Brain tractography by shading fiber bundles
Methods, systems, and apparatus for brain tractography by shading fiber bundles. In one aspect, a method includes forwarding patient brain data for presentation to a user; receiving, from the user, a selection of a brain parcel in response to presentation of the patient brain data; forwarding, for display to the user, tract health data comprising i) tract data for tracts connected to the brain parcel and ii) at least one metric for the tracts, the metric reflecting the health of the tracts; and taking an action in response to forwarding the tract health data.
1 . A computer implemented method comprising:
forwarding, by a computer system and to a user device, patient brain data for presentation to a user;
receiving, by the computer system and from the user device, a selection of a brain parcel in response to presentation of the patient brain data;
in response to receiving the selection of the brain parcel:
identifying, by the computer system, tracts connected to the selected brain parcel; and
for at least one tract connected to the selected brain parcel:
dividing, by the computer system, the tract into a plurality of segments; and
retrieving, by the computer system, values of at least one metric for each segment of the tract;
forwarding, by the computer system and for display by the user device, tract health data comprising i) tract data for the at least one tracts connected to the selected brain parcel and ii) the values of the at least one metric for each segment of the at least one tracts connected to the selected brain parcel, the at least one metric reflecting the health of the at least one tracts connected to the selected brain parcel; and
taking an action in response to forwarding the tract health data, comprising storing, by the computer system, the tract health data in a data store.
2 . The method of claim 1 , wherein the at least one metric represents a deviation of the health of the tracts from a healthy control sample of tracts.
3 . The method of claim 2 , wherein the tracts connected to the selected brain parcel are displayed by the user device with a gradation of color that represents the deviation of the health of the tracts from a healthy control sample of tracts.
4 . The method of claim 2 , wherein the metric comprises a Z-score.
5 . The method of claim 1 , wherein only segments with respective metric values that are outside of a predetermined acceptable range are colored in the display by the user device.
6 . The method of claim 1 , further comprising receiving, from the user device, a selection of the at least one metric.
7 . The method of claim 1 , wherein the display by the user device shows the selected brain parcel.
8 . The method of claim 1 , further comprising receiving, from the user device, a selection of multiple brain parcels, wherein the multiple brain parcels are related to a brain network, and wherein the tract health data forwarded for display by the user comprises tract health data for tracts connected to the multiple brain parcels.
9 . The method of claim 8 , wherein the display by the user device shows cortical areas of the brain related to the brain network.
10 . The method of claim 1 , wherein the at least one metric comprises a metric that represents a measures of white matter health or integrity.
11 . The method of claim 1 , wherein the at least one metric comprises fractional anisotropy, mean diffusivity, or bundle thickness.
12 . The method of claim 1 , further comprising receiving, from the user device, selection of a tumor, wherein in response to receiving the selection of the tumor the display by the user device shows the tumor.
13 . The method of claim 1 , wherein forwarding patient brain data for presentation to the user comprises forwarding, for display by the user device, data that represents a three dimensional image of a brain, wherein the three dimensional image of the brain shows multiple tracts.
14 . The method of claim 1 , wherein taking an action in response to forwarding the tract health data further comprises initiating a clinical or therapeutic treatment.
15 . A computer system comprising:
one or more computers, and
one or more computer-readable media coupled to the one or more computers having instructions stored thereon which, when executed by the one or more computers, cause the one or more computers to perform operations comprising:
forwarding, by the computer system and to a user device, patient brain data for presentation to a user;
receiving, by the computer system and from the user device, a selection of a brain parcel in response to presentation of the patient brain data;
in response to receiving the selection of the brain parcel:
identifying, by the computer system, tracts connected to the selected brain parcel; and
for at least one tract connected to the selected brain parcel:
dividing, by the computer system, the tract into a plurality of segments; and
retrieving by the computer system, values of at least one metric for each segment of the tract;
forwarding, by the computer system and for display by the user device, tract health data comprising i) tract data for the at least one tracts connected to the selected brain parcel and ii) the values of the at least one metric for each segment of the at least one tracts connected to the selected brain parcel, the at least one metric reflecting the health of the at least one tracts connected to the selected brain parcel; and
taking an action in response to forwarding the tract health data, comprising storing, by the computer system, the tract health data in a data store.
16 . The system of claim 15 , wherein the at least one metric represents a deviation of the health of the tracts from a healthy control sample of tracts.
17 . One or more non-transitory computer-readable media having instructions stored thereon that, when executed by one or more processors, cause performance of operations comprising:
forwarding, by a computer system and to a user device, patient brain data for presentation to a user;
receiving, by the computer system and from the user device, a selection of a brain parcel in response to presentation of the patient brain data;
in response to receiving the selection of the brain parcel:
identifying by the computer system, tracts connected to the selected brain parcel; and
for at least one tract connected to the selected brain parcel:
dividing, by the computer system, the tract into a plurality of segments; and
retrieving, by the computer system, values of at least one metric for each segment of the tract;
forwarding, by the computer system and for display by the user device, tract health data comprising i) tract data for the at least one tracts connected to the selected brain parcel and ii) the values of the at least one metric for each segment of the at least one tracts connected to the selected brain parcel, the at least one metric reflecting the health of the at least one tracts connected to the selected brain parcel; and
taking an action in response to forwarding the tract health data, comprising storing by the computer system, the tract health data in a data store.