IP Library › Granted Patent US 12,733,646
Granted Patent B2
US 12,733,646 · App. 18/556,542 · Granted Sep 15, 2026

Endophyte compositions and methods for improved plant health

Inventors: David A. Hubert (Durham, NC); Brandon M. Satinsky (Brookline, MA); Shib Basu (Apex, NC)
Assignee: Indigo Ag, LLC
A01N63/22A01N25/08A01N25/24A01N63/27A01N63/38A01P3/00C12R2001/07C12R2001/38C12R2001/885
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Quick Facts
Patent No.
US 12,733,646
App. No.
18/556,542
Granted
Sep 15, 2026
Kind
B2
Abstract

This invention relates to compositions and methods for improving plant health, wherein a plant is heterologously disposed to one or more endophytes, or derived from a plant element heterologously disposed to one or more endophytes.

Claims (20)

1 . A synthetic composition, comprising one or more endophytes heterologously disposed to a treatment formulation, wherein the one or more endophytes comprise at least one polynucleotide sequence that is at least 97% identical to SEQ ID NOs. 64, 66, 68, 69, 71, 73, 81, or 86, and the one or more endophytes comprise one or more open reading frames encoding proteins whose amino acid sequences are at least 97% identical to one or more of SEQ ID NOs. 98, 102, 103, 105, 110, 113, 118, 120, and 124.

2 . The synthetic composition of claim 1 , wherein the synthetic composition additionally comprises one or more plant elements.

3 . The synthetic composition of claim 2 , wherein the one or more plant elements are seeds.

4 . The synthetic composition of claim 2 , wherein the one or more plant elements are soybean, cotton, or wheat.

5 . The synthetic composition of claim 2 , wherein the synthetic composition comprises a least 1E+02 colony forming unit (CFU) endophytes per plant element.

6 . The synthetic composition of claim 2 , wherein the one or more endophytes are capable of improving one or more traits of agronomic importance in a plant relative to a reference plant, wherein the one or more traits of agronomic importance comprise one or more of biotic stress tolerance, shoot fresh weight, root weight, shoot weight, yield, early emergence, full emergence, and/or plant height.

7 . The synthetic composition of claim 6 , wherein the biotic stress is a growth environment comprising one or more species of Pythium, Rhizoctonia , and/or Fusarium.

8 . The synthetic composition of claim 1 , wherein the one or more endophytes comprises at least one polynucleotide region having at least 97% sequence identity to SEQ ID NO. 8, and at least one polynucleotide region having at least 97% sequence identity to SEQ ID NO. 64, and at least one polynucleotide region having at least 97% sequence identity to one or more polynucleotide sequences selected from the group consisting of SEQ ID NOs. 66, 68, 73, and 86.

9 . The synthetic composition of claim 1 , wherein the one or more endophytes are of the genus Trichoderma.

10 . The synthetic composition of claim 1 , wherein the treatment formulation comprises a solid carrier and adherent.

11 . The synthetic composition of claim 10 , wherein the solid carrier is talc and the adherent is mineral oil.

12 . A method of improving plant health, comprising applying a one or more heterologously disposed endophytes to one or more plant elements, wherein the one or more endophytes comprise at least one polynucleotide sequence that is at least 97% identical to SEQ ID NOs. 64, 66, 68, 69, 71, 73, 81, or 86, and the one or more endophytes comprise one or more open reading frames encoding proteins whose amino acid sequences are at least 97% identical to one or more of SEQ ID NOs. 98, 102, 103, 105, 110, 113, 118, 120, and 124.

13 . The method of claim 12 , wherein the one or more plant elements are soybean or wheat.

14 . The method of claim 12 , wherein the one or more heterologously disposed endophytes are present in an average abundance of a least 1E+02 CFU endophytes per plant element.

15 . The method of claim 12 , wherein the one or more endophytes are capable of improving one or more traits of agronomic importance in a plant relative to a reference plant, wherein the one or more traits of agronomic importance comprise one or more of biotic stress tolerance, shoot fresh weight, root weight, shoot weight, yield, early emergence, full emergence, and/or plant height.

16 . The method of claim 15 , wherein the biotic stress is a growth environment comprising one or more of species of Pythium, Rhizoctonia , and/or Fusarium.

17 . The method of claim 12 , wherein the one or more endophytes comprises at least one polynucleotide region having at least 97% sequence identity to SEQ ID NO. 81, and at least one polynucleotide region having at least 97% sequence identity to SEQ ID NO. 64, and at least one polynucleotide region having at least 97% sequence identity to one or more polynucleotide sequences selected from the group consisting of SEQ ID NOs. 66, 68, 73, and 86.

18 . The method of claim 12 , wherein the one or more endophytes are applied in a treatment formulation comprising a solid carrier and an adherent.

19 . The method of claim 18 , wherein the solid carrier is talc and the adherent is mineral oil.

20 . A synthetic composition, comprising one or more endophytes heterologously disposed to a treatment formulation, wherein the one or more endophytes comprise at least one polynucleotide sequence that is at least 99% identical to SEQ ID NOs. 59, 60, 64, 66, 67, 68, 69, 71, 73, 74, 76, 78-81, 83-85, 86, 89, or 90.

Assignments (2)
CHANGE OF NAME Recorded Jul 8, 2026
From: INDIGO AG, INC.
To: INDIGO AG, LLC
Reel/Frame 075928/0231 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 20, 2023
From: HUBERT, DAVID A.; SATINSKY, BRANDON M.; BASU, SHIB
To: INDIGO AG, INC.
Reel/Frame 065297/0244 →
Continuity (2)
Provisional Application 63201305 · Apr 22, 2021
Related Publication 20240180164A1 · Jun 6, 2024
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