IP Library Granted Patent US 12,492,229
Granted Patent B2
US 12,492,229 · App. 17/309,959 · Granted Dec 9, 2025

Antimicrobial peptides

Inventors: Hui Li (SuZhou, CN); Dilip M. Shah (St. Louis, MO)
Assignee: Donald Danforth Plant Science Center
C07K14/415A01N37/46A01N63/50A01P3/00A61P31/10C07K7/06C07K7/08C12N15/8282A61K38/00
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Quick Facts
Patent No.
US 12,492,229
App. No.
17/309,959
Granted
Dec 9, 2025
Kind
B2
Abstract

Antimicrobial SbDef1-type peptides and proteins are disclosed along with compositions comprising the SbDef1-type peptides and proteins and transgenic or genetically edited plants or microorganisms that express the SbDef1-type peptides and proteins to inhibit growth of pathogenic microbes. Such SbDef1-type peptides and proteins, compositions, plants, and microorganisms can provide for inhibition of microbial growth.

Claims (11)

1 . A method for reducing crop damage by a plant pathogenic microbe comprising the step of contacting a plant, a plant seed, or other part of said plant with an effective amount of a composition comprising an antimicrobial peptide comprising an amino acid sequence having at least 95% sequence identity across the entire length of SEQ ID NO: 1, wherein the antimicrobial peptide carries a net positive charge at neutral pH and comprises a defensin gamma core peptide carrying a net positive charge at neutral pH, said composition further comprising an agriculturally, pharmaceutically, or veterinary acceptable carrier, diluent, or excipient.

2 . The method of claim 1 , wherein the plant pathogenic microbe is a Fusarium sp., Alternaria sp., Verticillium sp., Phytophthora sp., Colletotrichum sp., Botrytis sp., Cercospora sp., Phakopsora sp., Rhizoctonia sp., Sclerotinia sp., Pythium sp., Phoma sp., Leptosphaeria sp., Gaeumannomyces sp., or Puccinia sp.

3 . The method of claim 1 , wherein the plant pathogenic microbe is a Fusarium sp., Alternaria sp., Phytophthora sp., or Botrytis sp.

4 . The method of claim 1 , wherein the defensin gamma core peptide comprises the amino acid sequence of SEQ ID NO: 3.

5 . The method of claim 4 , wherein the defensin gamma core peptide comprises the amino acid sequence of SEQ ID NO: 8.

6 . The method of claim 1 , wherein the antimicrobial peptide comprises SEQ ID NO: 1.

7 . The method of claim 1 , wherein the antimicrobial peptide comprises SEQ ID NO: 1, 5, 6, or 7.

8 . The method of claim 1 , wherein the composition further comprises an insecticide, attractant, sterilizing agent, acaricide, nematocide, or herbicide.

9 . The method of claim 1 , wherein the composition further comprises a fungicide.

10 . The method of claim 9 , wherein the fungicide comprises a polyoxine, nikkomycine, carboxy amide, aromatic carbohydrate, carboxine, morpholine, inhibitors of sterol biosynthesis, or an organophosphorous compound.

11 . The method of claim 9 , wherein the fungicide comprises an azole, triazole, and/or echinocandin fungicide.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 10, 2021
From: LI, HUI; SHAH, DILIP M.
To: DONALD DANFORTH PLANT SCIENCE CENTER
Reel/Frame 057127/0745 →
Continuity (2)
Provisional Application 62789035 · Jan 7, 2019
Related Publication 20220081475A1 · Mar 17, 2022
References Cited (53)
US 5421839A · Ulbrich et al. · 1995 [cited by applicant]
US 5538525A · Broekaert et al. · 1996 [cited by applicant]
US 6121436A · Liang et al. · 2000 [cited by applicant]
US 6911577B2 · Simmons · 2005 [cited by examiner]
US 7521535B2 · Zhang et al. · 2009 [cited by applicant]
US 7825297B2 · Shah et al. · 2010 [cited by applicant]
US 8163979B2 · Shah et al. · 2012 [cited by applicant]
US 10253328B2 · Shah · 2019 [cited by applicant]
US 20040064850A1 · Liang et al. · 2004 [cited by applicant]
US 20090197809A1 · Anderson · 2009 [cited by examiner]
US 20100113342A1 · Yount et al. · 2010 [cited by applicant]
US 20130117880A1 · Smith et al. · 2013 [cited by applicant]
US 20150283204A1 · Van Der Weerden et al. · 2015 [cited by applicant]
US 20150373995A1 · Smith et al. · 2015 [cited by applicant]
US 20190185877A1 · Boyle et al. · 2019 [cited by applicant]
US 20190194268A1 · Shah et al. · 2019 [cited by applicant]
US 20200060286A1 · Martinez et al. · 2020 [cited by applicant]
US 20220089661A1 · Li et al. · 2022 [cited by applicant]
WO 200011178A2 · 2000 [cited by applicant]
NCBI Accession KXG34059.1, 2017, www.ncbi.nlm.nih.gov/protein/KXG34059.1 (Year: 2017). [cited by examiner]
NCBI (https://www.ncbi.nlm.nih.gov/protein/KXG34059.1?report=genbank&log$=protalign&blast_rank=1&RID=E3ATEFB6016)—submitted Feb. 8, 2017) (Year: 2017). [cited by examiner]
Allen et al., “Plant defensins and virally encoded fungal toxin KP4 inhibit plant root growth,” Planta, Jan. 2008, vol. 227, Issue 2, pp. 331-339. [cited by applicant]
Avitabile et al., “Antimicrobial peptides from plants: stabilization of the y core of a tomato defensin by intramolecular disulfide bond,” Journal of Peptide Science, Feb. 2013, vol. 19, Issue 4, 22 pages. [cited by applicant]
El-Mounadi et al., “Antifungal mechanisms of a plant defensin MtDef4 are not conserved between the ascomycete fungi Neurospora crassa and Fusarium graminearum,” Molecular Microbiology, May 2016, vol. 100, No. 3, pp. 542… [cited by applicant]
International Search Report and Written Opinion in PCT/US2020/012565, mailed Jun. 9, 2020, 14 pages. [cited by applicant]
Kaur et al., “Subcellular targeting of an evolutionarily conserved plant defensin MtDef4.2 determines the outcome of blant-pathogen interaction in transgenic [cited by applicant]
Kerenga et al., “Salt-Tolerant Antifungal and Antibacterial Activities of Corn Defensin ZmD32,” Frontiers in Microbiology, Apr. 2019, vol. 10, Article 795, 13 pages. [cited by applicant]
Li et al., “Antifungal Potency and Modes of Action of a Novel Olive Tree Defensin Against Closely Related Ascomycete Fungal Pathogens,” Molecular Plant-Microbe Interactions, 2019, vol. 32, No. 12, pp. 1649-1664. [cited by applicant]
Munoz et al., “Specific domains of plant defensins differentially disrupt colony initiation, cell fusion and calcium homeostasis in Neurospora crassa,” Molecular Microbiology, 2014, vol. 92, No. 6, pp. 1357-1374. [cited by applicant]
Ramamoorthy et al., “Sphingolipid C-9 Methyltransferases Are Important for Growth and Virulence but Not for Sensitivity to Antifungal Plant Defensins in Fusarium graminearum,” Eukaryotic Cell, Feb. 2009, vol. 8, No. 2, … [cited by applicant]
Rigano et al., “A novel synthetic peptide from a tomato defensin exhibits antibacterial activities against Helicobacter bylori,” Journal of Peptide Science, Dec. 2012, vol. 18, No. 12, 8 pages. [cited by applicant]
Sagaram et al., “Structural and Functional Studies of a Phosphatidic Acid-Binding Antifungal Plant Defensin MtDef4: Identification of an RGFRRR Motif Governing Fungal Cell Entry,” PLoS One, Dec. 2013, vol. 8, Issue 12, … [cited by applicant]
Sagaram et al., “Structure-Activity Determinants in Antifungal Plant Defensins MsDef1 and MtDef4 with Different Modes of Action against Fusarium graminearum,” PLoS One, Apr. 2011, vol. 6, Issue 4, 13 pages. [cited by applicant]
Sathoff et al., “Plant Defensin Peptides have Antifungal and Antibacterial Activity Against Human and Plant Pathogens,” Phytopathology, 2019, vol. 109, No. 3, pp. 402-408. [cited by applicant]
Shah et al., “Antifungal peptides come of age,” Fungal Biology Reviews, 2013, vol. 26, pp. 107-108. [cited by applicant]
Spelbrink et al., “Differential Antifungal and Calcium Channel-Blocking Activity among Structurally Related Plant Defensins,” Plant Physiology, Aug. 2004, vol. 135, pp. 2055-2067. [cited by applicant]
Velivelli et al., “Modes of Action of a Bi-domain Plant Defensin MtDef5 Against a Bacterial Pathogen Xanthomonas campestris,” Frontiers in Microbiology, May 2018, vol. 9, Article 934, 9 pages. [cited by applicant]
Nodule cysteine-rich protein 13, A0AOU8SNQ0, UniProt, 2016, 5 pages. [cited by applicant]
Restriction Requirement in U.S. Appl. No. 17/309,960, mailed Jun. 29, 2023, 8 pages. [cited by applicant]
Unity Objection in U.S. Appl. No. 17/309,920, mailed Jun. 15, 2023, 11 pages. [cited by applicant]
De Beer et al., “Four plant defensins from an indigenous South African [cited by applicant]
Khan et al., “Plant defensins: types, mechanism of action and prospects of genetic engineering for enhanced disease resistance in plants,” 3 Biotech, May 2019, vol. 9, No. 192, 12 pages. [cited by applicant]
Lefevre et al., “Alanine-stretch scanning mutagenesis: a simple and efficient method to probe protein structure and function,” Nucleic Acids Research, Jan. 1997, vol. 25, No. 2, pp. 447-448. [cited by applicant]
Nasrollahi et al., “Evaluation of the antifungal activity of olive leaf aqueous extracts against Candida albicans PTCC-5027,” Current Medical Mycology, Dec. 2015, vol. 1, No. 4, pp. 37-39. [cited by applicant]
National Library of Medicine, “defensin-like protein 4 [ [cited by applicant]
Non-Final Office Action in U.S. Appl. No. 17/309,960, mailed Feb. 2, 2024, 33 pages. [cited by applicant]
Parisi et al., “The evolution, function and mechanisms of action for plant defensins,” Seminars in Cell & Developmental Biology, Apr. 2019, vol. 88, pp. 107-118. [cited by applicant]
Royal Botanic Gardens Kew, Plants of the World Online, “ [cited by applicant]
Van Der Weerden et al., “Plant defensins: Common fold, multiple functions,” Fungal Biology Reviews, Jan. 2013, vol. 26, pp. 121-131. [cited by applicant]
Terras et al, “Analysis of Two Novel Classes of Plant Antifungal Proteins from Radish ( [cited by applicant]
Kovaleva et al, “Plant Defensins from a Structural Perspective”, Int. J. Mol. Sci., Jul. 2020, 21, 5307; doi: 10.3390/ijms21155307, www.mdpi.com/journal/ijms. [cited by applicant]
Islam et al, “A novel bi-domain plant defensin MtDef5 with potent broad-spectrum antifungal activity binds to multiple phospholipids and forms oligomers”, Scientific Reports—7—16157—DOI: 10.1038/s41598-017-16508-w, Nov.… [cited by applicant]
Non-Final Office Action in U.S. Appl. No. 17/309,960, mailed May 29, 2025, 16 pages. [cited by applicant]