IP Library › Granted Patent US 10,953,033
Granted Patent B2
US 10,953,033 · App. 16/438,073 · Granted Mar 23, 2021

Compositions comprising circular polyribonucleotides and uses thereof

Inventors: Morag Helen Stewart (Boston, MA); Catherine Cifuentes-Rojas (Brookline, MA); Ki Young Paek (Worcester, MA); Avak Kahvejian (Lexington, MA); Nicholas McCartney Plugis (Cambridge, MA); Alexandra Sophie De Boer (Cambridge, MA); Erica Gabrielle Weinstein (Boston, MA); Sebastian Trousil (Boston, MA)
Assignee: FLAGSHIP PIONEERING INNOVATIONS VI, LLC
A61K31/7088C07K7/00C07K7/06C12N15/67C12P21/00
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Quick Facts
Patent No.
US 10,953,033
App. No.
16/438,073
Granted
Mar 23, 2021
Kind
B2
Abstract

This invention relates generally to pharmaceutical compositions and preparations of circular polyribonucleotides and uses thereof.

Claims (41)

1. A method of providing a subject with persistent in vivo expression of a polypeptide, comprising:

administering to the subject a circular polyribonucleotide that: (a) comprises an expression sequence encoding the polypeptide, (b) comprises an internal ribosome entry site (IRES) and a termination element, and (c) lacks a poly-A sequence, a free 3′ end, and an RNA polymerase recognition motif; and

translating a biologically effective amount of the polypeptide from the expression sequence of the circular polyribonucleotide in vivo in a cell of the subject over a period of at least 7 days.

2. The method of claim 1 , wherein the circular polyribonucleotide further comprises a stagger element at a 3′ end of the expression sequence.

3. The method of claim 2 , wherein the stagger element encodes a sequence with a C-terminal consensus sequence that is D(V/I)ExNPGP, where x=any amino acid.

4. The method of claim 1 , wherein the expression sequence encodes a secreted protein.

5. The method of claim 1 , wherein the expression sequence encodes an epigenetic modifying agent.

6. The method of claim 1 , wherein the circular polyribonucleotide further comprises at least one element selected from:

(a) an encryptogen;

(b) a regulatory element; and

(c) a quasi-double-stranded secondary structure.

7. The method of claim 1 , wherein the termination element comprises a stop codon.

8. The method of claim 1 , further comprising detecting expression of the expression sequence in the cell or a tissue of the subject before and/or after the administration.

9. The method of claim 1 , wherein the expression sequence encodes an enzyme.

10. The method of claim 1 , wherein expression sequence encodes a therapeutic protein.

11. The method of claim 1 , wherein the polypeptide is at least a portion of a viral envelope protein.

12. The method of claim 1 , wherein the polypeptide is an antigen.

13. The method of claim 12 , wherein the antigen is a viral antigen, a bacterial antigen, or a tumor antigen.

14. The method of claim 1 , wherein the expression sequence encodes an anti-microbial peptide.

15. The method of or claim 1 , wherein the circular polyribonucleotide is formulated with an exosome.

16. The method of claim 15 , wherein the circular polyribonucleotide further comprises a miRNA target sequence.

17. The method of claim 1 , wherein the circular polyribonucleotide is formulated with a lipid carrier.

18. The method of claim 17 , wherein the circular polyribonucleotide further comprises a miRNA target sequence.

19. The method of claim 1 , wherein the expression sequence encodes an epigenetic enzyme.

20. The method of claim 1 , wherein the expression sequence encodes a nuclease.

21. The method of claim 1 , wherein the expression sequence encodes a component of a CRISPR system.

22. The method of claim 1 , wherein the expression sequence encodes a pore forming peptide.

23. The method of claim 1 , wherein the expression sequence encodes a cytotoxic peptide.

24. The method of claim 1 , wherein the circular polyribonucleotide is formulated with a lipid nanoparticle.

25. The method of claim 1 , wherein the polypeptide is a nuclease and the circular polyribonucleotide further comprises a guide RNA sequence.

26. The method of claim 1 , further comprising detecting the biologically effective amount of the polypeptide in the subject over a time period of at least 7 days.

27. The method of claim 1 , further comprising detecting the biologically effective amount of the polypeptide in the subject over a time period of at least 14 days.

28. The method of claim 1 , further comprising detecting the biologically effective amount of the polypeptide in the subject over a time period of at least 21 days.

29. The method of claim 1 , wherein the polypeptide comprises at least 150 amino acids.

30. The method of claim 1 , wherein the polypeptide comprises at least 200 amino acids.

31. The method of any claim 1 , wherein the polypeptide comprises at least 250 amino acids.

32. The method of claim 1 , wherein the circular polyribonucleotide comprises at least 400 nucleotides.

33. The method of claim 1 , wherein the circular polyribonucleotide comprises at least 500 nucleotides.

34. The method of claim 1 , wherein the circular polyribonucleotide comprises at least about 1,000 nucleotides.

35. The method of claim 1 , wherein the circular polyribonucleotide further comprises two or more of the expression sequence encoding the polypeptide.

36. The method of claim 1 , wherein the circular polyribonucleotide further comprises a second expression sequence encoding a second polypeptide.

Assignments (4)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 8, 2021
From: KAHVEJIAN, AVAK; PLUGIS, NICHOLAS MCCARTNEY; DE BOER, ALEXANDRA SOPHIE; WEINSTEIN, ERICA GABRIELLE; TROUSIL, SEBASTIAN
To: FLAGSHIP PIONEERING, INC.
Reel/Frame 054852/0683 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 8, 2021
From: STEWART, MORAG HELEN; CIFUENTES-ROJAS, CATHERINE; PAEK, KI YOUNG
To: VL50, INC.
Reel/Frame 054852/0692 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 8, 2021
From: VL50, INC.
To: FLAGSHIP PIONEERING, INC.
Reel/Frame 054853/0467 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 8, 2021
From: FLAGSHIP PIONEERING, INC.
To: FLAGSHIP PIONEERING INNOVATIONS VI, LLC
Reel/Frame 054853/0490 →
Continuity (4)
Continuation PCTUS2018065836 · Dec 14, 2018
Provisional Application 62676688 · May 25, 2018
Provisional Application 62599547 · Dec 15, 2017
Related Publication 20190307785A1 · Oct 10, 2019
Cited By (5)
US 12,338,474 US 12,357,653 US 12,480,117 US 12,539,309 US 12,636,369