 pages). [cited by applicant]
Zlatopolskiy et al., “Synthesis of 18F-Labelled β-Lactams Using the Kinugasa Reaction,” Chemistry: A European Journal, 2014, vol. 20, pp. 4697-4703. (7 pages). [cited by applicant]
Notification Concerning Transmittal of International Preliminary Report on Patentability (Chapter I of the Patent Cooperation Treaty) and International Preliminary Report on Patentability issued on May 14, 2019, by the … [cited by applicant]
Notice of Reasons for Refusal issued on Apr. 5, 2022, by the Japanese Patent Office in corresponding Japanese Patent Application No. 2019-524954 and an English translation of the Notice, (4 pages). [cited by applicant]
Examination Report No. 1 for standard patent application issued on Apr. 29, 2022, by the Australian Patent Office in corresponding Australian Patent Application No. 2021200562. (4 pages). [cited by applicant]
Office Action issued on May 13, 2022, by the Canadian Patent Office in corresponding Canadian Patent Application No. 3,042,442. (4 pages). [cited by applicant]
Decision to Grant a Patent issued on Aug. 2, 2022, by the Japanese Patent Office in corresponding Japanese Patent Application No. 2019-524954 and an English translation of the Decision. (6 pages). [cited by applicant]
Written Decision on Registration issued on Jul. 22, 2022, by the Korean Patent Office in corresponding Korean Patent Application No. 10-2021-7032859 and an English translation of the Decision. (6 pages). [cited by applicant]
Written Decision on Registration issued on Jul. 22, 2022, by the Korean Patent Office in corresponding Korean Patent Application No. 10-2021-7032860 and an English translation of the Decision. (6 pages). [cited by applicant]
Office Action (Request for the Submission of an Opinion) issued on Jan. 5, 2023, by the Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036870, and an English Translation of the Offi… [cited by applicant]
Office Action (Request for the Submission of an Opinion) issued on Jan. 5, 2023, by the Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036871, and an English Translation of the Offi… [cited by applicant]
Office Action (Request for the Submission of an Opinion) issued on Jan. 5, 2023, by the Intellectual Property Office in corresponding Korean Patent Application No. 10-2022-7036869, and an English Translation of the Offi… [cited by applicant]
Office Action issued on Oct. 24, 2024, by the U.S. Patent and Trademark Office in related U.S. Appl. No. 17/835,419 (32 pages). [cited by applicant]
Office Action issued on Oct. 25, 2024, by the U.S. Patent and Trademark Office in related U.S. Appl. No. 17/835,311 (24 pages). [cited by applicant]
Office Action issued on Oct. 29, 2024, by the U.S. Patent and Trademark Office in related U.S. Appl. No. 17/835,041 (35 pages). [cited by applicant]
Office Action issued on Oct. 31, 2024, by the U.S. Patent and Trademark Office in related U.S. Appl. No. 16/348,749 (18 pages). [cited by applicant]