IP Library › Granted Patent US 12,421,228
Granted Patent B2
US 12,421,228 · App. 17/605,094 · Granted Sep 23, 2025

Naphthyridine derivatives as PRC2 inhibitors

Inventors: John Michael Ketcham (San Diego, CA); Aaron Craig Burns (San Diego, CA); Matthew Arnold Marx (San Diego, CA)
Assignee: MIRATI THERAPEUTICS, INC.
C07D471/04A61P35/00
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Quick Facts
Patent No.
US 12,421,228
App. No.
17/605,094
Granted
Sep 23, 2025
Kind
B2
Abstract

Disclosed are compounds of formula (I) or (II) that inhibit Polycomb Repressive Complex 2 (PRC2) activity. In particular, the present invention relates to compounds, pharmaceutical compositions and methods of use, such as methods of treating cancer using the compounds and pharmaceutical compositions of the present invention.

Claims (57)

1. A compound of Formula (II):

or a pharmaceutically acceptable salt thereof,

wherein:

represents a single or a double bond;

A 1 , A 2 , A 3 and A 4 are each independently N or CR A , wherein no more than two of A 1 , A 2 , A 3 , and A 4 are N, and wherein at least one of A 2 , A 3 and A 4 is N;

Z is O or S;

X is O, CR 5 , CR 5 OH, or C(R 5 ) 2 , wherein:

when X is O, is a single bond;

when X is C(R 5 ) 2 , is a single bond;

when X is CR 5 OH, is a single bond; or

when X is CR 5 , is a double bond;

R 1 is aryl, heteroaryl, -L-cycloalkyl, —N(R 5 )heterocyclyl, or -L-heterocyclyl, wherein the aryl, the heteroaryl and the cyclyl portion of the -L-cycloalkyl, —N(R 5 )heterocyclyl, and -L-heterocyclyl are optionally substituted with one or more independently selected R 3 ;

R 2 is independently C1-C3 alkyl or halogen;

each R 3 is independently oxo, cyano, halogen, hydroxyl, —PO 3 (C1-C3 alkyl) 2 , alkoxy, hydroxyalkyl, heteroalkyl, aralkyl, haloalkyl, —COOR 5 , —Y 2 -haloalkyl, —Y 1 —C1-C6 alkyl, —Y 2 -C1-C6 alkyl, -L-cycloalkyl, -L-heteroaryl, -L-heterocyclyl, —Y 1 -heterocyclyl, —Y 2 -heterocyclyl, -L-N(R 5 ) 2 , —O-L-N(R 5 ) 2 , —C(CF 3 )N(R 5 ) 2 , —Y 1 —N(R 5 ) 2 , or —Y 2 —N(R 5 ) 2 wherein the ring portion of the aralkyl, -L-cycloalkyl, -L-heteroaryl, -L-heterocyclyl, and —Y 1 -heterocyclyl is optionally substituted with one or more independently selected R 6 ;

R 4 is hydrogen, C1-C3 alkyl, halogen, haloalkyl, hydroxyalkyl, or heteroalkyl;

L is a bond or C1-C4 alkylene;

Y 1 is a bond, —C(O)—, or —NHC(O)—;

Y 2 is a bond, —S—, —SO—, —SO 2 —, or —NR 5 SO 2 —,

each R 5 is independently hydrogen or C1-C3 alkyl;

each R 6 is oxo, cyano, hydroxyl, alkoxy, halogen, haloalkyl, hydroxyalkyl, heteroalkyl, cycloalkyl, -L-N(R 5 ) 2 , C1-C6 alkyl, or —Y 1 -heterocyclyl, wherein —Y 1 -heterocyclyl is optionally substituted with one or more R 7 ;

each R 7 is independently hydrogen, C1-C3 alkyl, halogen, haloalkyl, hydroxyalkyl, or heteroalkyl;

each R A is independently hydrogen, alkoxy, heteroalkyl, —N(R 5 ) 2 , heteroalkylN(R 5 ) 2 , C1-C3 alkyl, S—C1-C3 alkyl, or aryl; and

n is 1 or 2.

2. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 3 is N.

3. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 1 and A 3 are each N.

4. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 2 is CR A and R A is alkoxy.

5. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 4 is CR A and R A is alkoxy.

6. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 2 is N.

7. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 2 and A 4 are each N.

8. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 3 is CR A and R A is alkoxy, heteroalkyl, —N(R 5 ) 2 , heteroalkylN(R 5 ) 2 , C1-C3 alkyl, S—C1-C3 alkyl, or aryl.

9. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 2 and A 3 are each N.

10. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 4 is N.

11. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A 3 is N, A 4 is CR A and R A is alkoxy, —N(R 5 ) 2 , or aryl.

12. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein Z is O.

13. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein n is 1.

14. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 2 is halogen.

15. The compound of claim 14 , or a pharmaceutically acceptable salt thereof, wherein R 2 is fluorine.

16. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein X is C(R 5 ) 2 and is a single bond.

17. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 1 is aryl optionally substituted with one or more independently selected R 3 .

18. The compound of claim 17 , or a pharmaceutically acceptable salt thereof, wherein R 1 is phenyl optionally substituted with one or more independently selected R 3 .

19. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein R 1 is phenyl substituted with one, two or three R 3 .

20. The compound of claim 19 , or a pharmaceutically acceptable salt thereof, wherein the one, two or three R 3 are each independently halogen, hydroxyl, haloalkyl, —COOR 5 , —Y 1 —C1-C6 alkyl, —Y 2 —C1-C6 alkyl, -L-N(R 5 ) 2 , —O-L-N(R 5 ) 2 , —C(CF 3 )N(R 5 ) 2 , —Y 1 —N(R 5 ) 2 , —Y 2 —N(R 5 ) 2 , —Y 2 -haloalkyl, -L-heterocyclyl, or —Y 1 -heterocyclyl, wherein the heterocyclyl portion of the -L-heterocyclyl and —Y 1 -heterocyclyl is optionally substituted with one or more independently selected R 6 .

21. The compound according claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 1 is heteroaryl optionally substituted with one or more independently selected R 3 .

22. The compound of claim 21 , or a pharmaceutically acceptable salt thereof, wherein R 1 is heteroaryl selected from pyrazolyl, imidazolyl, oxazolyl, isoxazolyl, thiazolyl, triazinyl, pyridyl, pyridinyl-2-one, pyrazinyl, pyridazinyl, pyrimidinyl, isoxazolyl, isoindolinyl, naphthridinyl, 1,2,3,4-tetrahydroisoquinolinyl, and 5,6-dihydro-4H-pyrrolo[1,2-b]pyrazolyl, each optionally substituted with one or more independently selected R 3 .

23. The compound of claim 22 , or a pharmaceutically acceptable salt thereof, wherein R 1 is substituted with one or more R 3 ; wherein each R 3 is independently cyano, halogen, —Y 1 -C1-C6 alkyl, —Y 2 -C1-C6 alkyl, alkoxy, hydroxyalkyl, heteroalkyl, haloalkyl, -L-cycloalkyl, -L-N(R 5 ) 2 , —Y 1 —N(R 5 ) 2 , -L-heteroaryl, -L-heterocyclyl, or —Y 1 -heterocyclyl, wherein the heteroaryl of the-L-heteroaryl and the heterocyclyl portion of the -L-heterocyclyl and —Y 1 -heterocyclyl are optionally substituted with one or more independently selected R 6 .

24. A compound selected from the group consisting of:

or a pharmaceutically acceptable salt thereof.

25. A pharmaceutical composition comprising a therapeutically effective amount of a compound according to claim 1 , or a pharmaceutically acceptable salt, and a pharmaceutically acceptable excipient.

26. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein:

Z is O;

n is 1;

R 2 is fluorine;

X is C(R 5 ) 2 and is a single bond; and

R 5 is hydrogen.

27. The compound of claim 26 , or a pharmaceutically acceptable salt thereof, wherein R 1 is phenyl substituted with one or more independently selected R 3 .

28. The compound of claim 26 , or a pharmaceutically acceptable salt thereof, wherein R 1 is heteroaryl substituted with one or more independently selected R 3 .

29. The compound of claim 28 , or a pharmaceutically acceptable salt thereof, wherein R 1 is pyrazolyl or pyridyl, substituted with one or more independently selected R 3 .

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 20, 2021
From: KETCHAM, JOHN MICHAEL; BURNS, AARON CRAIG; MARX, MATTHEW ARNOLD
To: MIRATI THERAPEUTICS, INC.
Reel/Frame 057855/0568 →
Continuity (2)
Provisional Application 62836840 · Apr 22, 2019
Related Publication 20220213097A1 · Jul 7, 2022
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