IP Library › Granted Patent US 12,492,238
Granted Patent B2
US 12,492,238 · App. 17/985,012 · Granted Dec 9, 2025

Glypican-3-binding fibronectin based scaffold molecules

Inventors: Dasa Lipovsek (Pepperell, MA); Joseph Toth (Waltham, MA); Ginger C. Rakestraw (Somerville, MA); Irvith M. Carvajal (Brighton, MA); Stanley Richard Krystek, Jr. (Ringoes, NJ); Steven R. O'Neil (Wayland, MA); Guodong Chen (East Brunswick, NJ); Richard Y. Huang (Bridgewater, NJ); Bryan C. Barnhart (Vancouver, CA); John Thomas Loffredo (Yardley, PA); Christina Terragni (Wilmington, MA)
Assignee: Bristol-Myers Squibb Company
C07K14/78A61K47/60A61K47/64A61K47/6435G01N33/6872A61K38/00
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Quick Facts
Patent No.
US 12,492,238
App. No.
17/985,012
Granted
Dec 9, 2025
Kind
B2
Abstract

Provided herein are polypeptides which include tenth fibronectin type III domains ( 10 Fn3) that bind to glypican-3. Also provided are fusion molecules comprising a 10 Fn3 domain that bind to glypican-3 for use in diagnostic and therapeutic applications. Glypican-3 10 Fn3 drug conjugates are also provided.

Claims (23)

1 . A method of producing a polypeptide comprising a tenth fibronectin type III ( 10 Fn3) domain comprising BC, DE and FG loops, wherein the polypeptide binds specifically to human glypican-3 (GPC3), and wherein

(a) the BC, DE and FG loops comprise SEQ ID NOs: 6, 7 and 8, respectively;

(b) the BC, DE and FG loops comprise SEQ ID NOs: 19, 20 and 21, respectively;

(c) the BC, DE and FG loops comprise SEQ ID NOs: 32, 33 and 34, respectively;

(d) the BC, DE and FG loops comprise SEQ ID NOs: 45, 46 and 47, respectively;

(e) the BC, DE and FG loops comprise SEQ ID NOs: 58, 59 and 60, respectively;

(f) the BC, DE and FG loops comprise SEQ ID NOs: 71, 72 and 73, respectively;

(g) the BC, DE and FG loops comprise SEQ ID NOs: 84, 85 and 86, respectively;

(h) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 101, respectively;

(i) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 129, respectively;

(j) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 156, respectively;

(k) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 183, respectively;

(l) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 210, respectively;

(m) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 237, respectively;

(n) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 264, respectively;

(o) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 291, respectively; or

(p) the BC, DE and FG loops comprise SEQ ID NOs: 99, 100 and 318, respectively, and

the method comprising culturing a cell expressing a nucleic acid encoding the polypeptide under conditions suitable for expressing the polypeptide, and purifying the polypeptide.

2 . The method of claim 1 , wherein the nucleic acid encodes a polypeptide comprising an amino acid sequence at least 90% identical to the amino acid sequence of any one of SEQ ID NOs: 5, 9-18, 22-31, 35-44, 48-57, 61-70, 74-83, 87-98, 102-128, 130-155, 157-182, 184-209, 211-236, 238-263, 265-290, 292-317 or 319-343.

3 . The method of claim 1 , wherein the nucleic acid encodes a polypeptide comprising an amino acid sequence selected from the group consisting of SEQ ID NOs: 5, 9-18, 22-31, 35-44, 48-57, 61-70, 74-83, 87-98, 102-128, 130-155, 157-182, 184-209, 211-236, 238-263, 265-290, 292-317 and 319-343.

4 . The method of claim 1 , wherein the nucleic acid encodes a polypeptide further comprising a heterologous protein.

5 . The method of claim 4 , wherein the heterologous protein comprises a polypeptide selected from the group consisting of a 10 Fn3 domain, an Fc, Fc fragment, transferrin, serum albumin, a serum albumin binding protein, and a serum immunoglobulin binding protein.

6 . The method of claim 1 , wherein the C-terminus of the 10 Fn3 domain comprises a moiety consisting of the amino acid sequence P m X n , wherein P is proline, each X is independently any amino acid, m is an integer that is at least 1 and n is 0 or an integer that is at least 1.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 16, 2022
From: LIPOVSEK, DASA; TOTH, JOSEPH; RAKESTRAW, GINGER C.; CARVAJAL, IRVITH M.; KRYSTEK, STANLEY RICHARD, JR.; O'NEIL, STEVEN R.; CHEN, GUODONG; HUANG, RICHARD Y.; BARNHART, BRYAN C.; LOFFREDO, JOHN THOMAS
To: BRISTOL-MYERS SQUIBB COMPANY
Reel/Frame 061787/0001 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 16, 2022
From: TERRAGNI, CHRISTINA
To: BRISTOL-MYERS SQUIBB COMPANY
Reel/Frame 061787/0014 →
Continuity (4)
Division 16751788 · Jan 24, 2020
Continuation 15760449
Provisional Application 62222633 · Sep 23, 2015
Related Publication 20230312686A1 · Oct 5, 2023
References Cited (30)
US 7115396B2 · Lipovsek et al. · 2006 [cited by applicant]
US 9260492B2 · Matschiner · 2016 [cited by applicant]
US 10584160B2 · Lipovsek et al. · 2020 [cited by applicant]
US 11524992B2 · Lipovsek et al. · 2022 [cited by applicant]
US 20080015339A1 · Lipovsek · 2008 [cited by examiner]
US 20120094909A1 · Camphausen et al. · 2012 [cited by applicant]
US 20190077844A1 · Lipovsek et al. · 2019 [cited by applicant]
US 20200262893A1 · Lipovsek et al. · 2020 [cited by applicant]
WO 9856915A2 · 1998 [cited by applicant]
WO 0232925A2 · 2002 [cited by applicant]
WO WO2009073115A1 · 2009 [cited by examiner]
WO 2009133208A1 · 2009 [cited by applicant]
WO 2009142773A2 · 2009 [cited by applicant]
WO 2011103105A1 · 2011 [cited by applicant]
WO 2011130324A1 · 2011 [cited by applicant]
WO 2012016245A2 · 2012 [cited by applicant]
WO 2012065978A1 · 2012 [cited by applicant]
WO 2012073992A1 · 2012 [cited by applicant]
WO WO2014043344A1 · 2014 [cited by examiner]
WO 2014159087A1 · 2014 [cited by applicant]
WO 2015023879A1 · 2015 [cited by applicant]
WO 2015143156A1 · 2015 [cited by applicant]
DATABASE Geneseq “Human 10Fn3 domain derived peptide li-38 SEQ: 174,” XP002765485, retrieved from EBI accession No. GSP:BBL29072 Database accession No. BBL29072 (Sep. 25, 2014) 1 page. [cited by applicant]
Extended European Search Report, European Application No. 20168319, dated Sep. 25, 2020, 4 pages. [cited by applicant]
International Preliminary Report on Patentability, PCT/US2016/053185, dated Mar. 27, 2018, 8 pages. [cited by applicant]
International Search Report and Written Opinion, PCT/US2016/053185, dated Feb. 13, 2017, 13 pages. [cited by applicant]
Lipovsek, D: “Adnectins: engineered target-binding protein therapeutics,” Protein Engineering, Design and Selection, Oxford Journal, London, GB, vol. 24(No. 1-2) Issue S11: 3-9 (2011). [cited by applicant]
Peters, C. et al., “Antibody-drug conjugates as novel anti-cancer chemotherapeutics,” Bioscience Reports, vol. 35 (4):e00225-e00225 (2015). [cited by applicant]
U.S. Appl. No. 16/751,788, filed Jan. 24, 2020, Dasa Lipovsek, U.S. Pat. No. 11,524,992. [cited by applicant]
U.S. Appl. No. 15/760,449, filed Mar. 15, 2018, Dasa Lipovsek, U.S. Pat. No. 10,584,160. [cited by applicant]