Compositions comprising circular polyribonucleotides and uses thereof
This invention relates generally to pharmaceutical compositions and preparations of circular polyribonucleotides and uses thereof.
1. A method of providing a subject with persistent in vivo expression of a polypeptide, comprising:
administering to the subject a circular polyribonucleotide that: (a) comprises an expression sequence encoding the polypeptide, (b) comprises an internal ribosome entry site (IRES) and a termination element, and (c) lacks a poly-A sequence, a free 3′ end, and an RNA polymerase recognition motif; and
translating a biologically effective amount of the polypeptide from the expression sequence of the circular polyribonucleotide in vivo in a cell of the subject over a period of at least 7 days.
2. The method of claim 1 , wherein the circular polyribonucleotide further comprises a stagger element at a 3′ end of the expression sequence.
3. The method of claim 2 , wherein the stagger element encodes a sequence with a C-terminal consensus sequence that is D(V/I)ExNPGP, where x=any amino acid.
4. The method of claim 1 , wherein the expression sequence encodes a secreted protein.
5. The method of claim 1 , wherein the expression sequence encodes an epigenetic modifying agent.
6. The method of claim 1 , wherein the circular polyribonucleotide further comprises at least one element selected from:
(a) an encryptogen;
(b) a regulatory element; and
(c) a quasi-double-stranded secondary structure.
7. The method of claim 1 , wherein the termination element comprises a stop codon.
8. The method of claim 1 , further comprising detecting expression of the expression sequence in the cell or a tissue of the subject before and/or after the administration.
9. The method of claim 1 , wherein the expression sequence encodes an enzyme.
10. The method of claim 1 , wherein expression sequence encodes a therapeutic protein.
11. The method of claim 1 , wherein the polypeptide is at least a portion of a viral envelope protein.
12. The method of claim 1 , wherein the polypeptide is an antigen.
13. The method of claim 12 , wherein the antigen is a viral antigen, a bacterial antigen, or a tumor antigen.
14. The method of claim 1 , wherein the expression sequence encodes an anti-microbial peptide.
15. The method of or claim 1 , wherein the circular polyribonucleotide is formulated with an exosome.
16. The method of claim 15 , wherein the circular polyribonucleotide further comprises a miRNA target sequence.
17. The method of claim 1 , wherein the circular polyribonucleotide is formulated with a lipid carrier.
18. The method of claim 17 , wherein the circular polyribonucleotide further comprises a miRNA target sequence.
19. The method of claim 1 , wherein the expression sequence encodes an epigenetic enzyme.
20. The method of claim 1 , wherein the expression sequence encodes a nuclease.
21. The method of claim 1 , wherein the expression sequence encodes a component of a CRISPR system.
22. The method of claim 1 , wherein the expression sequence encodes a pore forming peptide.
23. The method of claim 1 , wherein the expression sequence encodes a cytotoxic peptide.
24. The method of claim 1 , wherein the circular polyribonucleotide is formulated with a lipid nanoparticle.
25. The method of claim 1 , wherein the polypeptide is a nuclease and the circular polyribonucleotide further comprises a guide RNA sequence.
26. The method of claim 1 , further comprising detecting the biologically effective amount of the polypeptide in the subject over a time period of at least 7 days.
27. The method of claim 1 , further comprising detecting the biologically effective amount of the polypeptide in the subject over a time period of at least 14 days.
28. The method of claim 1 , further comprising detecting the biologically effective amount of the polypeptide in the subject over a time period of at least 21 days.
29. The method of claim 1 , wherein the polypeptide comprises at least 150 amino acids.
30. The method of claim 1 , wherein the polypeptide comprises at least 200 amino acids.
31. The method of any claim 1 , wherein the polypeptide comprises at least 250 amino acids.
32. The method of claim 1 , wherein the circular polyribonucleotide comprises at least 400 nucleotides.
33. The method of claim 1 , wherein the circular polyribonucleotide comprises at least 500 nucleotides.
34. The method of claim 1 , wherein the circular polyribonucleotide comprises at least about 1,000 nucleotides.
35. The method of claim 1 , wherein the circular polyribonucleotide further comprises two or more of the expression sequence encoding the polypeptide.
36. The method of claim 1 , wherein the circular polyribonucleotide further comprises a second expression sequence encoding a second polypeptide.