IP Library › Granted Patent US 12,577,259
Granted Patent B2
US 12,577,259 · App. 17/757,622 · Granted Mar 17, 2026

PCSK9 antagonist compounds

Inventors: Hubert Josien (Jersey City, NJ); Jian Liu (Edison, NJ); Thomas Joseph Tucker (North Wales, PA); Abbas M. Walji (Lansdale, PA); Harold B. Wood (Westfield, NJ)
Assignee: MERCK SHARP & DOHME LLC
C07D498/22C07K7/64
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Quick Facts
Patent No.
US 12,577,259
App. No.
17/757,622
Granted
Mar 17, 2026
Kind
B2
Abstract

Disclosed are compounds of Formula (I), or a pharmaceutically acceptable salt thereof: (I) wherein A, A 1 , A 2 , R 1 , R 2 and R 3 are as defined herein, which compounds have properties for antagonizing PCSK9. Also described are pharmaceutical formulations comprising the compounds of Formula I or their salts, and methods of treating cardiovascular disease and conditions related to PCSK9 activity, e.g. atherosclerosis, hypercholesterolemia, coronary heart disease, metabolic syndrome, acute coronary syndrome, or related cardiovascular disease and cardiometabolic conditions.

Claims (211)

1 . A compound of Formula I

wherein:

A is C 2-6 alkyl;

A 1 is

A 2 is —(CR 2 ) n X(CR 2 ) n —;

X is O or CR 2 ;

R is independently selected from H or C 1-6 alkyl;

R a is independently selected from H or —C(O)OR 9 ;

R b is independently selected from H, C 1-6 alkyl, or C 1-6 alkyl-N + (CH 3 ) 2 ;

R d is independently selected from H or —C(O)OR 9 ;

R x is triazolyl;

R 1 is H;

R 2 is selected from

—(CR 2 ) z —NR b —C(O)R 10 ;

R 3 is F;

R 4 is

R 5 is independently selected from —(CR a 2 ) x —, —(CR a 2 ) x O(CR a 2 ) x —, and C 1-8 alkyl;

R 6 is independently selected from —(CR a 2 ) x NRC(O)—, —(CR 2 ) x NRS(O) 2 —, and —(CR a 2 ) n O(CR a 2 ) q NRC(O)—;

R 9 is independently selected from H or C 1-6 alkyl;

R 10 is independently selected from:

a) —(R 5 —N + (CH 3 ) 2 —R 6 ) u —(R 20 ) n —(R 6 ) m —R 12 ,

b) —(R 20 ) n —(R 6 ) m —R 5 —N + (CH 3 ) 2 —R 6 —R 12 ,

c) —(R 20 ) n —R 5 —N + (CH 3 ) 2 —(R 20 ) s —(R 6 ) q —R 12 ,

d) —R 6 —R 20 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 12 ,

e) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —(R 20 ) n —(R 6 ) q —R 12 ,

f) —(R 20 ) n —(R 6 ) m —R 12 ,

g) —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 5 —[NRC(O)—R 5 ] q ,

h) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —R 5 ,

i) —R 5 —N + (CH 3 ) 2 —(R 20 ) n (R 6 ) m —R 5 ,

j) —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 12 ,

k) —(R 20 ) n —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 ,

l) —R 6 —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 ,

m) —(R 20 ) n —N + (CH 3 ) 2 —(R 6 ) q —R 12 ,

n) —(R 20 ) n —(R 6 ) m —R 20 —N + (CH 3 ) 2 —(R 20 ) s —(R 6 ) q —R 12 ,

o) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —R 4 ,

p) —(R 20 ) n —N + (CH 3 ) 2 —(R 6 ) q —(R 20 ) n —(R 6 ) m —R 12 ,

q) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —(R 20 ) n —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 ,

r) —R 5 —N + (CH 3 ) 2 —(R 6 ) m —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 , and

s) —CR b 2 —(R 20 ) n —(R 6 ) m —R 12 ;

R 12 is independently selected from —C 11-20 alkyl-R d , —(CR 2 ) x —O—(CR 2 ) x —R d , —C 11-20 alkyl-C(O)NR—(CR d 2 ) 2 H, and C 2-16 alkenyl;

R 20 is independently selected from

a) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —,

b) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —NRC(O)—,

c) —(CR a 2 ) t O(CR a 2 ) q —NRC(O)—(CR a 2 ) n O(CR a 2 ) n O—,

d) —(CR a 2 ) t —NRC(O)—(CR a 2 ) q O(CR a 2 ) q O—(CR a 2 ) t —,

e) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —, and

f) —(CR a 2 ) t —O—(CR a 2 ) q O(CR a 2 ) q O—(CR a 2 ) t —;

m is independently selected from 0, 1, 2, 3 or 4;

n is independently selected from 1, 2 or 3;

q is independently selected from 1, 2, 3 or 4;

r is independently selected from 0, 1, 2, 3 or 4;

s is independently selected from 0, 1, 2 or 3;

t is independently selected from 0, 1, 2 or 3;

u is 1 or 2;

x is independently selected from 1, 2, 3, 4, 5, 6, 7, or 8;

z is independently selected from 1, 2, 3, 4, 5 or 6;

or a pharmaceutically acceptable salt of any thereof.

2 . A compound of Formula I:

wherein:

A is selected from C 2-6 alkyl or —(CR 2 ) n R x (CR 2 ) n —;

A 1 is

A 2 is —(CR 2 ) n X(CR 2 ) n ;

X is O or CR 2 ;

R is independently selected from H or C 1-6 alkyl;

Ra is independently selected from H or —C(O)OR 9 ;

R 6 is independently selected from H, C 1-6 alkyl, or C 1-6 alkyl-N + (CH 3 ) 2 ;

R x is triazolyl;

R d is independently selected from H or —C(O)OR 9 ;

R 1 is H;

R 2 is selected from:

(a) —(CR 2 ) z —NR b —C(O)R 10 , and

(b) —(CR 2 ) z —NR—C(O)—(CR 2 ) z [O(CR 2 ) n ] r —N + (CH 3 ) 3 ;

R 3 is F;

R 4 is

R 5 is independently selected from —(CR a 2 ) x —, —(CR a 2 ) x O(CR a 2 ) x —, and C 1-8 alkyl;

R 6 is independently selected from —(CR a 2 ) x NRC(O)—, —(CR 2 ) x NRS(O) 2 —, and —(CR a 2 ) n O(CR a 2 ) q NRC(O)—;

R 9 is independently selected from H or C 1-6 alkyl;

R 10 is independently selected from:

a) —(R 5 —N + (CH 3 ) 2 —R 6 ) u —(R 20 ) n —(R 6 ) m —R 12 ,

b) —(R 20 ) n —(R 6 ) m —R 5 —N + (CH 3 ) 2 —R 6 —R 12 ,

c) —(R 20 ) n — R 5 —N + (CH 3 ) 2 —(R 20 ), —(R 6 ) q —R 12 ,

d) —R 6 —R 20 —N + (CH 3 ) 2 —(R 20 ) n (R 6 ) m —R 12 ,

e) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —(R 20 ) n —(R 6 ) q —R 12 ,

f) —(R 20 ) n —(R 6 ) m —R 12 ,

g) —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 5 —[NRC(O)—R 5 ] q ,

h) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —R 5 ,

i) —R 5 —N + (CH 3 ) 2 —(R 20 ) n (R 6 ) m —R 5 ,

j) —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 12 ,

k) —(R 20 ) n —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 ,

l) —R 6 —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 ,

m) —(R 20 ) n —N + (CH 3 ) 2 —(R 6 ) q —R 12 ,

n) —(R 20 ) n —(R 6 ) m —R 20 —N + (CH 3 ) 2 —(R 20 ), (R 6 ) q —R 12 ,

o) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —R 4 ,

p) —(R 20 ) n —N + (CH 3 ) 2 —(R 6 ) q —(R 20 ) n —(R 6 ) m —R 12 ,

q) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —(R 20 ) n —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 ,

r) —R 5 —N + (CH 3 ) 2 —(R 6 ) m —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 , and

s) —CR b 2 —(R 20 ) n (R 6 ) m —R 12 ;

R 12 is independently selected from —C 11-20 alkyl-R d , —(CR 2 ) x —O—(CR 2 ) x —R d , —C 11-20 alkyl-C(O)NR—(CR d 2 ) 2 H, and C 2-16 alkenyl;

R 20 is independently selected from

a) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —,

b) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —NRC(O)—,

c) —(CR a 2 ) t O(CR a 2 ) q —NRC(O)—(CR a 2 ) n O(CR a 2 ) n O—,

d) —(CR a 2 ) t —NRC(O)—(CR a 2 ) q O(CR a 2 ) q O—(CR a 2 ) t —,

e) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —, and

f) —(CR a 2 ) t —O—(CR a 2 ) q O(CR a 2 ) q O—(CR a 2 ) t —;

m is independently selected from 0, 1, 2, 3 or 4;

n is independently selected from 1, 2 or 3;

q is independently selected from 1, 2, 3 or 4;

r is independently selected from 0, 1, 2, 3 or 4;

s is independently selected from 0, 1, 2 or 3;

t is independently selected from 0, 1, 2 or 3;

u is 1 or 2;

x is independently selected from 1, 2, 3, 4, 5, 6, 7, or 8;

z is independently selected from 1, 2, 3, 4, 5 or 6;

or a pharmaceutically acceptable salt of any thereof.

3 . A compound of Formula I:

wherein:

A is C 2-6 alkyl;

A 1 is

A 2 is —(CR 2 ) n NRC(O)(CR 2 ) n —;

R is independently selected from H or C 1-6 alkyl;

R a is independently selected from H or —C(O)OR 9 ;

R b is independently selected from H, C 1-6 alkyl, or C 1-6 alkyl-N + (CH 3 ) 2 ;

R x is triazolyl;

R d is independently selected from H or —C(O)OR 9 ;

R 1 is selected from:

(a) —(CR 2 ) z —R x —(CR 2 ) z NR 2 ,

(b) —(CR 2 ) z —R x —(CR 2 ) z NR—C(O)—(CR 2 ) z [O(CR 2 ) n ] r —N + (CH 3 ) 3 , and

(c) —(CR 2 ) z —R x —(CR 2 ) z —NR b —C(O)R 10 ;

R 2 is selected from:

(a) —(CR 2 ) z —NR b —C(O)R 10 , and

(b) —(CR 2 ) z —NR—C(O)—(CR 2 ) z [O(CR 2 ) n ] r —N + (CH 3 ) 3 ;

R 3 is F;

R 4 is

R 5 is independently selected from —(CR a 2 ) x —, —(CR a 2 ) x O(CR a 2 ) x —, and C 1-8 alkyl;

R 6 is independently selected from —(CR a 2 ) x NRC(O)—, —(CR 2 ) x NRS(O) 2 —, and —(CR a 2 ) n O(CR a 2 ) q NRC(O)—;

R 9 is independently selected from H or C 1-6 alkyl;

R 10 is independently selected from:

a) —(R 5 —N + (CH 3 ) 2 —R 6 ) u —(R 20 ) n —(R 6 ) m —R 12 ,

b) —(R 20 ) n —(R 6 ) m —R 5 —N + (CH 3 ) 2 —R 6 —R 12 ,

c) —(R 20 ) n —R 5 —N + (CH 3 ) 2 —(R 20 ) s —(R 6 ) q —R 12

d) —R 6 —R 20 —N + (CH 3 ) 2 —(R 20 ) n (R 6 ) m —R 12 ,

e) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —(R 20 ) n —(R 6 ) q —R 12 ,

f) —(R 20 ) n —(R 6 ) m —R 12 ,

g) —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 5 —[NRC(O)—R 5 ] q ,

h) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —R 5 ,

i) —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 5 ,

j) —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) m —R 12 ,

k) —(R 20 ) n —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12

l) —R 6 —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12

m) —(R 20 ) n —N + (CH 3 ) 2 —(R 6 ) q —R 12 ,

n) —(R 20 ) n —(R 6 ) m —R 20 —N + (CH 3 ) 2 —(R 20 ) s —(R 6 ) q —R 12

o) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —R 4 ,

p) —(R 20 ) n —N + (CH 3 ) 2 —(R 6 ) q —(R 20 ) n (R 6 ) m —R 12 ,

q) —R 20 —N + (CH 3 ) 2 —(R 6 ) m —(R 20 ) n —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 ,

r) —R 5 —N + (CH 3 ) 2 —(R 6 ) m —R 5 —N + (CH 3 ) 2 —(R 20 ) n —(R 6 ) q —R 12 , and

s) —CR b 2 —(R 20 ) n (R 6 ) m —R 12 ;

R 12 is independently selected from —C 11-20 alkyl-R d , —(CR 2 ) x —O—(CR 2 ) x —R d , —C 11-20 alkyl-C(O)NR—(CR d 2 ) 2 H, and C 2-16 alkenyl;

R 20 is independently selected from

a) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —,

b) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —NRC(O)—,

c) —(CR a 2 ) t O(CR a 2 ) q —NRC(O)—(CR a 2 ) n O(CR a 2 ) n O—,

d) —(CR a 2 ) t —NRC(O)—(CR a 2 ) q O(CR a 2 ) q O—(CR a 2 ) t —,

e) —(CR a 2 ) t O(CR a 2 ) q O—(CR a 2 ) t —, and

f) —(CR a 2 ) t —O—(CR a 2 ) q O(CR a 2 ) q O—(CR a 2 ) t —;

m is independently selected from 0, 1, 2, 3 or 4;

n is independently selected from 1, 2 or 3;

q is independently selected from 1, 2, 3 or 4;

r is independently selected from 0, 1, 2, 3 or 4;

s is independently selected from 0, 1, 2 or 3;

t is independently selected from 0, 1, 2 or 3;

u is 1 or 2;

x is independently selected from 1, 2, 3, 4, 5, 6, 7, or 8;

z is independently selected from 1, 2, 3, 4, 5 or 6;

or a pharmaceutically acceptable salt of any thereof.

4 . A compound selected from the group consisting of:

1*

2*

3*

4*

5*

6*

7*

8*

9*

10*

11*

12*

and

13*

wherein A − is a pharmaceutically acceptable counter ion,

or a pharmaceutically acceptable salt thereof.

5 . The compound of claim 4 , selected from the group consisting of:

or any other pharmaceutically acceptable salt thereof.

6 . The compound of claim 5 , selected from the group consisting of:

or any other pharmaceutically acceptable salt thereof.

7 . The compound of claim 4 , which is selected from the group consisting of:

wherein A − is a pharmaceutically acceptable counter ion,

or a pharmaceutically acceptable salt thereof.

8 . A composition comprising at least one compound of claim 1 , or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.

9 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a composition of claim 8 .

10 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a compound of claim 1 .

11 . A composition comprising at least one compound of claim 4 , or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.

12 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a composition of claim 11 .

13 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a compound of claim 4 .

14 . A composition comprising at least one compound of claim 2 , or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.

15 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a composition of claim 14 .

16 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a compound of claim 2 .

17 . A composition comprising at least one compound of claim 3 , or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.

18 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a composition of claim 17 .

19 . A method of treating hypercholesterolemia, comprising administering to a patient in need thereof a therapeutically effective amount of a compound of claim 3 .

Assignments (3)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 22, 2022
From: JOSIEN, HUBERT; TUCKER, THOMAS JOSEPH; WALJI, ABBAS M.; WOOD, HAROLD B.
To: MERCK SHARP & DOHME CORP.
Reel/Frame 061179/0361 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 22, 2022
From: LIU, JIAN
To: MERCK SHARP & DOHME CORP.
Reel/Frame 061180/0421 →
MERGER Recorded Sep 22, 2022
From: MERCK SHARP & DOHME CORP.
To: MERCK SHARP & DOHME LLC
Reel/Frame 061183/0596 →
Continuity (2)
Provisional Application 62951802 · Dec 20, 2019
Related Publication 20230144324A1 · May 11, 2023
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Arias et al., “Recombinant expression, antimicrobial activity and mechanism of action of tritrpticin analogs containing fluoro-tryptophan residues”, [cited by applicant]
Benjannet et al., “NARC-1/PSCK9 and Its Natural Mutants”, [cited by applicant]
Benjannet et al., “Loss- and Gain-of-function PCSK9 Variants”, [cited by applicant]
Cohen et al., “Sequence Variations in PSCK9, Low LDL, and Protection against Coronary Heart Disease”, [cited by applicant]
Dadu et al., “Lipid lowering with PCSK9 inhibitors”, [cited by applicant]
Dubuc et al., “Statins Upregulate PCSK9, the Gene Encoding the Proprotein Convertase Neural Apoptosis-Regulated Convertase-1 Implicated in Familial Hypercholesterolemia”, [cited by applicant]
Elbitar et al., “Proprotein convertase subtilisin/kexin 9 (PCSK9) inhibitors and the future of dyslipidemia therapy: an updated patent review (2011-2015)”, [cited by applicant]
Graham et al., “Antisense inhibition of proprotein convertase subtilisin/kexin type 9 reduces serum LDL in hyperlipidemic mice”, [cited by applicant]
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Josephson et al., “mRNA display: from basic principles to macrocycle drug discovery”, [cited by applicant]
Lalanne et al., “Wild-type PCSK9 inhibits LDL clearance but does not affect apoB-containing lipprotein production in mouse and cultured cells”, [cited by applicant]
Law et al., “Quantifying effect of statins on low density lipoprotein cholesterol, ischaemic heart disease, and stroke: systematic review and meta-analysis”, [cited by applicant]
Leren, “Mutations in the PSCK9 gene in Norwegian subjects with autosomal dominant hypercholesterolemia”, [cited by applicant]
Maxwell et al., “Novel putative SREBP and LXR target genes identified by microarray analysis in liver of cholesterol-fed mice”, [cited by applicant]
Maxwell et al., “Adenoviral-mediated expression of Pcsk9 in mice results in a low-density lipoprotein receptor knockout phenotype”, [cited by applicant]
Naureckiene et al., “Functional characterization of Narc 1, a novel proteinase related to proteinase K”, [cited by applicant]
Ougurram et al., “Apolioprotein B100 Metabolism in Autosomal-Dominant Hypercholesterolemia Related to Mutations in PSCK9”, [cited by applicant]
Park et al., “Post-transcriptional Regulation of Low Density Lipoprotein Receptor Protein by Proprotein Convertase Subtilisin/Kexin Type 9a in Mouse Liver”, [cited by applicant]
Rashid et al., “Decreased plasma cholesterol and hypersensitivity to stains in mice lacking Pcsk9”, [cited by applicant]
Seidah et al., “The secretory proprotein convertase neural apoptosis-regulated convertase 1 (NARC-1): Liver regeneration and neuronal differentiation”, [cited by applicant]
Seidah et al., “The biology and therapeutic targeting of the proprotein convertases”, [cited by applicant]
Timms et al., “A mutation in PSCK9 causing autosomal-dominant hypercholesterolemia in a Utah pedigree”, [cited by applicant]
Zhang et al., “Discovery of a cryptic peptide-binding site on PSCK9 and design of antagonists”, [cited by applicant]