IP Library › Granted Patent US 12,312,586
Granted Patent B2
US 12,312,586 · App. 18/797,394 · Granted May 27, 2025

Treatment of MST1 related diseases and disorders

Inventors: Omri Gottesman (San Diego, CA); Shannon Bruse (San Diego, CA); Paul Buske (Madison, WI); Brian Cajes (San Diego, CA); David Jakubosky (San Diego, CA); Sarah Kleinstein (San Diego, CA); David Lewis (Madison, WI); David Rozema (Cross Plains, WI); John Vekich (San Diego, CA)
Assignee: Empirico Inc.
C12N15/1136A61P11/00C12N2310/11C12N2310/14C12N2310/315C12N2310/321C12N2310/322C12N2310/351
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Quick Facts
Patent No.
US 12,312,586
App. No.
18/797,394
Granted
May 27, 2025
Kind
B2
Abstract

Disclosed herein are compositions comprising an oligonucleotide that targets MST1. The oligonucleotide may include a small interfering RNA (siRNA) or an antisense oligonucleotide (ASO). Also provided herein are methods of treating conditions associated with MST1 variants that include providing an oligonucleotide that targets MST1 to a subject.

Claims (35)

1. A composition

for modulating an expression of MST1 (macrophage-stimulating 1), the composition comprising an oligonucleotide comprising an siRNA comprising a sense strand and an antisense strand,

wherein

each strand is independently 12-30 nucleosides in length;

the sense strand comprises an oligonucleotide sequence of SEQ ID NO: 2999 or 6385; and the antisense strand comprises an oligonucleotide sequence of SEQ ID NO: 6023 or 6415; and

(a) the sense strand comprises modification pattern 30S 5′-snnnnnnNfnNfNfnnnnnnnnnsnsn-3′;

(b) the antisense strand comprises modification pattern 15AS 5′-nsNfsnnnnNfnnNfnNfnNfnNfnNfnsnsn-3′; or

(c) both (a) and (b),

wherein

n is 2′-O-methyl (2′-OMe) A, G, C, and U, respectively;

Nf is 2′-fluoro (2′-F) A, G, C, and U, respectively; and

s is a phosphorothioate linkage.

2. A composition

for modulating an expression of MST1 (macrophage-stimulating 1), the composition comprising a modified oligonucleotide comprising an siRNA comprising a sense strand and an antisense strand, each strand is independently 12-30 nucleosides in length, at least one of the sense strand and the antisense strand comprises a nucleoside sequence comprising 12-30 contiguous nucleosides of SEQ ID NO: 6185; and

(a) the sense strand comprises modification pattern 30S (5′-snnnnnnNfnNfNfnnnnnnnnnsnsn-3′);

(b) the antisense strand comprises modification pattern 15AS (5′-nsNfsnnnnNfnnNfnNfnNfnNfnNfnsnsn-3′); or

(c) both (a) and (b),

wherein

n is 2′-O-methyl (2′-OMe) A, G, C, and U, respectively;

Nf is 2′-fluoro (2′-F) A, G, C, and U, respectively; and

s is a phosphorothioate linkage.

3. The composition of claim 2 , wherein the modified oligonucleotide is conjugated to a ligand.

4. The composition of claim 3 , wherein the ligand comprises a sugar moiety.

5. The composition of claim 4 , wherein the sugar moiety comprises N-acetylgalactosamine (GalNAc), N-acetylglucosamine (GlcNAc), or mannose.

6. The composition of claim 3 , wherein the ligand is conjugated to the 5′ or 3′ terminus of the sense strand or antisense strand.

7. The composition of claim 3 , wherein the ligand is conjugated to the 5′ terminus of the sense strand.

8. A double stranded ribonucleic acid (dsRNA) for inhibiting expression of MST1 (macrophage-stimulating 1) in a cell, or a pharmaceutically acceptable salt thereof, comprising:

a sense strand and an antisense strand forming a double stranded region, wherein the sense strand comprises the nucleotide sequence:

5′-[ETL17]sacuucuUfgUfCfagacauaaasusu-3′ (SEQ ID NO: 6538), and wherein the antisense strand comprises the nucleotide sequence:

5′-usUfsuaugUfcuGfaCfaAfgAfaGfususu-3′ (SEQ ID NO: 6570), wherein

a, g, c, and u are 2′-O-methyl (2′-OMe) A, G, C, and U, respectively;

Af, Gf, Cf, and Uf are 2′-fluoro (2′-F) A, G, C, and U, respectively;

s is a phosphorothioate linkage, and

[ETL17] is

 wherein J is the attachment point to the 5′ phosphorothioate linkage of the sense strand.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 26, 2025
From: GOTTESMAN, OMRI; BRUSE, SHANNON; BUSKE, PAUL; CAJES, BRIAN; JAKUBOSKY, DAVID; KLEINSTEIN, SARAH; LEWIS, DAVID; ROZEMA, DAVID; VEKICH, JOHN
To: EMPIRICO INC.
Reel/Frame 070640/0949 →
Continuity (5)
Continuation PCTUS2023083875 · Dec 13, 2023
Provisional Application 63584461 · Sep 21, 2023
Provisional Application 63582783 · Sep 14, 2023
Provisional Application 63432918 · Dec 15, 2022
Related Publication 20240392296A1 · Nov 28, 2024
References Cited (37)
US 11879125B2 · Wakefield · 2024 [cited by examiner]
US 20090312194A1 · Tyner et al. · 2009 [cited by applicant]
US 20100061977A1 · Ruben et al. · 2010 [cited by applicant]
US 20130303932A1 · Helfenbein et al. · 2013 [cited by applicant]
US 20160367534A1 · Welm et al. · 2016 [cited by applicant]
US 20180305689A1 · Sætrom et al. · 2018 [cited by applicant]
US 20190358295A1 · Socolovsky et al. · 2019 [cited by applicant]
US 20240175031A1 · Gottesman et al. · 2024 [cited by applicant]
US 20240392295A1 · Gottesman et al. · 2024 [cited by applicant]
US 20240392299A1 · Gottesman et al. · 2024 [cited by applicant]
EP 3176268A1 · 2017 [cited by applicant]
KR 20160014204A · 2016 [cited by applicant]
WO WO2004045543A2 · 2004 [cited by applicant]
WO WO2009062199A1 · 2009 [cited by applicant]
WO WO2021030358A1 · 2021 [cited by applicant]
WO WO2022266037A1 · 2022 [cited by applicant]
WO WO2022266042A1 · 2022 [cited by applicant]
WO WO2024129886A2 · 2024 [cited by applicant]
Chemical Abstracts Service. CAS Registry: 114616-27-2. MMT-Hexylaminolinker Phosphoramidite: pp. 1-9. STN Entry Date Sep. 25, 2006. Retrieved Oct. 11, 2024. Retrieved from: https://pubchem.ncbi.nlm.nih.gov/compound/9873… [cited by applicant]
Chemical Abstracts Service. CAS Registry: 178925-21-8. Amino-Modifier C6 dT: pp. 1-4. STN Entry Date Feb. 18, 2024. Retrieved Oct. 11, 2024. Retrieved from :https://pubchem.ncbi.nlm.nih.gov/substance/488407216. [cited by applicant]
UniProtKB Accession No. P26927. Hepatocyte Growth Factor-Like Protein. Record created Aug. 1, 1992. Retrieved Oct. 28, 2024 at URL: https://www.uniprot.org/uniprotkb/P26927/entry pp. 1-12. [cited by applicant]
Ye, H. et al. GenBank Accession No. NM_020998. Version No. NM_020998.4. [cited by applicant]
Co-pending U.S. Appl. No. 18/625,829, inventors Gottesman; Omri et al., filed Apr. 3, 2024. [cited by applicant]
Co-pending U.S. Appl. No. 18/795,002, inventors Gottesman; Omri et al., filed Aug. 5, 2024. [cited by applicant]
PCT/US2022/033344 International Search Report and Written Opinion dated Nov. 7, 2022. [cited by applicant]
PCT/US2022/033344 Invitation to Pay Additional Fees dated Sep. 2, 2022. [cited by applicant]
PCT/US2022/033350 International Preliminary Report on Patentability dated Dec. 14, 2023. [cited by applicant]
PCT/US2022/033350 Invitation to Pay Additional Fees dated Sep. 2, 2022. [cited by applicant]
PCT/US2023/083875 International Search Report and Written Opinion dated Jun. 20, 2024. [cited by applicant]
PCT/US2023/083875 Invitation to Pay Additional Fees dated Mar. 8, 2024. [cited by applicant]
Wang et al.: Roles of macrophage stimulating protein and tyrosine kinase receptor RON in smoke-induced airway inflammation of rats. Int J Clin Exp Pathol. 8(8):8797-8808 (2015). [cited by applicant]
Zalcenstein et al.: Repression of the MSP/MST-1 gene contributes to the antiapoptotic gain of function of mutant 53. Oncogene. 25:359-369 (2006). [cited by applicant]
Broos et al.: Particle-mediated Intravenous Delivery of Antigen mRNA Results in Strong Antigen-specific T-cell Responses Despite the Induction of Type I Interferon. Molecular Therapy-Nucleic Acids. 5:e326 (2016). [cited by applicant]
Dua et al.: The potenial of siRNA based drug delivery in respiratory disorders: Recent advances and progress. Drug Development Research. 89(6):714-730 (2019). [cited by applicant]
EP22825628.5 European Search Report dated Mar. 11, 2025. [cited by applicant]
Kampmann et al.: Next-generation libraries for robust RNA interference-based genome-wide screens. Proceedings of the National Academy of Sciences (PNAS). 112(26):E3384-E3391 (2015). [cited by applicant]
Sanjana et al.: Improved vectors and genome-wide libraries for CRISPR screening. Nature Methods. 11(8):783-784 (2014). [cited by applicant]