IP Library Granted Patent US 12,215,330
Granted Patent B2
US 12,215,330 · App. 18/145,611 · Granted Feb 4, 2025

Wheat with reduced lipoxygenase activity

Inventors: Ann Slade (Dallas, TX); Michelle Noval (Dallas, TX); Dayna Loeffler (Dallas, TX); Jessica Mullenberg (Dallas, TX); Aaron Holm (Dallas, TX)
Assignee: ARCADIA BIOSCIENCES, INC.
C12N15/8247A01H5/10A01H6/4678A23L7/10A23L7/198C12N9/0069C12N15/8243C12Y113/11C12Y113/11012A23V2002/00
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,215,330
App. No.
18/145,611
Granted
Feb 4, 2025
Kind
B2
Abstract

A series of independent human-induced non-transgenic mutations found at one or more of the Lpx genes of wheat; wheat plants having these mutations in one or more of their Lpx genes; and a method of creating and finding similar and/or additional mutations of Lpx by screening pooled and/or individual wheat plants. The wheat plants disclosed herein exhibit decreased lipoxygenase activity without having the inclusion of foreign nucleic acids in their genomes. Additionally, products produced from the wheat plants disclosed herein display increased oxidative stability and increased shelf life without having the inclusion of foreign nucleic acids in their genomes.

Claims (28)

1. A wheat flour comprising a human induced alteration in an Lpx1 gene in a D genome, wherein the wheat flour has a property selected from the group consisting of: (a) increased shelf-life; (b) increased oxidative stability; (c) decreased production of Lpx1 protein; (d) decreased lipoxygenase activity; (e) decreased hexanal production; (f) decreased pinellic acid production; (g) decreased decomposition products from fatty acids; and (h) improved sensory characteristics as compared to flour from a wild type wheat grain.

2. The wheat flour of claim 1 , wherein the Lpx1 gene is Lpx-D1.

3. The wheat flour of claim 2 , wherein the human-induced alteration in the Lpx-D1 gene is homozygous.

4. The wheat flour of claim 2 , wherein the human induced alteration in the Lpx-D1 gene is in a promoter.

5. The wheat flour of claim 2 , wherein the human induced alteration in the Lpx-D1 gene results in a premature stop codon.

6. The wheat flour of claim 2 , wherein the human induced alteration in the Lpx-D1 gene results in:

(i) a change from a tryptophan to a stop codon at amino acid position 81 (W81*), 101 (W101*), 494 (W494*), 517 (W517*), 591 (W591*), 635 (W635*), 665 (W665*), 666 (W666*), 701 (W701*), or 789 (W789*) of SEQ ID No. 3;

(ii) a change from a glutamine to a stop codon at amino acid position 190 (Q190*) of SEQ ID No. 3; or

(iii) a change from a guanine to adenine at nucleotide position 2386 (G2386A), or 2827 (G2827A) of SEQ ID No. 1; or a change from a guanine to adenine at nucleotide position 1538 (G1538A) of SEQ ID No. 15.

7. The wheat flour of claim 1 , further comprising a human induced alteration in a Lpx1 gene of a B genome.

8. The wheat flour plant of claim 7 , wherein the Lpx1 gene of the B genome is Lpx-B1.2.

9. The wheat flour of claim 8 , wherein the mutation in the B genome of the Lpx-B1.2 gene results in a change from a tryptophan to a stop codon at amino acid position 510 (W510*) of SEQ ID No. 6.

10. The wheat flour of claim 1 , wherein the flour is selected from the group consisting of: a whole grain flour, an ultrafine milled whole grain flour, a coarse fraction, a bran, a refined flour, and combinations thereof.

11. The wheat flour of claim 1 , wherein the flour has an increased shelf-life of at least 1 month as compared to flour from a wild type wheat grain.

12. The wheat flour of claim 1 , wherein the flour has at least a 5% reduction in hexanal production as compared to flour from a wild type wheat grain.

13. The wheat flour of claim 1 , wherein the flour has at least a 9% reduction of lipoxygenase activity as compared to flour from a wild type wheat grain.

14. The wheat flour of claim 11 , wherein the flour has at least a 60% reduction of lipoxygenase activity as compared to flour from a wild type wheat grain.

15. A wheat flour made from wheat grain comprising a human induced alteration in an Lpx1 gene in each of a B and a D genome, wherein the flour has a property selected from the group consisting of: (a) increased shelf-life; (b) increased oxidative stability; (c) decreased production of Lpx1 protein; (d) decreased lipoxygenase activity; (e) decreased hexanal production; (f) decreased pinellic acid production; (g) decreased decomposition products from fatty acids; and (h) improved sensory characteristics as compared to flour from a wild type wheat grain.

16. The wheat flour of claim 15 , wherein the Lpx1 gene in the D genome is Lpx-D1.

17. The wheat flour of claim 16 , wherein the human induced alteration in the Lpx-D1 gene results in a premature stop codon.

18. The wheat flour of claim 16 , wherein the human induced alteration in the Lpx-D1 gene results in:

(i) a change from a tryptophan to a stop codon at amino acid position 81 (W81*), 101 (W101*), 494 (W494*), 517 (W517*), 591 (W591*), 635 (W635*), 665 (W665*), 666 (W666*), 701 (W701*), or 789 (W789*) of SEQ ID No. 3;

(ii) a change from a glutamine to a stop codon at amino acid position 190 (Q190*) of SEQ ID No. 3; or

(iii) a change from a guanine to adenine at nucleotide position 2386 (G2386A), or 2827 (G2827A) of SEQ ID No. 1; or a change from a guanine to adenine at nucleotide position 1538 (G1538A) of SEQ ID No. 15.

19. The wheat flour of claim 15 , wherein the Lpx1 gene in the B genome is Lpx-B1.2.

20. The wheat flour of claim 15 , wherein the flour has an increased shelf-life of at least 1 month as compared to flour from a wild type wheat grain.

21. The wheat flour of claim 15 , wherein the flour has at least a 5% reduction in hexanal production as compared to flour from a wild type wheat grain.

22. The wheat flour of claim 15 , wherein the flour has at least a 9% reduction of lipoxygenase activity as compared to flour from a wild type wheat grain.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 28, 2025
From: ARCADIA BIOSCIENCES, INC.
To: BIOCERES CROP SOLUTIONS, CORP.
Reel/Frame 070668/0847 →
Continuity (6)
Continuation 16894187 · Jun 5, 2020
Continuation 16580975 · Sep 24, 2019
Continuation 15994062 · May 31, 2018
Continuation 15185579 · Jun 17, 2016
Provisional Application 62182299 · Jun 19, 2015
Related Publication 20230212598A1 · Jul 6, 2023
References Cited (125)
US 6660915B2 · Douma et al. · 2003 [cited by applicant]
US 6696294B1 · Konzak · 2004 [cited by applicant]
US 7897850B2 · Hirota et al. · 2011 [cited by applicant]
US 8952216B2 · Spangenberg · 2015 [cited by applicant]
US 10087455B2 · Slade · 2018 [cited by examiner]
US 10087456B2 · Meyer et al. · 2018 [cited by applicant]
US 10457951B2 · Slade · 2019 [cited by examiner]
US 10689659B2 · Slade · 2020 [cited by examiner]
US 11560572B2 · Slade · 2023 [cited by examiner]
US 20030167544A1 · Douma et al. · 2003 [cited by applicant]
US 20070044171A1 · Kovalic et al. · 2007 [cited by applicant]
US 20070292583A1 · Haynes · 2007 [cited by examiner]
US 20090238935A1 · Haynes et al. · 2009 [cited by applicant]
US 20110214199A1 · Coffin · 2011 [cited by applicant]
US 20130276169A1 · Poraty et al. · 2013 [cited by applicant]
US 20140099421A1 · Zhao · 2014 [cited by examiner]
US 20140106052A1 · Hawley · 2014 [cited by applicant]
US 20140130203A1 · La Rosa et al. · 2014 [cited by applicant]
US 20150004301A1 · Arndt et al. · 2015 [cited by applicant]
CN 102925576A · 2012 [cited by applicant]
WO 02096190A2 · 2002 [cited by applicant]
WO 2007149320A1 · 2007 [cited by applicant]
WO 2016205644A2 · 2016 [cited by applicant]
Office Action for Brazil Patent Application No. BR1120170275015 and translation dated Oct. 5, 2023. [cited by applicant]
Hearing Notice for India Patent Application No. 201837000818 dated Dec. 4, 2023. [cited by applicant]
Office Action for Japanese Patent Application No. 2022-042174 and translation dated Apr. 20, 2023. [cited by applicant]
Office Action for European Patent Application No. 16812520.1 (Mar. 13, 2023). [cited by applicant]
Butt, M.S., Nasir, M. and Akhtar, S., Sharifik. 2004. Int. J. Food Safety, 4, pp. 1-4. [cited by applicant]
Carrera et al, Journal of Cereal Science 45:67-77, 2007. [cited by applicant]
Cato, L., Halmos, A.L. and Small, D.M., 2006. Journal of the Science of Food and Agriculture, 86(11), pp. 1670-1678. [cited by applicant]
De Simone, V., 2010. Journal of Cereal Science, 52(2), pp. 121-128. [cited by applicant]
Doblado-Maldonado et al, Journal of Cereal Science 56:119-126, 2012. [cited by applicant]
Doblado Maldonado et al, Food Chemistry 140:204-209, 2013. [cited by applicant]
Doblado-Maldonado, A.F., 2012. Thesis University of Nebraska-Lincoln. [cited by applicant]
Dong, Z., 2015. Molecular breeding, 35(7), p. 150. [cited by applicant]
Feng et al, Journal of Cereal Science 52:387-394, 2010. [cited by applicant]
Feng et al, Molecular Breeding 30:113-124, 2012. [cited by applicant]
Fritsch et al., JAOCS 54:225, 1977. [cited by applicant]
Galliard, Journal of Cereal Science 4:179-192, 1986. [cited by applicant]
Galliard, T., 1986. Journal of Cereal Science, 4(1), pp. 33-50. [cited by applicant]
Galliard, T., 1983. Rancidity in foods/edited by JC Allen and RJ Hamilton. [cited by applicant]
Garbus et al, Journal of Cereal Science 50:67-73, 2009. [cited by applicant]
Garbus et al, Journal of Cereal Science 58:298-304, 2013. [cited by applicant]
Geng et al, Molecular Breeding 28:117-126, 2011. [cited by applicant]
Geng, H., 2012. Crop Science, 52(2), pp. 568-576. [cited by applicant]
Goesaert, H., 2005. Trends in food science & technology, 16(1), pp. 12-30. [cited by applicant]
Goutam, U., 2013. Australian Journal of Crop Science, 7(4), p. 469. [cited by applicant]
Guo, G., et al., 2014. Theoretical and applied genetics, 127(10), pp. 2095-2103. [cited by applicant]
Hamilton-Kemp, T.R., et al., 1987. Phytochemistry, 26(5), pp. 1273-1277. [cited by applicant]
Hessler, T.G., et al., 2002. Crop Science, 42(5), pp. 1695-1700. [cited by applicant]
Hidalgo, A. and Brandolini, A., 2012. Food chemistry, 131(4), pp. 1499-1503. [cited by applicant]
Leenhardt, F., et al., 2006. European Journal of Agronomy, 25(2), pp. 170-176. [cited by applicant]
Leenhardt, F., et al., 2006. Journal of Agricultural and Food Chemistry, 54(5), pp. 1710-1715. [cited by applicant]
Loiseau, J., et al., 2001. Seed Science Research, 11(3), pp. 199-211. [cited by applicant]
Manna, F., et al., 1998. Cereal Research Communications, pp. 23-30. [cited by applicant]
Marathe, S.A., et al., 2002. International journal of food science & technology, 37(2), pp. 163-168. [cited by applicant]
Narvel et al., American Society of Agronomy 38:926-928, 1998. [cited by applicant]
Nicolas, J., et al., 1982. Journal of the Science of Food and Agriculture, 33(4), pp. 365-372. [cited by applicant]
Pico, J., et al., 2015. Food Research International, 75, pp. 200-215. [cited by applicant]
Sharma, S., et al., 2014. Storage stability and quality assessment of processed cereal brans. Journal of food science and technology, 51(3), pp. 583-588. [cited by applicant]
Shiiba, K., Negishi, Y., Okada, K. and Nagao, S., 1991. Cereal Chem, 68(2), pp. 115-122. [cited by applicant]
Shirasawa, K., et al., 2008. Breeding science, 58(2), pp. 169-176. [cited by applicant]
Surrey Plant Physiology 39: 65-70, (1964). [cited by applicant]
Suzuki, Y., et al., 1999. Journal of agricultural and food chemistry, 47(3), pp. 1119-1124. [cited by applicant]
Umate, Plant Signaling & Behavior 6:335-338, 2011. [cited by applicant]
Verlotta et al., BMC Plant Biology 10:263, 2010. [cited by applicant]
Wallace, J.M. and Wheeler, E.L., 1972. America Associate of Cereal chemists, pp. 92-98. [cited by applicant]
Wang, et al., Food Rev. Int., 15(2), 215-234 (1999). [cited by applicant]
Warwick, M., et al., J. Sci. Food Agric., 1979, 30, 1131-1138. [cited by applicant]
Warwick, M., et al., J. Sci. Food Agric., 1980, 31, 316-318. [cited by applicant]
Wu, P., et al., Scientia Agricultura Sinica, 2015, 48(2): 2017-214. [cited by applicant]
Report Demanding Clarifications Previous to Substantive Examination for Argentina Application No. 20160101837 and translation (Jun. 9, 2020). [cited by applicant]
Office Action in Japanese Patent Application No. 2017-565827 and translation (Mar. 8, 2021). [cited by applicant]
Office Action for Canadian Application No. 2989324 (dated Jul. 13, 2022). [cited by applicant]
Examination Report for European Application No. 16812520.1 (Jan. 31, 2022). [cited by applicant]
Office action for JP 2017565827 and translation (mailed on Nov. 17, 2021). [cited by applicant]
Office Action for CN2006800468485 and translation (dated Jul. 2, 2021). [cited by applicant]
Office Action for MXa2017016652 and translation (dated Jul. 6, 2021). [cited by applicant]
Examination Report for India Patent Application 201837000818 and translation (May 24, 2021). [cited by applicant]
Li et al, “Pathway for Lipid A Biosynthesis in [cited by applicant]
Office Action for U.S. Appl. No. 15/185,579, filed Dec. 7, 2017. [cited by applicant]
International Preliminary Report on Patentability of International Application No. PCT/US2016/038071, mailed Dec. 19, 2017, 11 pages. [cited by applicant]
NCBI, GenBack accession No. AHG59317.01 (Apr. 1, 2014). [cited by applicant]
International Search Report and Written Opinion of International Application No. PCT/US17/37859, mailed Nov. 3, 2017. [cited by applicant]
Office Action for U.S. Appl. No. 15/994,062, filed May 1, 2019. [cited by applicant]
Office Action for U.S. Appl. No. 15/994,062, filed Jan. 2, 2019. [cited by applicant]
Office Action for U.S. Appl. No. 16/580,975, filed Nov. 4, 2019. [cited by applicant]
Examination Report for for Australian Patent Application No. 2016280266 (Sep. 6, 2019). [cited by applicant]
Extended European Search Report for European Patent Application No. 16812520.1 (Nov. 29, 2018). [cited by applicant]
Bakke et al., “Effects of Bitterness, Roughness, PROP Taster Status, and Fungiform Papillae Density on Bread Acceptance,” Food Quality and Preference 22(4): 317-325 (2011). [cited by applicant]
I3NM23_WHEAT, https://www.uniprot.org/uniprot/I3NM23.txt (Sep. 5, 2012). [cited by applicant]
E5F115_TRITD, https://www.uniprot.org/uniprot/E5F115.txt (Feb. 8, 2011). [cited by applicant]
Office Action for European Patent Application No. 16812520.1 (Mar. 16, 2021). [cited by applicant]
Office Action for Japanese Patent Application No. 2017-565827 and translation (Jun. 1, 2020). [cited by applicant]
Search Report and Written Opinion for Brazilian Patent Application No. 112017027501-5 and translation (Jan. 29, 2020). [cited by applicant]
Bakke, “Effects of bitterness, roughness, PROP Taster Status, and Fungiform Papillae Density on Bread Acceptance,” Thesis (2010). [cited by applicant]
Chedea et al., “Lipoxygenase and Carotenoids: A Co-Oxidation Story, ” African Journal of Biotechnology 12(20):2786-2791 (2013). [cited by applicant]
Rackis et al., “Flavor Problems of Vegetable Food Proteins,” Journal of the American Oil Chemists' Society 56(3):262-271 (1979). [cited by applicant]
Iassonova et al., “Evidence of an Enzymatic Source of off Flavors in “Lipoxygenase-Null” Soybeans,” Journal of the American Oil Chemists' Society 86(1):59-64 (2009). [cited by applicant]
Office Action in Chinese Patent Application No. 201780046848.5 and translation (Jan. 7, 2020). [cited by applicant]
Office Action in Chinese Patent Application No. 201780046848.5 and translation (Feb. 20, 2021). [cited by applicant]
Xu, B., et al., 2012. Quality Assurance and Safety of Crops & Foods, 4(1), pp. 26-32. [cited by applicant]
Xu, B., et al. 2013. Journal of Food Engineering, 117(1), pp. 1-7. [cited by applicant]
Zhang, et al, J. of Stored Products Research 43:87-91, 2007. [cited by applicant]
Zhang, W., et al., Theoretical and Applied Genetics, 117(8), pp. 1361-1377 (2008). [cited by applicant]
Zhang, Y.Y., et al., Journal of Triticeae Crops, 4, p. 005 (2012). [cited by applicant]
G. Jakab et al., Plant Physiology, Aug. 2003, vol. 132, No. 4, pp. 2230-2239. [cited by applicant]
Carrera et al, Journal of Cereal Science, 2007 vol. 45, pp. 67-77 (Year: 2007). [cited by applicant]
Garbus et al, Journal of Cereal Science, Sep. 2013, pp. 1-7 (Year: 2013). [cited by applicant]
Leenhardt et al, J. Agric. Food Chem, 2006, vol. 54, pp. 1710-1715 (Year: 2006). [cited by applicant]
GenBank ADR71857.1, Dec. 9, 2010 (Year: 2010). [cited by applicant]
GenBank ADP02185.1, Sep. 7, 2012 (Year: 2012). [cited by applicant]
Wang et al, Nature Biotechnology, Sep. 2014, vol. 32, No. 9, pp. 947-952 (Year: 2014}. [cited by applicant]
GenBank KC679301.1, Apr. 1, 2014 (Year: 2014). [cited by applicant]
GenBank KC679302.1, Apr. 1, 2014 (Year: 2014). [cited by applicant]
Kikkawa et al, Journal of Forensic Sciences, Sep. 2015, vol. 60, No. 5, pp. 1316-1321 (Year: 2015). [cited by applicant]
Sonke et al., Sigma-Aldrich, Jul. 14, 2013, Product No. E5038 (Year: 2013). [cited by applicant]
International Search Report and Written Opinion of Intl. Appln. No. PCT/US2016/038071, mailed Jan. 4, 2017, 17 pages. [cited by applicant]
Almeida et al., Cereal Chemistry 91(4):321-326, 2014. [cited by applicant]
Anthon and Barrett, Journal of Agricultural Food Chemistry 49: 32-37, 2001. [cited by applicant]
Barone, R., Journal of agricultural and food chemistry, 47(5), pp. 1924-1931, 1999. [cited by applicant]
Borrelli, G.M., CIHEAM-Options Mediterraneennes, pp. 497-500, 2000. [cited by applicant]
Borelli, Cereal Chem, 76(3), pp. 335-340, 1999. [cited by applicant]
Office Action for European Patent Application No. 16 812 520.1 dated Jan. 31, 2024. [cited by applicant]
Office Action for Brazil Patent Application No. BR1120170275015 and translation dated Apr. 1, 2024. [cited by applicant]