IP Library Granted Patent US 12,419,969
Granted Patent B2
US 12,419,969 · App. 19/097,114 · Granted Sep 23, 2025

AAV capsid variants and uses thereof

Inventors: Mathieu Emmanuel Nonnenmacher (Boston, MA); Tyler Christopher Moyer (Boston, MA); Jiangyu Li (Watertown, MA); Dan Richard Laks (Cambridge, MA)
Assignee: VOYAGER THERAPEUTICS, INC.
A61K48/0041A61K9/0019A61K47/64A61K48/0058A61K48/0075C07K7/06C07K14/005C12N15/86C12N2750/14122C12N2750/14141C12N2830/50
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Quick Facts
Patent No.
US 12,419,969
App. No.
19/097,114
Granted
Sep 23, 2025
Kind
B2
Abstract

The disclosure relates to compositions and methods for the preparation, use, and/or formulation of adeno-associated virus capsid protein variants.

Claims (45)

1. An adeno-associated virus (AAV) capsid variant comprising an amino acid sequence at least 95% identical to amino acids 203-742 of SEQ ID NO: 981, wherein the amino acid sequence comprises SPHSKA (SEQ ID NO: 941) in variable region IV (VR-IV).

2. The AAV capsid variant of claim 1 , wherein the amino acid sequence of SPHSKA (SEQ ID NO: 941) is present immediately subsequent to amino acid 455, numbered according to SEQ ID NO: 981.

3. The AAV capsid variant of claim 1 , which comprises an amino acid sequence at least 98% identical to amino acids 203-742 of SEQ ID NO: 981.

4. The AAV capsid variant of claim 1 , which comprises the amino acid sequence of amino acids 203-742 of SEQ ID NO: 981.

5. An AAV particle comprising the AAV capsid variant of claim 4 .

6. A pharmaceutical composition comprising an AAV particle comprising the AAV capsid variant of claim 4 , and a pharmaceutically acceptable excipient.

7. The AAV capsid variant of claim 1 , which comprises an amino acid sequence at least 95% identical to amino acids 138-742 of SEQ ID NO: 981.

8. The AAV capsid variant of claim 1 , which comprises an amino acid sequence at least 98% identical to amino acids 138-742 of SEQ ID NO: 981.

9. The AAV capsid variant of claim 1 , which comprises the amino acid sequence of amino acids 138-742 of SEQ ID NO: 981.

10. The AAV capsid variant of claim 1 , which comprises an amino acid sequence at least 95% identical to the amino acid sequence of SEQ ID NO: 981.

11. The AAV capsid variant of claim 1 , which comprises an amino acid sequence at least 98% identical to the amino acid sequence of SEQ ID NO: 981.

12. A cell comprising the AAV capsid variant of claim 1 .

13. The cell of claim 12 , which is:

(i) a mammalian cell or an insect cell;

(ii) a cell of a brain region or a spinal cord region; or

(iii) a neuron or an astrocyte.

14. A pharmaceutical composition comprising an AAV particle comprising the AAV capsid variant of claim 1 , and a pharmaceutically acceptable excipient.

15. A method of making an AAV particle, comprising:

(i) providing a host cell comprising a viral genome and a polynucleotide encoding the AAV capsid variant of claim 1 ; and

(ii) incubating the host cell under conditions suitable to enclose the viral genome in the AAV capsid variant;

thereby making the AAV particle.

16. A method of delivering a payload to a cell or tissue, comprising administering an effective amount of an AAV particle comprising the AAV capsid variant of claim 1 , thereby delivering the payload to the cell or tissue.

17. The method of claim 16 , wherein the cell or tissue is present in a subject and the AAV particle is administered intravenously, via intra-cisterna magna injection (ICM), intracerebrally, intrathecally, intracerebroventricularly, via intraparenchymal administration, or intramuscularly to the subject.

18. The method of claim 16 , wherein:

(i) the cell is a neuron, a motor neuron, an astrocyte, a glial cell, or an oligodendrocyte; or

(ii) the tissue is a brain tissue or a spinal cord tissue, wherein the brain tissue or the spinal cord tissue is a putamen, substantia nigra, frontal cortex, motor cortex, temporal cortex, caudate, dentate nucleus, brain stem, cerebral cortex, brain stem, hippocampus, thalamus, cervical spinal cord, thoracic spinal cord, or lumbar spinal cord.

19. An adeno-associated virus (AAV) capsid variant comprising the amino acid sequence of SEQ ID NO: 981.

20. An AAV particle comprising the AAV capsid variant of claim 19 .

21. A pharmaceutical composition comprising an AAV particle comprising the AAV capsid variant of claim 19 , and a pharmaceutically acceptable excipient.

22. A polynucleotide encoding an adeno-associated virus (AAV) capsid variant comprising an amino acid sequence at least 95% identical to amino acids 203-742 of SEQ ID NO: 981, wherein the amino acid sequence comprises SPHSKA (SEQ ID NO: 941) in variable region IV (VR-IV).

23. The polynucleotide of claim 22 , which comprises a nucleotide sequence at least 95% identical to the nucleotide sequence of SEQ ID NO: 983.

24. The polynucleotide of claim 22 , which comprises the nucleotide sequence of SEQ ID NO: 983.

25. An adeno-associated virus (AAV) particle comprising an AAV capsid variant comprising an amino acid sequence at least 95% identical to amino acids 203-742 of SEQ ID NO: 981, wherein the amino acid sequence comprises SPHSKA (SEQ ID NO: 941) in variable region IV (VR-IV).

26. The AAV particle of claim 25 , wherein the AAV capsid variant comprises the amino acid sequence of amino acids 203-742 of SEQ ID NO: 981.

27. The AAV particle of claim 25 , wherein the AAV capsid variant comprises an amino acid sequence at least 95% identical to the amino acid sequence of SEQ ID NO: 981.

28. The AAV particle of claim 25 , wherein the AAV capsid variant comprises the amino acid sequence of SEQ ID NO: 981.

29. The AAV particle of claim 25 , which comprises a nucleotide sequence encoding a protein, an antibody, an enzyme, or an inhibitory RNA.

30. The AAV particle of claim 29 , further comprising:

(i) a promoter operably linked to the nucleotide sequence;

(ii) a 5′ inverted terminal repeat (ITR) and a 3′ ITR;

(iii) an enhancer;

(iv) an intron;

(v) an exon;

(vi) a nucleotide sequence encoding at least one microRNA (miR) binding site; and/or

(vii) a polyadenylation (polyA) sequence.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 2, 2025
From: NONNENMACHER, MATHIEU EMMANUEL; MOYER, TYLER CHRISTOPHER; LI, JIANGYU; LAKS, DAN RICHARD
To: VOYAGER THERAPEUTICS, INC.
Reel/Frame 070712/0921 →
Continuity (5)
Division 18757141 · Jun 27, 2024
Continuation 18703166
Provisional Application 63339711 · May 9, 2022
Provisional Application 63274806 · Nov 2, 2021
Related Publication 20250228967A1 · Jul 17, 2025
References Cited (291)
US 9409953B2 · Asokan et al. · 2016 [cited by applicant]
US 9585971B2 · Deverman et al. · 2017 [cited by applicant]
US 9644205B2 · Brunicardi et al. · 2017 [cited by applicant]
US 9938541B2 · Nishie et al. · 2018 [cited by applicant]
US 10081659B2 · Chiorini et al. · 2018 [cited by applicant]
US 10265417B2 · Wilson et al. · 2019 [cited by applicant]
US 10485993B2 · Goer et al. · 2019 [cited by applicant]
US 10695441B2 · Wilson et al. · 2020 [cited by applicant]
US 10973928B2 · Wilson et al. · 2021 [cited by applicant]
US 11149256B2 · Gradinaru et al. · 2021 [cited by applicant]
US 11459558B2 · Nakai et al. · 2022 [cited by applicant]
US 11572637B2 · Nakai et al. · 2023 [cited by applicant]
US 11821009B2 · Crystal et al. · 2023 [cited by applicant]
US 11859200B2 · Nonnenmacher et al. · 2024 [cited by applicant]
US 11981967B2 · McGovern et al. · 2024 [cited by applicant]
US 12296025B2 · Nonnenmacher et al. · 2025 [cited by applicant]
US 20040132042A1 · Frankard et al. · 2004 [cited by applicant]
US 20050148076A1 · Allen · 2005 [cited by applicant]
US 20100186103A1 · Gao et al. · 2010 [cited by applicant]
US 20130035472A1 · Horlick et al. · 2013 [cited by applicant]
US 20130296409A1 · Miller et al. · 2013 [cited by applicant]
US 20160333375A1 · Chen · 2016 [cited by applicant]
US 20170166926A1 · Deverman et al. · 2017 [cited by applicant]
US 20170204144A1 · Deverman et al. · 2017 [cited by applicant]
US 20180230186A1 · Deverman et al. · 2018 [cited by applicant]
US 20180265571A1 · Esteves et al. · 2018 [cited by applicant]
US 20200165576A1 · Gradinaru et al. · 2020 [cited by applicant]
US 20200237799A1 · Sah et al. · 2020 [cited by applicant]
US 20200239912A1 · Sah et al. · 2020 [cited by applicant]
US 20200316221A1 · Gao et al. · 2020 [cited by applicant]
US 20210163985A1 · Sah et al. · 2021 [cited by applicant]
US 20210207167A1 · Hou et al. · 2021 [cited by applicant]
US 20210214749A1 · Hou et al. · 2021 [cited by applicant]
US 20210230632A1 · Sah et al. · 2021 [cited by applicant]
US 20210269825A1 · Chamberlain · 2021 [cited by applicant]
US 20210277418A1 · Sah et al. · 2021 [cited by applicant]
US 20210371470A1 · Murlidharan et al. · 2021 [cited by applicant]
US 20210380969A1 · Nonnenmacher et al. · 2021 [cited by applicant]
US 20210393713A1 · Hordeaux et al. · 2021 [cited by applicant]
US 20220042044A1 · Nonnenmacher et al. · 2022 [cited by applicant]
US 20220064675A1 · McCoy et al. · 2022 [cited by applicant]
US 20220186256A1 · Danos et al. · 2022 [cited by applicant]
US 20230119163A1 · Nakai et al. · 2023 [cited by applicant]
US 20230131352A1 · Nonnenmacher et al. · 2023 [cited by applicant]
US 20230203102A1 · Nonnenmacher et al. · 2023 [cited by applicant]
US 20240141377A1 · Nguyen et al. · 2024 [cited by applicant]
US 20240200097A1 · Nonnenmacher et al. · 2024 [cited by applicant]
US 20240374756A1 · Nonnenmacher et al. · 2024 [cited by applicant]
US 20240391988A1 · Liu et al. · 2024 [cited by applicant]
US 20250001012A1 · Nonnenmacher et al. · 2025 [cited by applicant]
US 20250011372A1 · Nonnenmacher et al. · 2025 [cited by applicant]
US 20250034559A1 · Nonnenmacher et al. · 2025 [cited by applicant]
US 20250049955A1 · Nonnenmacher et al. · 2025 [cited by applicant]
US 20250161485A1 · Nonnenmacher et al. · 2025 [cited by applicant]
CN 106032540A · 2016 [cited by applicant]
CN 106884014A · 2017 [cited by applicant]
CN 108330147A · 2018 [cited by applicant]
WO 2004096993A2 · 2004 [cited by applicant]
WO 2005033321A2 · 2005 [cited by applicant]
WO 2010138263A2 · 2010 [cited by applicant]
WO 2011133890A1 · 2011 [cited by applicant]
WO 2012109570A1 · 2012 [cited by applicant]
WO 2012145601A2 · 2012 [cited by applicant]
WO 2015038958A1 · 2015 [cited by applicant]
WO 2015121501A1 · 2015 [cited by applicant]
WO 2015164757A1 · 2015 [cited by applicant]
WO 2016065001A1 · 2016 [cited by applicant]
WO 2016073693A2 · 2016 [cited by applicant]
WO 2016081811A1 · 2016 [cited by applicant]
WO 2016126857A1 · 2016 [cited by applicant]
WO 2016164642A1 · 2016 [cited by applicant]
WO 2017058892A2 · 2017 [cited by applicant]
WO 2017100671A1 · 2017 [cited by applicant]
WO 2017143100A1 · 2017 [cited by applicant]
WO 2018022905A2 · 2018 [cited by applicant]
WO 2018035213A1 · 2018 [cited by applicant]
WO 2018119330A2 · 2018 [cited by applicant]
WO 2018226785A1 · 2018 [cited by applicant]
WO 2019006043A1 · 2019 [cited by applicant]
WO 2019006418A2 · 2019 [cited by applicant]
WO 2019028306A2 · 2019 [cited by applicant]
WO 2019060454A2 · 2019 [cited by applicant]
WO 2019068854A1 · 2019 [cited by applicant]
WO 2019169132A1 · 2019 [cited by applicant]
WO 2019213668A1 · 2019 [cited by applicant]
WO 2019222329A1 · 2019 [cited by applicant]
WO 2019222441A1 · 2019 [cited by applicant]
WO 2019222444A2 · 2019 [cited by applicant]
WO 2020014471A1 · 2020 [cited by applicant]
WO 2020028751A2 · 2020 [cited by applicant]
WO 2020068990A1 · 2020 [cited by applicant]
WO 2020072683A1 · 2020 [cited by applicant]
WO 2020077165A1 · 2020 [cited by applicant]
WO 2020154324A1 · 2020 [cited by applicant]
WO 2020160337A1 · 2020 [cited by applicant]
WO 2020160508A1 · 2020 [cited by applicant]
WO 2020191300A1 · 2020 [cited by applicant]
WO 2020193799A1 · 2020 [cited by applicant]
WO 2020205889A1 · 2020 [cited by applicant]
WO 2020206189A1 · 2020 [cited by applicant]
WO 2020210655A1 · 2020 [cited by applicant]
WO 2020219933A1 · 2020 [cited by applicant]
WO 2020219988A2 · 2020 [cited by applicant]
WO 2020223280A1 · 2020 [cited by applicant]
WO 2021025995A1 · 2021 [cited by applicant]
WO 2021073568A1 · 2021 [cited by applicant]
WO 2021113512A1 · 2021 [cited by applicant]
WO 2021202651A1 · 2021 [cited by applicant]
WO 2021216456A2 · 2021 [cited by applicant]
WO 2021222831A2 · 2021 [cited by applicant]
WO 2021226008A1 · 2021 [cited by applicant]
WO 2021230987A1 · 2021 [cited by applicant]
WO 2021242909A1 · 2021 [cited by applicant]
WO 2022040527A2 · 2022 [cited by applicant]
WO 2022076750A2 · 2022 [cited by applicant]
WO 2022187548A1 · 2022 [cited by applicant]
WO 2022221400A2 · 2022 [cited by applicant]
WO 2022221404A2 · 2022 [cited by applicant]
WO 2022221420A2 · 2022 [cited by applicant]
WO 2022221421A2 · 2022 [cited by applicant]
WO 2022235702A1 · 2022 [cited by applicant]
WO 2023004416A1 · 2023 [cited by applicant]
WO 2023044306A1 · 2023 [cited by applicant]
WO 2023049710A1 · 2023 [cited by applicant]
WO 2023044483A2 · 2023 [cited by applicant]
WO 2023091934A1 · 2023 [cited by applicant]
WO 2023081648A1 · 2023 [cited by applicant]
WO 2023091948A1 · 2023 [cited by applicant]
WO 2023091949A2 · 2023 [cited by applicant]
WO 2023092002A2 · 2023 [cited by applicant]
WO 2023092004A1 · 2023 [cited by applicant]
WO 2023154693A1 · 2023 [cited by applicant]
WO 2023168333A1 · 2023 [cited by applicant]
WO 2023183582A2 · 2023 [cited by applicant]
WO 2023183583A2 · 2023 [cited by applicant]
WO 2023201207A1 · 2023 [cited by applicant]
WO 2023215546A2 · 2023 [cited by applicant]
WO 2023225508A2 · 2023 [cited by applicant]
WO 2023220695A2 · 2023 [cited by applicant]
WO 2023244919A1 · 2023 [cited by applicant]
WO 2023244920A2 · 2023 [cited by applicant]
WO 2023235791A1 · 2023 [cited by applicant]
WO 2023240236A1 · 2023 [cited by applicant]
WO 2023250388A1 · 2023 [cited by applicant]
WO 2024006741A1 · 2024 [cited by applicant]
WO 2024011112A1 · 2024 [cited by applicant]
WO 2024030976A2 · 2024 [cited by applicant]
WO 2024059739A1 · 2024 [cited by applicant]
WO 2024086628A2 · 2024 [cited by applicant]
WO 2024086747A1 · 2024 [cited by applicant]
WO 2024092164A1 · 2024 [cited by applicant]
WO 2024100633A1 · 2024 [cited by applicant]
WO 2024191778A1 · 2024 [cited by applicant]
WO 2024226761A2 · 2024 [cited by applicant]
WO 2024226790A1 · 2024 [cited by applicant]
WO 2024228943A1 · 2024 [cited by applicant]
WO 2024229125A2 · 2024 [cited by applicant]
WO 2024229161A1 · 2024 [cited by applicant]
WO 2024229163A1 · 2024 [cited by applicant]
WO 2024229164A2 · 2024 [cited by applicant]
WO 2024229167A1 · 2024 [cited by applicant]
WO 2024229173A2 · 2024 [cited by applicant]
WO 2024229389A1 · 2024 [cited by applicant]
WO 2024229425A1 · 2024 [cited by applicant]
WO 2024238579A2 · 2024 [cited by applicant]
WO 2024238684A1 · 2024 [cited by applicant]
WO 2025038430A1 · 2025 [cited by applicant]
WO 2025038795A1 · 2025 [cited by applicant]
WO 2025038796A1 · 2025 [cited by applicant]
WO 2025038800A1 · 2025 [cited by applicant]
WO 2025038802A1 · 2025 [cited by applicant]
WO 2025038805A1 · 2025 [cited by applicant]
U.S. Appl. No. 18/998,358, filed Jan. 24, 2025, Mathieu Emmanuel Nonnenmacher et al. [cited by applicant]
U.S. Appl. No. 18/862,369, filed Nov. 1, 2024, Dan Richard Laks et al. [cited by applicant]
Abeliovich, A. et al. “Gene Therapy for Parkinson's Disease Associated with GBA1 Mutations.” Journal of Parkinson's Disease vol. 11,s2 (2021): S183-S188. [cited by applicant]
Adachi et al. “A new recombinant adeno-associated virus (AAV)-based random peptide display library system: infection-defective AAV1.9-3 as a novel detargeted platform for vector evolution,” Gene Therapy and Regulation (… [cited by applicant]
Adachi et al., “Drawing a high-resolution functional map of adeno-associated virus capsid by massively parallel sequencing,” Nature Communications (2014) vol. 5, article 3075, 14 pages. [cited by applicant]
Adachi, M. et al. “A segment of the Mecp2 promoter is sufficient to drive expression in neurons.” Human Molecular Genetics vol. 14,23 (2005): 3709-22. [cited by applicant]
Albright et al. “Modulation of sialic acid dependence influences the central nervous system transduction profile of adeno-associated viruses,” Journal of Virology, 2019, vol. 93, Issue 11, pp. 1-15. [cited by applicant]
Anonymous: “capsid-associated protein VP80 [Spodoptera littoralis nucleopolyhedrovirus]—Protein—NCBI”, (Feb. 15, 2013), pp. 1-1, Retrieved from the Internet: URL:https://www.ncbi.nlm.nih.gov/protein/AGE89944 [retrieved … [cited by applicant]
Anonymous: “toxin-antitoxin system YwqK family antitoxin [ [cited by applicant]
Bryant et al. “Deep diversification of an AAV capsid protein by machine learning,” Nature Biotechnology, 2021, vol. 39, pp. 691-696. [cited by applicant]
Büning, H. & Srivastava, A. “Capsid Modifications for Targeting and Improving the Efficacy of AAV Vectors.” Molecular Therapy—Methods & Clinical Development vol. 12 (2019): 248-265. [cited by applicant]
Challis et al. “Systemic AAV vectors for widespread and targeted gene delivery in rodents,” Nature Protocols (2019) vol. 14, pp. 379-414. [cited by applicant]
Chen et al. “Efficient Gene Delivery and Expression in Pancreas and Pancreatic Tumors by Capsid-Optimized AAV8 Vectors,” Human Gene Therapy Methods (2017) vol. 28, No. 1, pp. 49-59. [cited by applicant]
Chen et al. “Targeting the Rodent Peripheral Nervous System Efficiently and with Greater Specificity through Intravenous Delivery of AAV Capsids Evolved by Multiplexed-CREATE,” Molecular Therapy (2020) vol. 28, No. 4S1,… [cited by applicant]
Child, M.A. et al. “High-resolution Quantitative Analysis of Multiple AAV Capsids in Rodent and Primate Models Using Multiplexed Reporter Protein Tagging Platform.” Voyager Therapeutics. ASGCT 27th Annual Meeting 2024, … [cited by applicant]
Choi et al., “AAV Hybrid Serotypes: Improved Vectors for Gene Delivery,” Current Gene Therapy (2005) vol. 5, No. 3, pp. 209-210. [cited by applicant]
Davidsson et al. “A systematic capsid evolution approach performed in vivo for the design of AAV vectors with tailored properties and tropism,” PNAS, 2019, vol. 116, No. 52, pp. 27053-27062. [cited by applicant]
Deverman et al. “Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain,” Nat Biotechnol. (2016) vol. 34, No. 2, pp. 204-209. [cited by applicant]
Dimattia et al., “Structural Insight into the Unique Properties of Adeno-Associated Virus Serotype 9,” J Virol (2012) vol. 86, No. 12, pp. 6947-6958. [cited by applicant]
Fischell, J.M. and Fishman, P.S. “A Multifaceted Approach to Optimizing AAV Delivery to the Brain for the Treatment of Neurodegenerative Diseases.” Frontiers in Neuroscience vol. 15, article 747726 (2021). [cited by applicant]
Flytzanis et al. “Broad gene expression throughout the mouse and marmoset brain after intravenous delivery of engineered AAV capsids,” bioRxiv Preprint Server (2020) Doi: https://doi.org/10.1101/2020.06.16.152975, 21 pa… [cited by applicant]
Gao, G. et al. “Clades of Adeno-associated viruses are widely disseminated in human tissues,” Journal of Virology vol. 78,12 (2004): 6381-8. [cited by applicant]
Gessler et al., “Intravenous infusion of AAV for widespread gene delivery to the nervous system,” Methods Mol. Biol., 2019, vol. 1950, pp. 143-163. [cited by applicant]
Goertsen et al. “AAV capsid variants with brain-wide transgene expression and decreased liver targeting after intravenous delivery in mouse and marmoset,” Nature Neuroscience, 2022, vol. 25, pp. 106-115. [cited by applicant]
Goertsen et al. “Transduction Profiles of Engineered Adeno-Associated Viral Capsids in Mouse and Marmoset,” Molecular Therapy (2020) vol. 28, No. 4S1, pp. 269-270, Abstract 609. [cited by applicant]
Grannan, M.D. et al. “Intravenous Delivery of AAV Gene Therapy for the Treatment of SOD1-ALS Provides Broad SOD1 Lowering in NHP.” Molecular Therapy, vol. 32 No 4S1 (2024): 769-770, Abstract 1647. [cited by applicant]
Grannan, M.D. et al. “Intravenous Delivery of AAV Gene Therapy for the Treatment of SOD1-ALS Provides Broad SOD1 Lowering in NHP.” Voyager Therapeutics. ASGCT 27th Annual Meeting 2024, May 7-11, 2024, Baltimore, MD, USA. [cited by applicant]
Gray, S.J. et al. “Optimizing promoters for recombinant adeno-associated virus-mediated gene expression in the peripheral and central nervous system using self-complementary vectors.” Human Gene Therapy vol. 22,9 (2011)… [cited by applicant]
Hanlon et al. “Selection of an efficient AAV vector for robust CNS transgene expression,” Molecular Therapy: Methods & Clinical Development, 2019, vol. 15, pp. 320-332. [cited by applicant]
Hoffman, B. et al. “Identification and Characterization of a Highly Conserved Cell Surface Receptor Utilized by Engineered BBB-Penetrant AAV Capsids with Enhanced Brain Tropism in Non-Human Primates and Mice.” Voyager T… [cited by applicant]
Hoffman, B. et al. “Identification and Characterization of a Highly Conserved Cell Surface Receptor Utilized by Engineered BBB-Penetrant AAV Capsids with Enhanced Brain Tropism in Non-Human Primates and Mice.” Molecular… [cited by applicant]
Hoffman, B. et al. “Identification of a cell surface receptor utilized by an engineered BBB-penetrant capsid family with enhanced brain tropism in non-human primates and mice.” Human Gene Therapy vol. 33: A2-A212 (Dec. … [cited by applicant]
Hoffman, B.A. et al. “Discovery and Characterization of Novel Cross-Species BBB-Penetrant Capsids.” Voyager Therapeutics. ASGCT 26th Annual Meeting 2023, May 16-20, 2023, Los Angeles, CA, USA. [cited by applicant]
Hoffman, B.A. et al. “Identification of a Cell Surface Receptor Utilized by an Engineered BBB-Penetrant Capsid Family with Enhanced Brain Tropism in Non-Human Primates and Mice.” Voyager Therapeutics. ESGCT—29th Congres… [cited by applicant]
Huang et al. “Cell Type-Specific TRAnscriptionDependent Directed Evolution (TRADE) Identifies Novel AAV Capsids Capable of Enhanced Neuronal Transduction in Mice and Non-Human Primates,” Molecular Therapy (2019) vol. 27… [cited by applicant]
Huang et al. “Delivering genes across the blood-brain barrier: LY6A, a novel cellular receptor for AAV-PHP.B capsids,” PLOS One (2019) vol. 14, No. 11, e0225206, pp. 1-17. [cited by applicant]
Ibe, M.et al. “Role of strong anchor residues in the effective binding of 10-mer and 11-mer peptides to HLA-A*2402 molecules,” Immunogenetics vol. 44, 4, (1996): 233-241. [cited by applicant]
International Search Report and Written Opinion for International Application No. PCT/US2021/025061 dated Sep. 20, 2021. [cited by applicant]
International Search Report and Written Opinion for International Patent Application No. PCT/US2021/025072 dated Jul. 26, 2021. [cited by applicant]
International Search Report and Written Opinion from International Patent Application No. PCT/US2019/054345 dated Jan. 24, 2020. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2022/079060 dated Mar. 6, 2023. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2022/079963 dated May 9, 2023. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2022/080035 dated Apr. 3, 2023. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2022/080040 dated Mar. 1, 2023. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2023/067749 dated Sep. 29, 2023. [cited by applicant]
International Search Report and Written Opinion of International Patent Application No. PCT/US2022/079964 dated Jun. 9, 2023. [cited by applicant]
Invitation to Pay Additional Fees and Partial Search Report from International Application No. PCT/US2021/025061 dated Jul. 27, 2021. [cited by applicant]
Ishan, S. et al. “Establishment of a Predictive Transcytosis Model to Recapitulate Capsid-Receptor Interaction and Phenotype of BBB-penetrant AAV Variant.” Voyager Therapeutics. ASGCT 27th Annual Meeting 2024, May 7-11,… [cited by applicant]
Ising, C. et al. “AAV-mediated expression of anti-tau scFvs decreases tau accumulation in a mouse model of tauopathy.” The Journal of Experimental Medicine vol. 214, 5 (2017): 1227-1238. [cited by applicant]
Khalid, A. et al. “Evaluation of Cross-species Expression Across Four Species and Cellular Tropism of VCAP-102, an Engineered Blood-brain Barrier-penetrating AAV Derived Capsid from TRACER Platform Screens.” Voyager The… [cited by applicant]
Khalid, H. et al. “Evaluation of Cross-Species Expression Across Four Species and Cellular Tropism of VCAP-102, an Engineered Blood-Brain Barrier-Penetrating AAV.” Molecular Therapy, vol. 32 No 4S1 (2024): 685, Abstract… [cited by applicant]
Kienle et al. “Secrets to finding the ideal mate: New insights into parameters that govern successful Adeno-associated virus (AAV) vector evolution,” Dissertation, University Heidelberg (2014) pp. 1-194. [cited by applicant]
Kotchey, N. M. et al. “A potential role of distinctively delayed blood clearance of recombinant adeno-associated virus serotype 9 in robust cardiac transduction.” Molecular Therapy : The Journal of the American Society … [cited by applicant]
Kotterman et al. “4D-C102, a novel muscle-tropic AAV variant demonstrates superior gene delivery in cardiac and skeletal muscle tissues versus wild-type AAV in human cells and non-human primates.” [cited by applicant]
Kotterman et al. “Engineering adeno-associated viruses for clinical gene therapy,” Nature Reviews Genetics (2014) vol. 15, pp. 445-451. [cited by applicant]
Kotterman et al., “Directed evolution of AAV targeting lung epithelia using aerosol delivery identifies 4D-A101, a variant demonstrating robust gene delivery in non-human primates” Abstract 1336, 31 pages. [cited by applicant]
Kumar et al. “Evolution and Investigation of Engineered AAV Capsids Exhibiting Enhanced Transduction of the Central Nervous System with or without Murine Strain Specificity,” Molecular Therapy (2020) vol. 28, No. 4S1, p… [cited by applicant]
Kumar et al. “Multiplexed Cre-dependent selection yields systemic AAVs for targeting distinct brain cell types,” Nature Methods (2020) vol. 17, No. 5, pp. 541-550. [cited by applicant]
Li et al. “A Novel AAV Capsid with a Potential of Crossing NHP Blood-Brain Barrier,” Molecular Therapy (2020) vol. 28, No. 4S1, pp. 253, Abstract 572. [cited by applicant]
Liu, W. et al. “AAV Gene Delivery of the Anti-Tau Antibody PHF1 Reduces Brain Tau Pathology in P301L Mice,” Molecular Therapy vol. 23, Supplement 1 (2015): S237, Abstract 596. [cited by applicant]
Liu, W. et al. “Efficacy of a vectorized anti-tau antibody using systemic dosing of a blood brain barrier penetrant AAV capsid in mouse models of tauopathies.” Alzheimer's & Dementia vol. 17, No. S9 (2021): e053341. [cited by applicant]
Marsic et al. “High-accuracy biodistribution analysis of adeno-associated virus variants by double barcode sequencing,” Molecular Therapy—Methods & Clinical Development (2015) vol. 2, 15041. [cited by applicant]
Marsic, D. et al. “Vector design Tour de Force: integrating combinatorial and rational approaches to derive novel adeno-associated virus variants.” Molecular Therapy : The Journal of the American Society of Gene Therapy… [cited by applicant]
Maura, D. et al. “Discovery of TRACER AAV Capsids Escaping Pre-Existing Neutralizing Antibodies.” Molecular Therapy, vol. 32 No 4S1 (2024): 475, Abstract 973. [cited by applicant]
Maura, D. et al. “Discovery of TRACER AAV Capsids Escaping Pre-existing Neutralizing Antibodies.” Voyager Therapeutics. ASGCT 27th Annual Meeting 2024, May 7-11, 2024, Baltimore, MD, USA. [cited by applicant]
Moyer, T. “Continued directed evolution of VCAP-101 and VCAP-102 identifies second generation capsids with increased brain tropism in non-human primates and mice (#119).” Voyager Therapeutics. ASGCT 27th Annual Meeting.… [cited by applicant]
Moyer, T. “Directed Evolution of AAV9 Peptide Display Libraries Identifies a Family of Cross-Species Variants With Enhanced Brain Tropism in Non-Human Primates and Mice Following Systemic Administration.” Voyager Therap… [cited by applicant]
Moyer, T. “Directed Evolution of an AAV9 Library Identifies a Capsid Variant with Enhanced Brain Tropism and Liver Detargeting in Non-Human Primates and Mice Following Systemic Administration.” Voyager Therapeutics. AAV… [cited by applicant]
Moyer, T. et al. “Continued Directed Evolution of VCAP-101 and VCAP-102 Identifies Second Generation Capsid Variants with Increased Brain Tropism and in Non-Human Primates and Mice.” Molecular Therapy, vol. 32 No 4S1 (2… [cited by applicant]
Moyer, T. et al. “Directed Evolution of AAV9 Peptide Display Libraries Identifies a Family of Cross-Species Variants with Enhanced Brain Tropism in Non-Human Primates and Mice Following Systemic Administration.” Molecul… [cited by applicant]
Moyer, T. et al. “Directed Evolution of an AAV9 Library Identifies a Capsid Variant with Enhanced Brain Tropism and Liver De-Targeting in Non-Human Primates and Mice Following Systemic Administration.” Molecular Therapy… [cited by applicant]
Moyer, T.C. et al. “Highly conserved brain vascular receptor ALPL mediates transport of engineered viral vectors across the blood-brain barrier,” bioRxiv 2024.03.12.584703. [cited by applicant]
Nonnenmacher et al. “RNA-Driven Evolution of AAV Capsid Libraries Identifies Variants with High Transduction Efficiency in Non-Human Primate Central Nervous System,” Molecular Therapy (2021) vol. 29, No. 4S1, pp. 25-26,… [cited by applicant]
Nonnenmacher et al. “Targeted In Vivo Biopanning of AAV Capsid Libraries Using Cell Type-Specific RNA Expression,” Molecular Therapy (2019) vol. 27, No. 4S1, pp. 27, Abstract 48. [cited by applicant]
Nonnenmacher et al., “Dose-response evaluation of 9P801, an engineered AAV capsid with high BBB penetration and CNS transduction in non-human primates,” ESGCT 29th Annual Congress in collaboration with BSGCT Edinburgh, … [cited by applicant]
Nonnenmacher, M. “Iterative Evolution of Cross-Species BBB-Penetrant Capsids.” Voyager Therapeutics. In Vivo Gene Therapy & Genome Editing Summit, Oct. 30-Nov. 2, 2023, Miami, FL, USA, talk was on Oct. 31, 2023. [cited by applicant]
Nonnenmacher, M. “TracerTM capsid discovery platform.” Voyager Therapeutics. In Vivo Gene Therapy & Genome Editing Summit, Oct. 31-Nov. 2, 2022, Miami, FL, USA. [cited by applicant]
Nonnenmacher, M. et al. “Rapid evolution of blood-brain-barrier-penetrating AAV capsids by RNA-driven biopanning.” Molecular Therapy: Methods & Clinical Development, vol. 20 (2021): 366-378. [cited by applicant]
Nonnenmacher. “RNA-driven Evolution of AAV Capsid Libraries Identifies Variants with High Transduction Efficiency in Non-Human Primate Central Nervous System,” American Society of Cell + Gene Therapy Annual Meeting, 202… [cited by applicant]
Ogden et al. “Comprehensive AAV capsid fitness landscape reveals a viral gene and enables machine-guided design,” Science, 2019, 366(6469), pp. 1139-1143. [cited by applicant]
Pekrun et al. “Screening of Barcoded Capsid Shuffled AAV Libraries Results in the Selection of Capsids with Enhanced Transduction Efficiency for Human Islets,” Molecular Therapy (2019) vol. 26, No. 5S1, pp. 41, Abstract… [cited by applicant]
Puglisi, M. et al. “Targeting astrocytes by non-invasive viral vectors and probing the influence of age and inducibile expression of the reprogramming factors in vivo.” Presented at Cell State Conversions, Cold Spring H… [cited by applicant]
Qiao, C. et al. “Liver-specific microRNA-122 target sequences incorporated in AAV vectors efficiently inhibits transgene expression in the liver.” Gene Therapy vol. 18,4 (2011): 403-10. [cited by applicant]
Rees, H. A. and Liu, D. R. “Base editing: precision chemistry on the genome and transcriptome of living cells.” Nature Reviews. Genetics vol. 19,12 (2018): 770-788. [cited by applicant]
Ren, X. et al. “Establishment of a Predictive Transcytosis Model to Recapitulate Capsid-Receptor Interaction and Phenotype of BBB Penetrant AAV Variants.” Molecular Therapy, vol. 32 No 4S1 (2024): 476, Abstract 976. [cited by applicant]
Song et al. “Strong Alpha Cell Preference of the AAV Strains That Best Transduce Human Pancreatic Islets in Vitro,” Molecular Therapy (2017) vol. 25, No. 5S1, pp. 47, Abstract 98. [cited by applicant]
Stanton, A. C. et al. “Systemic administration of novel engineered AAV capsids facilitates enhanced transgene expression in the macaque CNS.” Med vol. 4, 1 (2023): 31-50.e8. Epub: Nov. 22, 2022. [cited by applicant]
Stoica, L. and Sena-Esteves, M. “Adeno Associated Viral Vector Delivered RNAi for Gene Therapy of SOD1 Amyotrophic Lateral Sclerosis.” Frontiers in Molecular Neuroscience vol. 9 article 56 (2016). [cited by applicant]
Voyager Therapeutics, “Intravenous Delivery of Novel AAV Capsids”, Oct. 20, 2017, Retrieved from the Internet: URL:https://www.voyagertherapeutics.com/wp-content/uploads/2017/10/ESGCT_slides.pdf [retrieved on Oct. 9, 20… [cited by applicant]
Wang et al. “Adeno-associated virus vector as a platform for gene therapy delivery,” Nat Rev Drug Discov., 2019, vol. 18, 5, pp. 358-378. [cited by applicant]
Yan et al., “Two-Amino Acid Molecular Switch in an Epithelial Morphogen That Regulates Binding to Two Distinct Receptors,” Science (2000) vol. 290, pp. 523-527. [cited by applicant]
Yin, Z. et al., “Research Advances on Increasing the Transduction Efficiency of Recombinant Adeno-associated Viral Vectors.” Biotechnology Bulletin vol. 31, 9 (2015): 49-59. [cited by applicant]
Afione, S. et al. “Identification and mutagenesis of the adeno-associated virus 5 sialic acid binding region.” Journal of Virology vol. 89,3 (2015): 1660-72. [cited by applicant]
Almeida, C F et al. “Promising AAV. U7snRNAs vectors targeting DMPK improve DM1 hallmarks in patient-derived cell lines.” Frontiers in Cell and Developmental Biology vol. 11 1181040. Jun. 15, 2023. [cited by applicant]
Bremel, R. et al. “Bioinformatic Processes for Determination of Peptide Binding”, GS_PROT_ALERT:WO20130401421 Mar. 2013 (Mar. 21, 2013), retrieved from WO2013040142, Database Accession No. GS_PROT_ALERT:WO2013040142.974… [cited by applicant]
Choudhury, S. et al. “Peptide Grafting Yields Novel AAV Vectors Capable of Enhanced Neuronal Transduction in Adult Mouse Brain.” Molecular Therapy vol. 22, Supplement 1 (2014): S109-S110, Abstract 285. [cited by applicant]
Govindasamy, L. et al. “Structural insights into adeno-associated virus serotype 5.” Journal of Virology vol. 87,20 (2013): 11187-99. [cited by applicant]
Hida, K. et al. “Sites in the AAV5 capsid tolerant to deletions and tandem duplications.” Archives of Biochemistry and Biophysics vol. 496, 1 (2010): 1-8. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2023/062101 dated Jul. 24, 2023. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2023/069146 dated Nov. 9, 2023. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2023/069621 dated Oct. 16, 2023. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2024/041668 dated Dec. 3, 2024. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2024/042395 dated Dec. 2, 2024. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2024/042397 dated Dec. 3, 2024. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2024/042405 dated Dec. 2, 2024. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2024/042407 dated Dec. 2, 2024. [cited by applicant]
International Search Report and Written Opinion in International Patent Application No. PCT/US2024/042411 dated Dec. 2, 2024. [cited by applicant]
Jose, A. et al. “High-Resolution Structural Characterization of a New Adeno-associated Virus Serotype 5 Antibody Epitope toward Engineering Antibody-Resistant Recombinant Gene Delivery Vectors.” Journal of Virology vol.… [cited by applicant]
Lin, J. et al. “An Evolved AAV Variant with Enhanced Brain and Spinal Cord Tropism and Translation across Primate Species,” Molecular Therapy vol. 31 No. 4S1, Apr. 2023, Abstract 1393. [cited by applicant]
Lin, J. et al. “An Evolved AAV Variant with Enhanced Brain and Spinal Cord Tropism and Translation across Primate Species.” Voyager Therapeutics. ASGCT Annual Meeting 2023, May 16-May 20, 2023, Los Angeles, CA, USA, (#1… [cited by applicant]
Maura, D. et al. “Stepwise Evolution of the AAV5-Derived Capsid VCAP-100 Identifies Novel Variants with Improved CNS Transduction and Liver Detargeting Following Systemic Injection,” Molecular Therapy vol. 31 No. 4S1, A… [cited by applicant]
Maura, D. et al. “Stepwise evolution of the AAV5-derived capsid VCAP-100 identifies novel variants with improved CNS transduction and liver detargeting following systemic injection.” Voyager Therapeutics. ASGCT Annual M… [cited by applicant]
Medici, G. et al., “Expression of a Secretable, Cell-Penetrating CDKL5 Protein Enhances the Efficacy of AAV Vector-Mediated Gene Therapy for CDKL5 Deficiency Disorder,” Dec. 17, 2021 (Dec. 17, 2021), p. 1-25, Retrieved … [cited by applicant]
Nonnenmacher, M. et al. “Directed Evolution of an AAV5 Capsid Library Identifies a Variant with Enhanced Transduction in Non-Human Primate and Rodent Brain Following Systemic Administration,” Molecular Therapy vol. 30 N… [cited by applicant]
Nonnenmacher, M. et al. “Directed Evolution of an AAV5 Capsid Library Identifies a Variant with Enhanced Transduction in Non-Human Primate and Rodent Brain Following Systemic Administration.” Voyager Therapeutics. ASGCT… [cited by applicant]
Qian, R. et al. “Directed Evolution of AAV Serotype 5 for Increased Hepatocyte Transduction and Retained Low Humoral Seroreactivity.” Molecular Therapy. Methods & Clinical Development vol. 20 122-132. Oct. 20, 2020. [cited by applicant]
Shah, I. et al. “Establishment of a Predictive Transcytosis Model to Recapitulate Capsid-Receptor Interaction and Phenotype of BBB-penetrant AAV Variant.” Voyager Therapeutics. ASGCT 27th Annual Meeting 2024, May 7-11, … [cited by applicant]
Walters, R. W. et al. “Structure of adeno-associated virus serotype 5.” Journal of Virology vol. 78,7 (2004): 3361-71. [cited by applicant]
Zhang, X. et al. “Blood-brain barrier shuttle peptides enhance AAV transduction in the brainadministration.” Biomaterials vol. 176 (2018): 71-83. [cited by applicant]
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