US 5773700A
· Grinsven et al.
· 1998
[cited by applicant]
US 6096548A
· Stemmer
· 2000
[cited by applicant]
US 6482634B1
· Wilson et al.
· 2002
[cited by applicant]
US 6491907B1
· Rabinowitz et al.
· 2002
[cited by applicant]
US 6596539B1
· Stemmer et al.
· 2003
[cited by applicant]
US 6703237B2
· Samulski et al.
· 2004
[cited by applicant]
US 6710036B2
· Kurtzman et al.
· 2004
[cited by applicant]
US 6733757B2
· Patel et al.
· 2004
[cited by applicant]
US 6855314B1
· Chiorini et al.
· 2005
[cited by applicant]
US 6943153B1
· Manning, Jr. et al.
· 2005
[cited by applicant]
US 6962815B2
· Bartlett
· 2005
[cited by applicant]
US 7172893B2
· Rabinowitz et al.
· 2007
[cited by applicant]
US 7252997B1
· Hallek et al.
· 2007
[cited by applicant]
US 7254489B2
· Mossel
· 2007
[cited by applicant]
US 7285381B1
· Hallek et al.
· 2007
[cited by applicant]
US 7314912B1
· Hallek et al.
· 2008
[cited by applicant]
US 7368428B2
· Serrero
· 2008
[cited by applicant]
US 7427396B2
· Arbetman et al.
· 2008
[cited by applicant]
US 7556965B2
· Hallek et al.
· 2009
[cited by applicant]
US 7629322B2
· Kleinschmidt et al.
· 2009
[cited by applicant]
US 7749492B2
· Bartlett et al.
· 2010
[cited by applicant]
US 7892809B2
· Bowles et al.
· 2011
[cited by applicant]
US 7968340B2
· Hallek et al.
· 2011
[cited by applicant]
US 8263396B2
· Xiao
· 2012
[cited by applicant]
US 8524446B2
· Gao et al.
· 2013
[cited by applicant]
US 8574583B2
· Kay et al.
· 2013
[cited by applicant]
US 8632764B2
· Xiao et al.
· 2014
[cited by applicant]
US 8663624B2
· Schaffer et al.
· 2014
[cited by applicant]
US 9193956B2
· Schaffer et al.
· 2015
[cited by applicant]
US 9233131B2
· Schaffer et al.
· 2016
[cited by applicant]
US 9441244B2
· Schaffer et al.
· 2016
[cited by applicant]
US 9457103B2
· Schaffer et al.
· 2016
[cited by applicant]
US 9458517B2
· Schaffer et al.
· 2016
[cited by applicant]
US 9587282B2
· Schaffer et al.
· 2017
[cited by applicant]
US 9856539B2
· Schaffer et al.
· 2018
[cited by applicant]
US 9909142B2
· Yazicioglu et al.
· 2018
[cited by applicant]
US 20020136710A1
· Samulskl et al.
· 2002
[cited by applicant]
US 20030138772A1
· Gao et al.
· 2003
[cited by applicant]
US 20030143732A1
· Fosnaugh et al.
· 2003
[cited by applicant]
US 20030149235A1
· Baker et al.
· 2003
[cited by applicant]
US 20030171254A1
· Sasaki et al.
· 2003
[cited by applicant]
US 20050019927A1
· Hildinger et al.
· 2005
[cited by applicant]
US 20050106558A1
· Perabo et al.
· 2005
[cited by applicant]
US 20050148069A1
· Gage et al.
· 2005
[cited by applicant]
US 20060127358A1
· Muzyczka et al.
· 2006
[cited by applicant]
US 20060188483A1
· Rabinowitz et al.
· 2006
[cited by applicant]
US 20060292117A1
· Loiler et al.
· 2006
[cited by applicant]
US 20070172460A1
· Kleinschmidt et al.
· 2007
[cited by applicant]
US 20100166729A9
· Madison et al.
· 2010
[cited by applicant]
US 20100172871A1
· Flannery et al.
· 2010
[cited by applicant]
US 20110171262A1
· Bakker et al.
· 2011
[cited by applicant]
US 20110236353A1
· Wilson et al.
· 2011
[cited by applicant]
US 20120093772A1
· Horsager et al.
· 2012
[cited by applicant]
US 20130323302A1
· Constable et al.
· 2013
[cited by applicant]
US 20140364338A1
· Schaffer et al.
· 2014
[cited by applicant]
US 20180289757A1
· Schaffer et al.
· 2018
[cited by applicant]
US 20190169237A1
· Schaffer et al.
· 2019
[cited by applicant]
US 20200231942A1
· Schaffer et al.
· 2020
[cited by applicant]
US 20210077552A1
· Schaffer et al.
· 2021
[cited by applicant]
US 20210147876A1
· Ojala et al.
· 2021
[cited by applicant]
US 20220017876A1
· Schaffer et al.
· 2022
[cited by applicant]
US 20220243291A1
· Schaffer et al.
· 2022
[cited by applicant]
US 20220362409A1
· Schaffer et al.
· 2022
[cited by applicant]
US 20230321282A1
· Schaffer et al.
· 2023
[cited by applicant]
AU 2014331708
· 2016
[cited by applicant]
CA 2379220
· 2001
[cited by applicant]
CN 1325451A
· 2001
[cited by applicant]
CN 1826414A
· 2006
[cited by applicant]
CN 1966082A
· 2007
[cited by applicant]
CN 101484005A
· 2009
[cited by applicant]
CN 101532024A
· 2009
[cited by applicant]
CN 103561774A
· 2014
[cited by applicant]
CN 106232618A
· 2014
[cited by applicant]
JP 2008523813A
· 2008
[cited by applicant]
WO WO1997038723
· 1997
[cited by applicant]
WO WO1999067393
· 1999
[cited by applicant]
WO WO2000028004
· 2000
[cited by applicant]
WO WO2001070276
· 2001
[cited by applicant]
WO WO2002053703
· 2002
[cited by applicant]
WO WO2003018820
· 2003
[cited by applicant]
WO WO2003023032
· 2003
[cited by applicant]
WO WO2003054197
· 2003
[cited by applicant]
WO WO2003093436
· 2003
[cited by applicant]
WO WO2004083441
· 2004
[cited by applicant]
WO WO2004083411A1
· 2004
[cited by applicant]
WO WO2004108922
· 2004
[cited by applicant]
WO WO2004112727
· 2004
[cited by applicant]
WO WO2005005610
· 2005
[cited by applicant]
WO WO2005033321
· 2005
[cited by applicant]
WO WO2006066066
· 2006
[cited by applicant]
WO WO2006110689
· 2006
[cited by applicant]
WO WO2007120542
· 2007
[cited by applicant]
WO WO2008131951
· 2008
[cited by applicant]
WO WO2009137006
· 2009
[cited by applicant]
WO WO2009154452
· 2009
[cited by applicant]
WO WO2010093784
· 2010
[cited by applicant]
WO WO2010138263
· 2010
[cited by applicant]
WO WO2011117258
· 2011
[cited by applicant]
WO WO2012145601
· 2012
[cited by applicant]
WO WO2013029030
· 2013
[cited by applicant]
WO WO2013170078
· 2013
[cited by applicant]
WO WO2013173512
· 2013
[cited by applicant]
WO WO2014124282
· 2014
[cited by applicant]
WO WO2014194132
· 2014
[cited by applicant]
WO WO2014207190
· 2014
[cited by applicant]
WO WO2014200910
· 2014
[cited by applicant]
WO WO2015012501A1
· 2015
[cited by applicant]
WO WO2015048534
· 2015
[cited by applicant]
WO WO2015054653
· 2015
[cited by applicant]
WO WO2015121501
· 2015
[cited by applicant]
WO WO2015142941
· 2015
[cited by applicant]
WO WO2015191693
· 2015
[cited by applicant]
WO WO2016034375A1
· 2016
[cited by applicant]
WO WO2016134375
· 2016
[cited by applicant]
WO WO2016141078
· 2016
[cited by applicant]
WO WO2016144892
· 2016
[cited by applicant]
WO WO2017023724
· 2017
[cited by applicant]
WO WO2017197355
· 2017
[cited by applicant]
WO WO2019046069
· 2019
[cited by applicant]
Khabou et al. (2016) “Insight into the mechanisms of enhanced retinal transduction by the engineered AAV2 capsid variant—7m8” Biotechnology and bioengineering, 113(12), 2712-2724. (Year: 2016).
[cited by examiner]
Dalkara et al. (2013) “In vivo-directed evolution of a new adeno-associated virus for therapeutic outer retinal gene delivery from the vitreous” Science translational medicine, 5(189), 189ra76, 11 pages. (Year: 2013).
[cited by examiner]
Adachi, et al.; “A New Recombinant Adeno-Associated Virus (AAV)-Based Random Peptide Display Library System: Infection-Defective AAV1.9-3 as a Novel Detargeted Platform for Vector Evolution”; Gene Therapy and Regulation…
[cited by applicant]
Akiyama, et al.; “Intraocular Injection of an Aptamer that Binds PDGF-B: A Potential Treatment for Proliferative Retinopathies”; Journal of Cellular Physiology; vol. 207, pp. 407-412 (2006).
[cited by applicant]
Ali, et al.; “Restoration of photoreceptor ultrastructure and function in retinal degeneration slow mice by gene therapy”; Nature Genetics; vol. 25, pp. 306-310 (Jul. 2000).
[cited by applicant]
Allocca, et al.; “Novel adeno-associated virus serotypes efficiently transduce murine photoreceptors”; Journal of Virology; vol. 81, No. 20, pp. 11372-11380 (Oct. 2007).
[cited by applicant]
Asokan, et al., “Reengineering a receptor footprint of adeno-associated virus enables selective and systemic gene transfer to muscle”; Nat Biotechnol; vol. 28, No. 1, pp. 79-82 (Jan. 2010).
[cited by applicant]
Asuri, et al.; “Directed Evolution of Adena-associated Virus for Enhanced Gene Delivery and Gene Targeting in Human Pluripotent Stem Cells”; Molecular Therapy, vol. 20, No. 2, pp. 329-338 (Feb. 1, 2012).
[cited by applicant]
Bichsel, et al.; “Bacterial delivery of nuclear proteins into pluripotent and differentiated cells”; PLoS One; vol. 6, No. 1, pp. 1-9 (Jan. 2011).
[cited by applicant]
Blacklow, et al.; “A Seroepidemiologic Study of Adenovirus-Associated Virus Infection in Infants and Children”; Am J Epidemiol.; vol. 94, No. 4, pp. 359-366 (Oct. 1971).
[cited by applicant]
Boucas, et al.; “Engineering adeno-associated virus serotype 2-based targeting vectors using a new insertion site-position 453-and single point mutations”; J Gene Med.; vol. 11, No. 12, pp. 1103-1113 (Dec. 2009).
[cited by applicant]
Buch, et al., “in Contrast to AAC-Mediated Cntf Expression, AAV-Mediated Gdnf Expression Enhances Gene Replacement Therapy in Rodent Models of Retinal Degeneration”; Molecular Therapy; vol. 14, No. 5, pp. 700-709 (Nov. …
[cited by applicant]
Buning, et al., “Receptor targeting of adeno-associated virus vectors”; Gene Therapy; vol. 10, pp. 1142-1151 (2003).
[cited by applicant]
Chadderton, et al.; “Improved Retinal Function in a Mouse Model of Dominant Retinitis Pigmentosa Following AAV-delivered Gene Therapy”; Molecular Therapy; vol. 17, No. 4, pp. 593-599 (Apr. 2009).
[cited by applicant]
Choi, et al.; “AAV Hybrid Serotypes: Improved Vectors for Gene Delivery.”; Current Gene Therapy; vol. 5, No. 3, pp. 299-310 (Jun. 2005).
[cited by applicant]
Cronin, et al.; “Efficient transduction and optogenetic stimulation of retinal bipolar cells by a synthetic adeno-associated virus capsid and promoter”; EMBO Molecular Medicine; 16 pages (2014).
[cited by applicant]
Dalkara, et al.; “In Vivo-Directed Evolution of a New Adeno-Associated Virus for Therapeutic Outer Retinal Gene Delivery from the Vitreous”; Science Translational Medicine; vol. 5, Issue 187, 11 pages (Jun. 12, 2013).
[cited by applicant]
Dalkara, et al.; “Developing Photoreceptor Targeted AAV Variant by Directed Evolution”; ARVO Annual Meeting Abstract Search and Program Planner; vol. 2011, pp. 4381 (May 2011).
[cited by applicant]
Database Geneseq [Online] Oct. 16, 2008 (Oct. 16, 2008), “Modified Adena-associated virus (hu.44) capsid protein, VP1, hu.44R2.”, retrieved from EBI accession No. GSP:AEL63853, Database accession No. AEL63853.
[cited by applicant]
Database Geneseq [Online] Oct. 16, 2008 (Oct. 16, 2008), “Modified Adena-associated virus (hu.44) capsid protein, VP1, hu.44R3.”, retrieved from EBI accession No. GSP:AEL63854, Database accession No. AEL63854.
[cited by applicant]
Davidson, et al.; “Recombinant adeno-associated virus type 2, 4, and 5 vectors: transduction of variant cell types and regions in the mammalian central nervous system.”; Proc Natl Acad Sci USA.; vol. 97, No. 7, pp. 3428…
[cited by applicant]
Day, et al.; “Advances in AAV Vector Development for Gene Therapy in the Retina”; Adv. Exp. Med. Biol.; vol. 801, pp. 687-693 (2014).
[cited by applicant]
Den Dunnen, et al.; “Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion.”; Human Mutation; vol. 15, pp. 7-12 (2000).
[cited by applicant]
Diprimio, et al.; “Surface loop dynamics in adeno-associated virus capsid assembly”; Journal of Virology; vol. 82, No. 11, pp. 5178-5189 (Jun. 2008).
[cited by applicant]
Erles, et al.; “Update on the prevalence of serum antibodies (IgG and IgM) to adeno-associated virus (AAV).”; J Med Virol.; vol. 59, No. 3, pp. 406-411 (Nov. 1999).
[cited by applicant]
Excoffon, et al.; “Directed evolution of adeno-associated virus to an infectious respiratory virus”; Proc Natl Acad Sci USA; vol. 106, No. 10, pp. 3865-3870 (Mar. 10, 2009).
[cited by applicant]
Flotte, et al.; “Gene expression from adeno-associated virus vectors in airway epithelial cells”; Am J Respir Cell Mol Biol.; vol. 7, No. 3, pp. 349-356 (Sep. 1992).
[cited by applicant]
Gen Bank accession No. AAZ79678; rat AAV1 VP3 capsid protein sequence downloaded from NCBI; downloaded on Nov. 3, 2008.
[cited by applicant]
GenBank accession No. ABZ10812; AAV13 capsid protein sequence downloaded from NCBI; downloaded on Nov. 3, 2008.
[cited by applicant]
Girod, et al.; “Genetic capsid modifications allow efficient re-targeting of adeno-associated virus type 2”; Nat. Med.; vol. 5, No. 9, pp. 1052-1056 (Sep. 1999).
[cited by applicant]
Gray, et al.; “Directed Evolution of a Novel Adeno-associated Virus (AAV) Vector That Crosses the Seizure-compromised Blood-Brain Barrier (BBB)”; Molecular Therapy; vol. 18, No. 3, pp. 570-578 (2010).
[cited by applicant]
Gregory-Evans, et al.; “Ex vivo Gene Therapy Using Intravitreal Injection of GDNF-secreting Mouse Embryonic Stem Cells in a Rat Model of Retinal Degeneration”; Molecular Vision; vol. 15, pp. 962-973 (May 13, 2009).
[cited by applicant]
Grieger, et al.; “Separate basic region motifs within the adeno-associated virus capsid proteins are essential for infectivity and assembly”; Journal of Virology; vol. 80, No. 11, pp. 5199-5210 (2006).
[cited by applicant]
Grifman, et al.; “Incorporation of tumor-targeting peptides into recombinant adeno-associated virus capsids”; Molecular Therapy; vol. 3, No. 6, pp. 964-975 (Jun. 2001).
[cited by applicant]
Grimm, et al.; “In Vitro and In Vivo Gene Therapy Vector Evolution via Multispecies Interbreeding and Retargeting of Adeno-Associated Viruses”; Journal of Virology; vol. 82, No. 12, pp. 5887-5911 (Jun. 2008).
[cited by applicant]
Halbert, et al.; “Repeat transduction in the mouse lung by using adeno-associated virus vectors with different serotypes.” J. Virol.; vol. 74, No. 3, pp. 1524-1532 (Feb. 2000).
[cited by applicant]
Hellstrom, et al.; “Cellular tropism and transduction properties of seven adeno-associated viral vector serotypes in adult retina after intravitreal injection”; Gene Therapy; vol. 16, pp. 521-532 (2009).
[cited by applicant]
Hirsch, et al.; “Directed Evolution of the AAV Capsid for Human Embryonic Stem Cell Transduction”; Molecular Therapy; vol. 17, Supp. 1, S177-S178 (May 2009).
[cited by applicant]
Huttner, et al “Genetic Modifications of the Adeno-Associated Virus Type 2 Capsid Reduce Affinity to Human Serum Antibodies and Overcome Potential Limitations of Neutralizing Antibodies for the Used in Human Gene Therap…
[cited by applicant]
Huttner, et al.; “Genetic modifications of the adeno-associated virus type 2 capsid reduce the affinity and the neutralizing effects of human serum antibodies.”; Gene Ther; vol. 10, pp. 2139-2147 (Dec. 2003).
[cited by applicant]
Jang, et al.; “An evolved adeno-associated viral variant enhances gene delivery and gene targeting in neural stem cells”; Mol Ther.; vol. 19, No. 4, pp. 667-675 (Apr. 2011).
[cited by applicant]
Jeune, et al.; “Pre-existing Anti-Adeno-Associated Virus Antibodies as a Challenge in AAV Gene Therapy”; Human Gene Therapy Methods; vol. 24, pp. 59-67 (Apr. 2013).
[cited by applicant]
Karp, et al.; “An in vitro model of differentiated human airway epithelia, Methods for establishing primary cultures”; Methods Mol Biol.; vol. 188, pp. 115-137 (2002).
[cited by applicant]
Kern, et al.; “Identification of a heparin-binding motif on adeno-associated virus type 2 capsids”; Journal of Virology; vol. 77, No. 20, pp. 11072-11081 (Oct. 2003).
[cited by applicant]
Khabou, et al.; “Insight Into the Mechanisms of Enhanced Retinal Transduction by the Engineered AAV2 Capsid Variant—7m8”; Biotechnology and Bioengineering; vol. 113, No. 12, pp. 2712-2724 (Dec. 2016).
[cited by applicant]
Khani, et al.; “AAV-Mediated Expression Targeting of Rod and Cone Photoreceptors with a Human Rhodopsin Kinase Promoter”; Investigative Ophthalmology & Visual Science; vol. 48, No. 9, pp. 3954-3961 (Sep. 2007).
[cited by applicant]
Klimczak, et al.; “A Novel Adeno-Associated Viral Variant for Efficient and Selective Intravitreal Transduction of Rat Muller Cells”; PLoS ONE; vol. 4, No. 10, pp. 1-10 (Oct. 2009).
[cited by applicant]
Klimczak; “Molecular Evolution of Adeno-associated Virus for Improved Retinal Gene Therapies”; Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Molecular and Ce…
[cited by applicant]
Koerber, et al.; “DNA Shuffling of Adeno-associated Virus Yields Functionally Diverse Viral Progeny”; Molecular Therapy; vol. 16, No. 10, pp. 1703-1709 (Oct. 2008).
[cited by applicant]
Koerber, et al.; “Engineering of a Novel AAV Vector In a Human Airway Model System for Cystic Fibrosis Gene Therapy”; AlChE Annual Meeting Abstract, 3 pages (Nov. 29, 2008).
[cited by applicant]
Koerber, et al.; “Molecular Evolution of Adeno-associated Virus for Enhanced Glial Gene Delivery”, Molecular Therapy; vol. 17, No. 12, pp. 2088-2095 (Dec. 2009).
[cited by applicant]
Kotin et al., (2017) “Geneseq Accession No. BDN88104”, computer printout, 2 pages.
[cited by applicant]
Kotterman, et al.; “Engineering adeno-associated viruses for clinical gene therapy”; Nat Rev Genet; vol. 15, No. 7, pp. 445-451 (Jul. 1, 2014).
[cited by applicant]
Kotterman, et al.; “Enhanced selective gene delivery to neural stem cells in vivo by an adeno-associated viral variant”; Development; vol. 142, pp. 1885-1892 (2015).
[cited by applicant]
Kwon, et al.; “Designer gene delivery vectors: molecular engineering and evolution of adeno-associated viral vectors for enhanced gene transfer”; Pharmaceutical Research; vol. 25, No. 3, pp. 489-499 (Mar. 2008).
[cited by applicant]
Lai, et al.; “Long-term evaluation of AAV-mediated sFlt-1 gene therapy for ocular neovascularization in mice and monkeys”; Mol Ther.; vol. 12, No. 4, pp. 659-668 (Oct. 2005).
[cited by applicant]
Lee, at al.; “Adena-associated Virus (AAV) Vectors: Rational Design Strategies for Capsid Engineering”; Current Opinion in Biomedical Engineering; pp. 7:58-7:63 (2018).
[cited by applicant]
Li, et al.; “Engineering and Selection of Shuffled AAV Genomes: A New Strategy for Producing Targeted Biological Nanoparticles”; Molecular Therapy; vol. 16, No. 7, pp. 1252-1260 (Jul. 2008).
[cited by applicant]
Li, et al.; “Generation of Novel AAV Variants by Directed Evolution for Improved CFTR Delivery to Human Ciliated Airway Epithelium”; Molecular Therapy; vol. 17, No. 12, pp. 2067-2077 (Dec. 2009).
[cited by applicant]
Limberis, et al.; “Adeno-associated virus serotype 9 vectors transduce murine alveolar and nasal epithelia and can be readministered”; Proc Natl Acad Sci USA; vol. 103, No. 35, pp. 12993-12998 (Aug. 29, 2006).
[cited by applicant]
Loiler, et al.; “Targeting recombinant adeno-associated virus vectors to enhance gene transfer to pancreatic islets and liver”; Gene Ther.; vol. 10, pp. 1551-1558 (2003).
[cited by applicant]
Maguire, et al.; “Directed evolution of adeno-associated virus for glioma cell transduction”; J. Neurooncol.; vol. 96, pp. 337-347 (2010).
[cited by applicant]
Maheshri, et al.; “Directed evolution of adeno-associated virus yields enhanced gene delivery vectors”; Nature Biotechnology; vol. 24, No. 2, pp. 198-204 (Feb. 2006).
[cited by applicant]
McCullum, et al.; “Random Mutagenesis by Error-Prone PCR”; Methods Mol Biol.; vol. 634, pp. 103-109; doi: 10.1007/978-1-60761-652-8_7 (2010).
[cited by applicant]
McGee, et al., “Glial Cell Line Derived Neurotrophic Factor Delays Photoreceptor in a Transgenic Rat Model of Retinitis Pigmentosa”; Molecular Therapy; vol. 4, No. 6, pp. 622-629 (Dec. 2001).
[cited by applicant]
Michelfelder, et al.; “Successful Expansion but Not Complete Restriction of Tropism of Adeno-Associated Virus by In Vivo Biopanning of Random Virus Display Peptide Libraries”; PLoS One; vol. 4, No. 4, pp. 1-13 (Apr. 200…
[cited by applicant]
Michelfelder, et al.; “Vectors selected from adeno-associated viral display peptide libraries for leukemia cell-targeted cytotoxic gene therapy”; Experimental Hematology; vol. 35, pp. 1766-1776 (2007).
[cited by applicant]
Mitchell, et al.; “AAV's anatomy: Roadmap for optimizing vectors for translational success”; Curr Gene Ther.; vol. 10, No. 5, pp. 319-340 (Oct. 2010).
[cited by applicant]
Miyake, et al.; “Global gene transfer into the CNS across the BBB after neonatal systemic delivery of single-stranded AAV vectors”; Brain Research; vol. 1389, pp. 19-26 (2011).
[cited by applicant]
Moskalenko, et al; “Epitope mapping of human anti-adeno-associated virus type 2 neutralizing antibodies: implications for gene therapy and virus structure.”; J. Virol.; vol. 74, No. 4, pp. 1761-1766 (Feb. 2000).
[cited by applicant]
Muller, et al.; “Random peptide libraries displayed on adeno-associated virus to select for targeted gene therapy vectors”; Nat Biotechnol; vol. 21, No. 9, pp. 1040-1046 (Sep. 2003).
[cited by applicant]
Nguyen, et al; “Convection-enhanced delivery of AAV-2 combined with heparin increases TK gene transfer in the rat brain.”; Neuroreport; vol. 12, No. 9, pp. 1961-1964 (Jul. 3, 2001).
[cited by applicant]
Nicklin, et al.; “Efficient and selective AAV2-mediated gene transfer directed to human vascular endothelial cells”; Mol. Ther.; vol. 4, No. 2, pp. 174-181 (Aug. 2001).
[cited by applicant]
Opie, et al.; “Identification of Amino Acid Residues in the Capsid Proteins of Adeno-Associated Virus Type 2 that Contribute to Heparan Sulfate Proteoglycan Binding”; Journal of Virology; vol. 77, No. 12, pp. 6995-7006 …
[cited by applicant]
Ortolano, et al.; “Present and Future of Adeno Associated Virus Based Gene Therapy Approaches”; Recent Patents on Endocrine, Metabolic & Immune Drug Discovery; vol. 6, pp. 47-66 (2012).
[cited by applicant]
Paddison, et al.; “Stable suppression of gene expression by RNAi in mammalian cells”; Proc. Nat'l Acad. Sci. USA; vol. 99, No. 3, pp. 1443-1448 (Feb. 5, 2002).
[cited by applicant]
Padron, et al.; “Structure of adeno-associated virus type 4”; Journal of Virology; vol. 79, No. 8, pp. 5047-5058 (Apr. 2005).
[cited by applicant]
Park, et al.; “Intravitreal delivery of AAV8 retinoschisin results in cell type-specific gene expression and retinal rescue in the Rs1-KO mouse”; Gene Therapy; vol. 16, pp. 916-926 (2009).
[cited by applicant]
Pechan, et al; “Novel anti-VEGF chimeric molecules delivered by AAV vectors for inhibition of retinal neovascularization.”; Gene. Ther.; vol. 16, No. 1, pp. 10-16 (Jan. 2009).
[cited by applicant]
Perabo, et al.; “Combinatorial engineering of a gene therapy vector: directed evolution of adeno-associated virus”; The Journal of Gene Medicine; vol. 8, No. 2, pp. 155-162 (Feb. 2006).
[cited by applicant]
Perabo, et al.; “Heparan Sulfate Proteoglycan Binding Properties of Adeno-Associated Virus Retargeting Mutants and Consequences for Their In Vivo Tropism”; Journal of Virology; vol. 80, No. 14, pp. 7265-7269 (Jul. 2006).
[cited by applicant]
Perabo, et al.; “In Vitro Selection of Viral Vectors with Modified Tropism: The Adeno-associated Virus Display”; Molecular Therapy; vol. 8, No. 1, pp. 151-157 (Jul. 2003).
[cited by applicant]
Petrs-Silva, et al.; “High-efficiency transduction of the mouse retina by tyrosine-mutant AAV serotype vectors”; Molecular Therapy; vol. 17, No. 3, pp. 463-471 (Mar. 2009).
[cited by applicant]
Popa-Wagner, et al.; “Impact of VP1-Specific Protein Sequence Motifs on Adeno-Associated Virus Type 2 Intracellular Trafficking and Nuclear Entry”; Journal of Virology; vol. 86, No. 17, pp. 9163-9174 (Sep. 2012).
[cited by applicant]
Rabinowitz, et al.; “Building a Better Vector: The Manipulation of AAV Virions”; Virology; vol. 278, pp. 301-308 (2000).
[cited by applicant]
Rabinowitz, et al.; “Insertional mutagenesis of AAV2 capsid and the production of recombinant virus.”; Virology; vol. 265, No. 2, pp. 274-285 (Dec. 20, 1999).
[cited by applicant]
Rayaprolu, et al.; “Comparative Analysis of Adeno-Associated Virus Capsid Stability and Dynamics”; Journal of Virology; vol. 87, No. 24, pp. 13150-13160 (Dec. 2013).
[cited by applicant]
Ried, et al.; “Adeno-associated virus capsids displaying immunoglobulin-binding domains permit antibody-mediated vector retargeting to specific cell surface receptors”; J. Virol.; vol. 76, No. 9, pp. 4559-4566 (May 2002…
[cited by applicant]
Ryals, et al.; “Quantifying transduction efficiencies of unmodified and tyrosine capsid mutant AAV vectors in vitro using two ocular cell lines”; Mol Vision; vol. 17, pp. 1090-1102 (Apr. 2011).
[cited by applicant]
Santiago-Ortiz, et al.; “AAV Ancestral Reconstruction Library Enables Selection of Broadly Infectious Viral Variants”; Gene. Ther.; vol. 22, No. 12, pp. 934-946 (Dec. 2015).
[cited by applicant]
Schaffer et al., 2014, Geneseq Accession No. BBR00471, computer printout, pp. 1-2.
[cited by applicant]
Schaffer, et al.; “Directed evolution of AAV vector mutants for enhanced gene delivery”; Abstracts of Papers American Chemical Society; vol. 227, Part 1, p. U214 (Mar. 2004).
[cited by applicant]
Shao, et al.; “Gene Transfer to the Gastrointestinal Tract After Peroral Administration of Recombinant Adeno-associated Virus Type 2 Vectors”; Journal of Pediatric Gastroenterology and Nutrition; vol. 43, pp. 168-179 (A…
[cited by applicant]
Shen, et al.; “Characterization of the relationship of AAV capsid domain swapping to liver transduction efficiency”; Mol Ther.; vol. 15, No. 11, pp. 1955-1962 (Aug. 28, 2007).
[cited by applicant]
Shen, et al.; “Multiple Roles for Sialylated Glycansin Determining the Cardiopulmonary Tropism of Adeno-Associated Virus 4”; Journal of Virology; vol. 87, No. 24, pp. 13206-13213 (Dec. 2013).
[cited by applicant]
Shi, et al.; “Capsid modifications overcome low heterogeneous expression of heparan sulfate proteoglycan that limits AAV2-mediated gene transfer and therapeutic efficacy in human ovarian carcinoma”; Gynecol. Oncol.; vol…
[cited by applicant]
Shi, et al.; “Insertional mutagenesis at positions 520 and 584 of adeno-associated virus type 2 (AAV2) capsid gene and generation of AAV2 vectors with eliminated heparin-binding ability and introduced novel tropism”; Hu…
[cited by applicant]
Shi, et al.; “RGD inclusion in VP3 provides adeno-associated virus type 2 (AAV2)-based vectors with a heparan sulfate-independent cell entry mechanism”; Mol. Ther.; vol. 7, No. 4, pp. 515-525 (Apr. 2003).
[cited by applicant]
Shi, W. et al.; “Insertional Mutagenesis of the Adeno-Associated Virus Type 2 (AAV2) Capsid Gene and Generation of AAV2 Vectors Targeted to Alternative Cell-Surface Receptors”; Human Gene Therapy; vol. 12, pp. 1697-1711…
[cited by applicant]
Sonntag, et al.; “Adeno-associated virus type 2 capsids with externalized VP1/VP2 trafficking domains are generated prior to passage through the cytoplasm and are maintained until uncoating occurs in the nucleus”; Journ…
[cited by applicant]
Steinbach, et al.; “Assembly of adeno-associated virus type 2 capsids in vitro” J of Gen Virology; vol. 78, pp. 1453-1462 (1997).
[cited by applicant]
Sullivan, et al.; “Rationally designed AAV2 and AAVrh8R capsids provide improved transduction in the retina and brain”; Gene Therapy; vol. 25, pp. 205-219 (2018).
[cited by applicant]
Sun, et al.; “Immune responses to adeno-associated virus and its recombinant vectors”; Gene Therapy; vol. 10, pp. 964-976 (2003).
[cited by applicant]
Surace, et al.; “Delivery of Adeno-Associated Virus Vectors to the Fetal Retina: Impact of Viral Capsid Proteins on Retinal Neuronal Progenitor Transduction”; Journal of Virology; vol. 77, No. 14, pp. 7957-7962 (Jul. 20…
[cited by applicant]
Takada, et al.; “Synaptic Pathology in Retinoschisis Knockout (Rs1
[cited by applicant]
Tal; “Adeno-Associated Virus-Based Vectors in Gene Therapy”; Journal of Biomedical Science; vol. 7, No. 4, pp. 279-291 (Jul. 2000).
[cited by applicant]
Tervo, et al.; “A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons”; Neuron; vol. 92, pp. 372-382 (2016).
[cited by applicant]
Tomar, et al.; “Use of Adeno-Associated Viral Vector for Delivery of Small Interfering RNA”; Oncogene; vol. 22, No. 36, pp. 5712-5715 (Aug. 28, 2003).
[cited by applicant]
UniProtKB database: B4Y881_9VIRU; “Capsid protein VP1, adeno-associated virus”; 6 pages (Sep. 23, 2008).
[cited by applicant]
Van Vliet, et al.; “Proteolytic mapping of the adeno-associated virus capsid”; Mol Ther.; vol. 14, No. 6, pp. 809-821 (Dec. 2006).
[cited by applicant]
Venkatakrishnan, et al.; “Structure and Dynamics of Adeno-Associated Virus Serotype 1 VP1-Unique N-Terminal Domain and Its Role in Capsid Trafficking”; Journal of Virology; vol. 87, No. 9, pp. 4974-4984 (May 2013).
[cited by applicant]
Watanabe, et al.; “Tropisms of AAV for Subretinal Delivery to the Neonatal Mouse Retina and Its Application for In Vivo Rescue of Developmental Photoreceptor Disorders”; PLoS ONE; vol. 8, No. 1, 12 pages (Jan. 15, 2013).
[cited by applicant]
Waterkamp, et al.; “Isolation of targeted AAV2 vectors from novel virus display libraries”; J. Gene. Med.; vol. 8, pp. 1307-1319 (Sep. 6, 2006).
[cited by applicant]
White, et al.; “Genetic Modification of Adeno-Associated Viral Vector Type 2 Capsid Enhances Gene Transfer Efficiency in Polarized Human Airway Epithelial Cells”; Human Gene Therapy; vol. 19, pp. 1407-1414 (Dec. 2008).
[cited by applicant]
White, et al.; “Targeted gene delivery to vascular tissue in vivo by tropism-modified adeno-associated virus vectors”; Circulation; vol. 109, pp. 513-519 (Feb. 3, 2004).
[cited by applicant]
Wickham, et al.; “Increased in vitro and in vivo gene transfer by adenovirus vectors containing chimeric fiber proteins”; Journal of Virology; vol. 71, No. 11, pp. 8221-8229 (Nov. 1997).
[cited by applicant]
Willett, et al.; “Immunology of AAV-mediated gene transfer in the eye”; Frontiers in Immunology; vol. 4, No. 261, 8 pages (Aug. 2013).
[cited by applicant]
Wobus, et al.; “Monoclonal antibodies against the adeno-associated virus type 2 (AAV-2) capsid: epitope mapping and identification of capsid domains involved in AAV-2-cell interaction and neutralization of AAV-2 infecti…
[cited by applicant]
Work, et al.; “Vascular bed-targeted in vivo gene delivery using tropism-modified adeno-associated viruses”; Mol. Ther.; vol. 13, No. 4, pp. 683-693 (Apr. 2006).
[cited by applicant]
Wu, et al.; “Mutational analysis of the adeno-associated virus type 2 (AAV2) capsid gene and construction of AAV2 vectors with altered tropism”; Journal of Virology; vol. 74, No. 18, pp. 8635-8647 (Sep. 2000).
[cited by applicant]
Wu, et al.; “α2,3 and α2,6 N-linked Sialic Acids Facilitate Efficient Binding and Transduction by Adeno-Associated Virus Types 1 and 6”; Journal of Virology; vol. 80, No. 18, pp. 9093-9103 (Sep. 2006).
[cited by applicant]
Xiao, et al.; “Adenovirus-facilitated nuclear translocation of adeno-associated virus type 2”; Journal of Virology; vol. 76, No. 22, pp. 11505-11517 (Nov. 2002).
[cited by applicant]
Xie, et al.; “The atomic structure of adeno-associated virus (AAV-2), a vector for human gene therapy”; PNAS; vol. 99, No. 16, pp. 10405-10410 (Aug. 6, 2002).
[cited by applicant]
Yang, et al.; “A myocardium tropic adeno-associated virus (AAV) evolved by DNA shuffling and in vivo selection”; PNAS; vol. 106, No. 10, pp. 3946-3951 (Mar. 10, 2009).
[cited by applicant]
Yang, et al.; “Directed Evolution of Adeno-Associated Virus (AAV) as Vector for Muscle Gene Therapy”; Methods in Molecular Biology; vol. 709, pp. 127-139 (2011).
[cited by applicant]
Yu; “Current Approaches and Future Directions of Gene Therapy in Alzheimer's Disease”; Neurochemical Journal; vol. 5, No. 3, pp. 159-168 (2011).
[cited by applicant]
Zabner, et al.; “Adeno-associated virus type 5 (AAV5) but not AAV2 binds to the apical surfaces of airway epithelia and facilitates gene transfer”; J Virol.; No. 74, No. 8, pp. 3852-3858 (Apr. 2000).
[cited by applicant]
Zhao, et al.; “Molecular evolution by staggered extension process (StEP) in vitro recombination”; Nat Biotechnol; vol. 16, No. 3, pp. 258-261 (Mar. 1998).
[cited by applicant]
Zincarelli, et al.; “Analysis of AAV Serotypes 1-9 Mediated Gene Expression and Tropism in Mice After Systemic Injection”; Molecular Therapy; vol. 16, No. 6, pp. 1073-1080 (Jun. 2008).
[cited by applicant]
Zolotukhin, et al.; “Recombinant adeno-associated virus purification using novel methods improves infectious titer and yield”; Gene Therapy; vol. 6, pp. 973-985 (1999).
[cited by applicant]
Weinstein, et al., “New Methods in Engineering Adeno-Associated Virus (AAV) for Improved Gene Delivery.” Dissertaion from University of California, Berkeley, Dissertation No. 3720891, ProQuest ID: 1726005971, https://di…
[cited by applicant]
Bantel-Schaal et al., (1999) “Human adeno-associated virus type 5 is only distantly related to other known primate helper-dependent parvoviruses.”, J. Virol., 73:939-947.
[cited by applicant]
Third-Party Submission dated Mar. 15, 2022, U.S. Appl. No. 16/315,032, 95 pages.
[cited by applicant]
Antonarakis, “Recommendations for a nomenclature system for human gene mutations”, Human Mutation, 1998, 11(1):1-3.
[cited by applicant]
Arbetman et al., “Caprine adeno-associated virus capsid protein VPI”, Score result 33 for WO2004112727A2, Accession No. ADV70291, Dec. 29, 2004, 3 pages.
[cited by applicant]
Bantel-Schaal et al., “Score result: Human adeno-associated virus type 5 is only distantly related to other known primate helper-dependent parvoviruses, Gene Accession No. Y18065”, 1999, 4 pages.
[cited by applicant]
Bantel-Schaal et al., “Score result: Human adeno-associated virus type 5 is only distantly related to other known primate helper-dependent parvoviruses, Gene Accession No. Q9YIJ1, integrated into UniProtKB/TrEMBL on May…
[cited by applicant]
Dimattia et al., “Structural insight into the unique properties of adeno-associated virus serotype 9”, Journal of Virology, Jun. 2012, 86(12):6947-6958.
[cited by applicant]
Douar, et al., “Deleterious effect of peptide insertions in a permissive site of the AAV2 capsiD”, Virology, May 10, 2003, 309(2):203-208.
[cited by applicant]
Gurda et al., “Mapping a neutralizing epitope onto the capsid of adeno-associated virus serotype 8”, Journal of Virology, Aug. 2012, 86(15): 7739-7751.
[cited by applicant]
Klimczak et al., “Molecular engineering of adeno-associated virus yields a novel variant with efficient intravitreal transduction of Muller cells”, Molecular Therapy, May 2009, 17:Supplement 1:S178.
[cited by applicant]
Koerber et al., “Molecular evolution of adeno-associated virus for enhanced glial gene delivery”, Molecular Therapy, Dec. 2009, 17(12):2088-2095.
[cited by applicant]
Koerber, “Engineering Adeno-associated Viral Vectors with Novel Structure-Function Relationships for Improved Gene Delivery”, Koerber Dissertation, University of California, Berkeley, 2008, 323 pages.
[cited by applicant]
Lane et al., “Production, purification, crystallization and preliminary X-ray analysis of adeno-associated virus serotype 8”, Acta Crystallographica Section F Structural Biology and Crystallization Communications, Jun. …
[cited by applicant]
Lerch et al., “The structure of adeno-associated virus serotype 3B (AAV-3B): Insights into receptor binding and immune evasion”, Virology, Jul. 20, 2010, 403(1):26-36.
[cited by applicant]
Lochrie et al., “Mutations on the external surfaces of adeno-associated virus type 2 capsids that affect transduction and neutralization”, Journal of Virology, Jan. 2006, 80(2):821-834.
[cited by applicant]
Mace et al., “Targeting channelrhodopsin-2 to ON-bipolar cells with vitreally administered AAV restores on and off visual responses in blind mice”, Molecular Therapy, Jan. 2015, 23(1):7-16.
[cited by applicant]
McCraw, “Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20”, Virology, Sep. 2012, 431(1-2):40-49.
[cited by applicant]
Miller et al., “Production, purification and preliminary X-ray crystallographic studies of adeno-associated virus serotype 1”, Acta Crystallographica Section F Structural Biology and Crystallization Communications, Dec.…
[cited by applicant]
Nam et al., “Structure of adeno-associated virus serotype 8, a gene therapy vector”, Journal of Virology, Nov. 2007, 81(22):12260-12271.
[cited by applicant]
Petrs-Silva et al., “Novel properties of tyrosine-mutant AAV2 vectors in the mouse retina”, Molecular Therapy, Feb. 2011, 19(2):293-301.
[cited by applicant]
Samulski et al., “Rescue of adeno-associated virus from recombinant plasmids: gene correction within the terminal repeats of AAV”, Cell, May 1983, 33(1):135-143.
[cited by applicant]
Tse et al., “Structure-guided evolution of antigenically distinct adeno-associated virus variants for immune evasion”, Proceedings of the National Academy of Sciences of the United States of America, Jun. 13, 2017, 114(…
[cited by applicant]
Walters et al., “Structure of Adeno-Associated Virus Serotype 5”, Journal of Virology, Apr. 2004, 78(7):3361-3371.
[cited by applicant]
Wu et al., “Single amino acid changes can influence titer, heparin binding, and tissue tropism in different adeno-associated virus serotypes”, Journal of Virology, Nov. 2006, 80(22):11393-11397.
[cited by applicant]
Xie et al., “Structure-function analysis of receptor-binding in adeno-associated virus serotype 6 (AAV-6)”, Virology, Nov. 10, 2011, 420(1):10-19.
[cited by applicant]
Xue et al., “CRALBP supports the mammalian retinal visual cycle and cone vision”, The Journal of Clinical Investigation, Feb. 2015, 125(2):727-738.
[cited by applicant]